BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149050.11 - phase: 0
(163 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RN12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain interacti... 62 7e-10
RN13_HUMAN (O43567) RING finger protein 13 61 1e-09
RN13_CHICK (Q90972) RING finger protein 13 (C-RZF) 61 1e-09
RNF6_HUMAN (Q9Y252) RING finger protein 6 (RING-H2 protein) 60 2e-09
RN13_MOUSE (O54965) RING finger protein 13 60 2e-09
RN12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain interacti... 60 2e-09
RH3A_ARATH (O22755) RING-H2 zinc finger protein RHA3a 58 8e-09
RH4A_ARATH (Q84TF5) RING-H2 zinc finger protein RHA4a 53 3e-07
RH3B_ARATH (Q9ZT49) RING-H2 zinc finger protein RHA3b 52 6e-07
GOLI_DROME (Q06003) Goliath protein (Protein g1) 52 6e-07
PJA1_MOUSE (O55176) Ubiquitin protein ligase Praja1 (EC 6.3.2.-) 51 1e-06
PJA1_HUMAN (Q8NG27) Ubiquitin protein ligase Praja1 (EC 6.3.2.-) 51 1e-06
RN24_HUMAN (Q9Y225) RING finger protein 24 49 4e-06
RN11_MOUSE (Q9QYK7) RING finger protein 11 (Sid 1669) (Nedd4 WW ... 49 4e-06
RN11_HUMAN (Q9Y3C5) RING finger protein 11 (Sid 1669) (CGI-123) 49 4e-06
ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P... 49 5e-06
ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P... 49 5e-06
DZP3_MOUSE (Q7TPV2) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-) ... 49 5e-06
Z364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Fragment) 49 7e-06
ICP0_PRVIF (P29129) Trans-acting transcriptional protein ICP0 (E... 48 1e-05
>RN12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain interacting
RING finger protein) (RING finger LIM domain-binding
protein) (R-LIM)
Length = 600
Score = 61.6 bits (148), Expect = 7e-10
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 54 RIREGASEDDIKSLPMYRFCQPNVMIMVDKNKTQLEARTGSHNRSHISELSLHPDDS--E 111
R R + D+ SLP + Q ++ + ++ Q T +++ S +D+
Sbjct: 489 RHRAPVTFDESGSLPFFSLAQ--FFLLNEDDEDQPRGLT-KEQIDNLAMRSFGENDALKT 545
Query: 112 CCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
C +C+ Y +G +L +LPC+H FH CI RWL +TCP+C+
Sbjct: 546 CSVCITEYTEGDKLRKLPCSHEFHVHCIDRWLSENSTCPICR 587
>RN13_HUMAN (O43567) RING finger protein 13
Length = 381
Score = 60.8 bits (146), Expect = 1e-09
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 90 ARTGSHNRSHISELSLHP-----DDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWL- 143
AR + + +L +H + C ICL Y DG +L LPC+H +HC+C+ WL
Sbjct: 213 ARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLT 272
Query: 144 RTKATCPLCK 153
+TK TCP+CK
Sbjct: 273 KTKKTCPVCK 282
>RN13_CHICK (Q90972) RING finger protein 13 (C-RZF)
Length = 381
Score = 60.8 bits (146), Expect = 1e-09
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 90 ARTGSHNRSHISELSLHP-----DDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWL- 143
AR + + +L +H + C ICL Y DG +L LPC+H +HC+C+ WL
Sbjct: 213 ARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLT 272
Query: 144 RTKATCPLCK 153
+TK TCP+CK
Sbjct: 273 KTKKTCPVCK 282
>RNF6_HUMAN (Q9Y252) RING finger protein 6 (RING-H2 protein)
Length = 685
Score = 60.1 bits (144), Expect = 2e-09
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 112 CCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
C +C+ YV G +L +LPC H FH CI RWL TCP+C+
Sbjct: 632 CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICR 673
>RN13_MOUSE (O54965) RING finger protein 13
Length = 381
Score = 60.1 bits (144), Expect = 2e-09
Identities = 24/43 (55%), Positives = 31/43 (71%), Gaps = 1/43 (2%)
Query: 112 CCICLCPYVDGTELYRLPCTHHFHCECIGRWL-RTKATCPLCK 153
C ICL Y DG +L LPC+H +HC+C+ WL +TK TCP+CK
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>RN12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain interacting
RING finger protein) (RING finger LIM domain-binding
protein) (R-LIM) (NY-REN-43 antigen)
Length = 624
Score = 60.1 bits (144), Expect = 2e-09
Identities = 19/42 (45%), Positives = 29/42 (68%)
Query: 112 CCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
C +C+ Y +G +L +LPC+H +H CI RWL +TCP+C+
Sbjct: 570 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 611
>RH3A_ARATH (O22755) RING-H2 zinc finger protein RHA3a
Length = 185
Score = 58.2 bits (139), Expect = 8e-09
Identities = 23/47 (48%), Positives = 32/47 (67%), Gaps = 1/47 (2%)
Query: 108 DDSECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKATCPLCK 153
D +EC ICL + DG E+ LP C H FH ECI +WL ++++CP C+
Sbjct: 98 DSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCR 144
>RH4A_ARATH (Q84TF5) RING-H2 zinc finger protein RHA4a
Length = 174
Score = 52.8 bits (125), Expect = 3e-07
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 109 DSECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKATCPLCKFNIRI 158
DS CC+CL + EL +P C H FH +CI WL + TCPLC+ ++ I
Sbjct: 102 DSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSI 152
>RH3B_ARATH (Q9ZT49) RING-H2 zinc finger protein RHA3b
Length = 200
Score = 52.0 bits (123), Expect = 6e-07
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 110 SECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKATCPLCK 153
+EC IC+ + +G E+ LP C+H FH CI +WL ++++CP C+
Sbjct: 111 TECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCR 155
>GOLI_DROME (Q06003) Goliath protein (Protein g1)
Length = 286
Score = 52.0 bits (123), Expect = 6e-07
Identities = 22/49 (44%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
Query: 109 DSECC-ICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNI 156
DS+CC IC+ Y + LPC H FH CI WL TCP+CK ++
Sbjct: 124 DSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMCKLDV 172
>PJA1_MOUSE (O55176) Ubiquitin protein ligase Praja1 (EC 6.3.2.-)
Length = 605
Score = 51.2 bits (121), Expect = 1e-06
Identities = 19/42 (45%), Positives = 24/42 (56%)
Query: 112 CCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
C IC YV G LPC H+FH C+ WL+ TCP+C+
Sbjct: 531 CPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCR 572
>PJA1_HUMAN (Q8NG27) Ubiquitin protein ligase Praja1 (EC 6.3.2.-)
Length = 643
Score = 51.2 bits (121), Expect = 1e-06
Identities = 19/42 (45%), Positives = 24/42 (56%)
Query: 112 CCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
C IC YV G LPC H+FH C+ WL+ TCP+C+
Sbjct: 595 CPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCR 636
>RN24_HUMAN (Q9Y225) RING finger protein 24
Length = 148
Score = 49.3 bits (116), Expect = 4e-06
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 97 RSHISELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNI 156
+ + EL+LH C +CL + EL PC H FH +C+ +WL + CPLC +
Sbjct: 66 KEKVKELNLH---ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 122
>RN11_MOUSE (Q9QYK7) RING finger protein 11 (Sid 1669) (Nedd4 WW
domain-binding protein 2)
Length = 154
Score = 49.3 bits (116), Expect = 4e-06
Identities = 19/42 (45%), Positives = 24/42 (56%)
Query: 111 ECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLC 152
EC IC+ +V G + LPC H +H +CI WL TCP C
Sbjct: 98 ECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSC 139
>RN11_HUMAN (Q9Y3C5) RING finger protein 11 (Sid 1669) (CGI-123)
Length = 154
Score = 49.3 bits (116), Expect = 4e-06
Identities = 19/42 (45%), Positives = 24/42 (56%)
Query: 111 ECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLC 152
EC IC+ +V G + LPC H +H +CI WL TCP C
Sbjct: 98 ECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSC 139
>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135
protein) (IER 2.9/ER2.6)
Length = 676
Score = 48.9 bits (115), Expect = 5e-06
Identities = 22/47 (46%), Positives = 24/47 (50%), Gaps = 2/47 (4%)
Query: 107 PDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
P+ CCICL LPC H F CI RWL + TCPLCK
Sbjct: 8 PELGSCCICLDAITGAARA--LPCLHAFCLACIRRWLEGRPTCPLCK 52
>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135
protein) (IER 2.9/ER2.6)
Length = 676
Score = 48.9 bits (115), Expect = 5e-06
Identities = 22/47 (46%), Positives = 24/47 (50%), Gaps = 2/47 (4%)
Query: 107 PDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
P+ CCICL LPC H F CI RWL + TCPLCK
Sbjct: 8 PELGSCCICLDAITGAARA--LPCLHAFCLACIRRWLEGRPTCPLCK 52
>DZP3_MOUSE (Q7TPV2) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-)
(DAZ-interacting protein 3 homolog)
Length = 1204
Score = 48.9 bits (115), Expect = 5e-06
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 45 LAYALTQPLRIREGASE-----DDIKSLPMYRFCQPNVMIMVDKNKTQLEARTGSHNRSH 99
+ Y ++Q + ++ SE D + P + QPN D Q GS
Sbjct: 1078 IVYKISQMIEPKKSESEEKSAQDGNNASPSHTASQPNAP--QDPKSAQ-----GSATWEG 1130
Query: 100 ISELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNI 156
++ ++ E C+ + L LPC H FH +CI WL + TCP C+ ++
Sbjct: 1131 DKDMDNEEEEEEPCVICHENLSPENLSVLPCAHKFHSQCIRPWLMQQGTCPTCRLHV 1187
>Z364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Fragment)
Length = 232
Score = 48.5 bits (114), Expect = 7e-06
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 111 ECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
EC +C Y E+ +LPC H FH CI WL TCP+C+
Sbjct: 155 ECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCR 197
>ICP0_PRVIF (P29129) Trans-acting transcriptional protein ICP0
(Early protein 0) (EP0)
Length = 410
Score = 47.8 bits (112), Expect = 1e-05
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 103 LSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIGDIM 162
LSL +C ICL V TE LPC H F +CI RW T CPLC N R+ I+
Sbjct: 37 LSLPLTVMDCPICLD--VAATEAQTLPCMHKFCLDCIQRWTLTSTACPLC--NARVTSIL 92
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.332 0.143 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,852,853
Number of Sequences: 164201
Number of extensions: 710334
Number of successful extensions: 2197
Number of sequences better than 10.0: 153
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 2093
Number of HSP's gapped (non-prelim): 160
length of query: 163
length of database: 59,974,054
effective HSP length: 102
effective length of query: 61
effective length of database: 43,225,552
effective search space: 2636758672
effective search space used: 2636758672
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 61 (28.1 bits)
Medicago: description of AC149050.11