BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148996.16 - phase: 0 /pseudo
(332 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
COPP_YEAST (P41811) Coatomer beta' subunit (Beta'-coat protein) ... 48 4e-05
TAF5_DROME (P49846) Transcription initiation factor TFIID subuni... 43 0.001
AIP1_YEAST (P46680) Actin interacting protein 1 43 0.001
YY46_ANASP (Q8YRI1) Hypothetical WD-repeat protein alr3466 43 0.001
GBB_CRYPA (O14435) Guanine nucleotide-binding protein beta subunit 42 0.003
CST1_HUMAN (Q05048) Cleavage stimulation factor, 50 kDa subunit ... 41 0.004
TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subuni... 40 0.006
WDR5_MOUSE (P61965) WD-repeat protein 5 (WD-repeat protein BIG-3) 39 0.014
WDR5_HUMAN (P61964) WD-repeat protein 5 39 0.014
TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subuni... 39 0.014
PKWA_THECU (P49695) Probable serine/threonine-protein kinase pkw... 39 0.014
COPP_CAEEL (Q20168) Probable coatomer beta' subunit (Beta'-coat ... 39 0.014
TA5L_HUMAN (O75529) TAF5-like RNA polymerase II p300/CBP-associa... 39 0.018
SE10_CAEEL (Q93794) F-box/WD-repeat protein sel-10 (Suppressor/e... 38 0.031
COPP_DROME (O62621) Coatomer beta' subunit (Beta'-coat protein) ... 38 0.031
WDR1_MOUSE (O88342) WD-repeat protein 1 (Actin interacting prote... 38 0.040
TAF5_YEAST (P38129) Transcription initiation factor TFIID subuni... 38 0.040
TA5L_MOUSE (Q91WQ5) TAF5-like RNA polymerase II p300/CBP-associa... 38 0.040
COPP_SCHPO (O42937) Probable coatomer beta' subunit (Beta'-coat ... 38 0.040
Y893_HUMAN (O94967) Hypothetical protein KIAA0893 37 0.053
>COPP_YEAST (P41811) Coatomer beta' subunit (Beta'-coat protein)
(Beta'-COP)
Length = 889
Score = 47.8 bits (112), Expect = 4e-05
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
IDFHP+E V + L G + L+ Y + V V + RA +FI ++
Sbjct: 19 IDFHPTEPWVLTTLYSGRVELWNYETQ------VEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDDGCIK 121
GS DF I + TG + + + + ++ T+ V SG DD +K
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
>TAF5_DROME (P49846) Transcription initiation factor TFIID subunit 5
(Transcription initiation factor TFIID 85 kDa subunit)
(p85) (TAFII-80)
Length = 704
Score = 43.1 bits (100), Expect = 0.001
Identities = 33/108 (30%), Positives = 52/108 (47%), Gaps = 9/108 (8%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
+ FHP+ N VA+G D + L+ DN VR++ H S + F GR + +
Sbjct: 540 VQFHPNSNYVATGSSDRTVRLW----DNMTGQSVRLMT--GHKGSVSSLAFSACGRYLAS 593
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTV--ASGDDD 117
GS D +I+ D+ GS + L H + V + + TV A+G D+
Sbjct: 594 GSVDHNIIIWDLSNGSLVTTL-LRHTSTVTTITFSRDGTVLAAAGLDN 640
>AIP1_YEAST (P46680) Actin interacting protein 1
Length = 615
Score = 43.1 bits (100), Expect = 0.001
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 15/120 (12%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRA--- 68
I PSE +A+G + G + LY + S V+ HT A + +
Sbjct: 494 ISISPSETYIAAGDVMGKILLY-----DLQSREVKTSRWAFHTSKINAISWKPAEKGANE 548
Query: 69 -------VLTGSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDDGCIK 121
V TGS D +I V+ I + NAH+ VN L+ T ST+ S D CIK
Sbjct: 549 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIK 608
>YY46_ANASP (Q8YRI1) Hypothetical WD-repeat protein alr3466
Length = 1526
Score = 42.7 bits (99), Expect = 0.001
Identities = 60/293 (20%), Positives = 109/293 (36%), Gaps = 35/293 (11%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
+ F P L A+G G + + ++ +L H + F G+ + +
Sbjct: 870 VAFSPDGKLFATGDSGGIVRFWEAATGK------ELLTCKGHNSWVNSVGFSQDGKMLAS 923
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTV-ASGDDDGCIKTLLLHLTQ* 130
GS D ++ D+ +G + H + V ++ S + ASG D ++ + +
Sbjct: 924 GSDDQTVRLWDISSGQCLKTF-KGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGEC 982
Query: 131 KYWPQVETGLFLFAIFDEIKSKPNLNFLKMSCCLWF**RMAGKLFADHKLESCYCIHGDA 190
Y Q TG F+ S + LW + S C +
Sbjct: 983 LYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLW-------------DISSSQCFYIFQ 1029
Query: 191 SRIAVIDSLILLQTLLIPC*RIITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSH 250
+ + S++ + + +GS++ + L I + + H+ V + FS
Sbjct: 1030 GHTSCVRSVVFSSDGAM----LASGSDDQTVRLWDISSGNCLYTLQGHTSC-VRSVVFSP 1084
Query: 251 DRKFLGSIGHDQMLKLWDLDN-----ILQGSRSTQR----NETGVVANDGDSD 294
D L S G DQ+++LWD+ + LQG S R + GV +G SD
Sbjct: 1085 DGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSD 1137
Score = 40.4 bits (93), Expect = 0.006
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
I F P L+ASG D + L+ SS + +H H S R+ F + G + +
Sbjct: 1416 IVFSPDGTLLASGSDDQTVRLWNISSGEC------LYTLHGHINSVRSVAFSSDGLILAS 1469
Query: 72 GSPDFSILATDVETGSTIARL 92
GS D +I DV+TG I L
Sbjct: 1470 GSDDETIKLWDVKTGECIKTL 1490
Score = 38.9 bits (89), Expect = 0.018
Identities = 53/259 (20%), Positives = 100/259 (38%), Gaps = 26/259 (10%)
Query: 14 FHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLTGS 73
F P+ +A+G D + L+ SS + + HT A F G + +GS
Sbjct: 1124 FSPNGVTLANGSSDQIVRLWDISSKKC------LYTLQGHTNWVNAVAFSPDGATLASGS 1177
Query: 74 PDFSILATDVETGSTIARLDNAHEAAVNRLI-NLTESTVASGDDDGCIKTLLLHLTQ*KY 132
D ++ D+ + + L H + VN ++ N ST+ASG D ++ ++ ++
Sbjct: 1178 GDQTVRLWDISSSKCLYILQG-HTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLC 1236
Query: 133 WPQVETGLFLFAIFDEIKSKPNLNFLKMSCCLWF**RMAGKLFADHKLESCYCIHGDASR 192
Q T +F+ S + LW + S C+H
Sbjct: 1237 TFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLW-------------DISSSKCLHTFQGH 1283
Query: 193 IAVIDSLILLQTLLIPC*RIITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSHDR 252
++S+ + + +GS + + L I ++ + H+ + V + FS D
Sbjct: 1284 TNWVNSVAFNPDGSM----LASGSGDQTVRLWEISSSKCLHTFQGHTSW-VSSVTFSPDG 1338
Query: 253 KFLGSIGHDQMLKLWDLDN 271
L S DQ ++LW + +
Sbjct: 1339 TMLASGSDDQTVRLWSISS 1357
Score = 37.0 bits (84), Expect = 0.069
Identities = 62/291 (21%), Positives = 107/291 (36%), Gaps = 35/291 (12%)
Query: 14 FHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLTGS 73
F P+ ++ASG D + L+ SS + HT + F G + TGS
Sbjct: 956 FSPNSLMLASGSSDQTVRLWDISSGEC------LYIFQGHTGWVYSVAFNLDGSMLATGS 1009
Query: 74 PDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTV-ASGDDDGCIKTLLLHLTQ*KY 132
D ++ D+ + S + H + V ++ ++ + ASG DD ++ + Y
Sbjct: 1010 GDQTVRLWDISS-SQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLY 1068
Query: 133 WPQVETGLFLFAIFDEIKSKPNLNFLKMSCCLWF**RMAGKLFADHKLESCYCIHGDASR 192
Q T +F + LW + S C++
Sbjct: 1069 TLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLW-------------DISSGNCLYTLQGY 1115
Query: 193 IAVIDSLILLQTLLIPC*RIITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSHDR 252
+ + L+ + + GS + ++ L I + + + H+ + V +AFS D
Sbjct: 1116 TSWVRFLVFSPNGVT----LANGSSDQIVRLWDISSKKCLYTLQGHTNW-VNAVAFSPDG 1170
Query: 253 KFLGSIGHDQMLKLWDLDN-----ILQGS----RSTQRNETGVVANDGDSD 294
L S DQ ++LWD+ + ILQG S N G G SD
Sbjct: 1171 ATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSD 1221
Score = 35.8 bits (81), Expect = 0.15
Identities = 50/263 (19%), Positives = 100/263 (38%), Gaps = 26/263 (9%)
Query: 10 FDIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAV 69
+ + F+ +++A+G D + L+ SS HT R+ F + G +
Sbjct: 994 YSVAFNLDGSMLATGSGDQTVRLWDISSSQC------FYIFQGHTSCVRSVVFSSDGAML 1047
Query: 70 LTGSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDDGCIKTLLLHLTQ 129
+GS D ++ D+ +G+ + L + + + + +ASG DD ++ +
Sbjct: 1048 ASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGN 1107
Query: 130 *KYWPQVETGLFLFAIFDEIKSKPNLNFLKMSCCLWF**RMAGKLFADHKLESC-YCIHG 188
Y Q T F +F LW D + C Y + G
Sbjct: 1108 CLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLW-----------DISSKKCLYTLQG 1156
Query: 189 DASRIAVIDSLILLQTLLIPC*RIITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAF 248
+ + + TL +GS + + L I ++ + + H+ + V + F
Sbjct: 1157 HTNWVNAVAFSPDGATL-------ASGSGDQTVRLWDISSSKCLYILQGHTSW-VNSVVF 1208
Query: 249 SHDRKFLGSIGHDQMLKLWDLDN 271
+ D L S DQ ++LW++++
Sbjct: 1209 NPDGSTLASGSSDQTVRLWEINS 1231
Score = 30.0 bits (66), Expect = 8.4
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
+ F P ++ASG D + L+ SS + HT + F G + +
Sbjct: 1332 VTFSPDGTMLASGSDDQTVRLWSISSGEC------LYTFLGHTNWVGSVIFSPDGAILAS 1385
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTV-ASGDDDGCIK 121
GS D ++ + +G + L H V ++ + T+ ASG DD ++
Sbjct: 1386 GSGDQTVRLWSISSGKCLYTLQG-HNNWVGSIVFSPDGTLLASGSDDQTVR 1435
>GBB_CRYPA (O14435) Guanine nucleotide-binding protein beta subunit
Length = 359
Score = 41.6 bits (96), Expect = 0.003
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 14 FHPSENLVASGLIDGDLHLYRYSSDNTNSD-PVRVL-EVHAHTESCRAARFINGGRAVLT 71
+ PS N VA G +D +Y N N D P RV E+ H RFIN R++LT
Sbjct: 121 YAPSGNYVACGGLDNICSIYNL---NQNRDGPTRVARELSGHAGYLSCCRFIND-RSILT 176
Query: 72 GSPDFSILATDVETGS-TIARLDNAHEAAVNRLINLTESTVASGDDDGCIK 121
S D + + D+ETG+ I D+ + L ++T SG D K
Sbjct: 177 SSGDMTCMKWDIETGTKQIEFADHLGDVMSISLNPTNQNTFISGACDAFAK 227
>CST1_HUMAN (Q05048) Cleavage stimulation factor, 50 kDa subunit
(CSTF 50 kDa subunit) (CF-1 50 kDa subunit)
Length = 431
Score = 41.2 bits (95), Expect = 0.004
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 14 FHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLTGS 73
FHP+E ++ASG D L L+ YS + R + E R+ F G +L G+
Sbjct: 181 FHPTEQILASGSRDYTLKLFDYSKPSAK----RAFKYIQEAEMLRSISFHPSGDFILVGT 236
Query: 74 PDFSILATDVETGSTIARL---DNAHEAAVNRLINLTESTVASGDDDGCIK 121
++ D+ T D +A + N + + +G DGCIK
Sbjct: 237 QHPTLRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYVTGSKDGCIK 287
Score = 34.3 bits (77), Expect = 0.45
Identities = 20/58 (34%), Positives = 31/58 (52%), Gaps = 1/58 (1%)
Query: 213 ITGSENGMINLVGILPNRIIEPIAE-HSEYPVERLAFSHDRKFLGSIGHDQMLKLWDL 269
+TGS++G I L + NR I + H V FS + K++ S G D + KLW++
Sbjct: 278 VTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEI 335
Score = 31.6 bits (70), Expect = 2.9
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
I FHPS + + G L LY NT V HT++ + + + +T
Sbjct: 223 ISFHPSGDFILVGTQHPTLRLYDI---NTFQCFVSCNPQDQHTDAICSVNYNSSANMYVT 279
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAA 99
GS D I D + I + AH+ A
Sbjct: 280 GSKDGCIKLWDGVSNRCITTFEKAHDGA 307
>TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subunit 5
(Transcription initiation factor TFIID 100 kDa subunit)
(TAF(II)100) (TAFII-100) (TAFII100)
Length = 800
Score = 40.4 bits (93), Expect = 0.006
Identities = 28/108 (25%), Positives = 46/108 (41%), Gaps = 6/108 (5%)
Query: 14 FHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLTGS 73
FHP+ N VA+G D + L+ D N + VR+ H + F GR + TG+
Sbjct: 635 FHPNSNYVATGSADRTVRLW----DVLNGNCVRIFT--GHKGPIHSLTFSPNGRFLATGA 688
Query: 74 PDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDDGCIK 121
D +L D+ G + L + + + +ASG D ++
Sbjct: 689 TDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVR 736
>WDR5_MOUSE (P61965) WD-repeat protein 5 (WD-repeat protein BIG-3)
Length = 334
Score = 39.3 bits (90), Expect = 0.014
Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARF-INGGRAVL 70
+ F P+ + + +D L L+ YS ++ H + + C A F + GG+ ++
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 71 TGSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASG--DDDGCIK 121
+GS D + +++T + +L + ++ + TE+ +AS ++D IK
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328
Score = 36.2 bits (82), Expect = 0.12
Identities = 61/281 (21%), Positives = 110/281 (38%), Gaps = 60/281 (21%)
Query: 11 DIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVL 70
D+ + NL+ S D L ++ SS ++ L+ H++ C F ++
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFC--CNFNPQSNLIV 145
Query: 71 TGSPDFSILATDVETGSTIARLDNAHEAAVNRL-INLTESTVASGDDDGCIKTLLLHLTQ 129
+GS D S+ DV+TG + L AH V+ + N S + S DG
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLC--------- 195
Query: 130 *KYWPQVETGLFLFAIFDE-------IKSKPNLNF-----LKMSCCLW-F**RMAGKLFA 176
+ W +G L + D+ +K PN + L + LW + K +
Sbjct: 196 -RIW-DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 177 DHKLESCYCIHGDASRIAVIDSLILLQTLLIPC*RIITGSENGMINLVGILPNRIIEPIA 236
HK E YCI + S + I++GSE+ ++ + + I++ +
Sbjct: 254 GHKNEK-YCIFANFS--------------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Query: 237 EHSE-------YPVERLAFSHDRKFLGSIGHDQMLKLWDLD 270
H++ +P E + S ++ +D+ +KLW D
Sbjct: 299 GHTDVVISTACHPTENIIAS------AALENDKTIKLWKSD 333
>WDR5_HUMAN (P61964) WD-repeat protein 5
Length = 334
Score = 39.3 bits (90), Expect = 0.014
Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARF-INGGRAVL 70
+ F P+ + + +D L L+ YS ++ H + + C A F + GG+ ++
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 71 TGSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASG--DDDGCIK 121
+GS D + +++T + +L + ++ + TE+ +AS ++D IK
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328
Score = 36.2 bits (82), Expect = 0.12
Identities = 61/281 (21%), Positives = 110/281 (38%), Gaps = 60/281 (21%)
Query: 11 DIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVL 70
D+ + NL+ S D L ++ SS ++ L+ H++ C F ++
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFC--CNFNPQSNLIV 145
Query: 71 TGSPDFSILATDVETGSTIARLDNAHEAAVNRL-INLTESTVASGDDDGCIKTLLLHLTQ 129
+GS D S+ DV+TG + L AH V+ + N S + S DG
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLC--------- 195
Query: 130 *KYWPQVETGLFLFAIFDE-------IKSKPNLNF-----LKMSCCLW-F**RMAGKLFA 176
+ W +G L + D+ +K PN + L + LW + K +
Sbjct: 196 -RIW-DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 177 DHKLESCYCIHGDASRIAVIDSLILLQTLLIPC*RIITGSENGMINLVGILPNRIIEPIA 236
HK E YCI + S + I++GSE+ ++ + + I++ +
Sbjct: 254 GHKNEK-YCIFANFS--------------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Query: 237 EHSE-------YPVERLAFSHDRKFLGSIGHDQMLKLWDLD 270
H++ +P E + S ++ +D+ +KLW D
Sbjct: 299 GHTDVVISTACHPTENIIAS------AALENDKTIKLWKSD 333
>TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subunit 5
(Transcription initiation factor TFIID 100 kDa subunit)
(TAF(II)100) (TAFII-100) (TAFII100)
Length = 801
Score = 39.3 bits (90), Expect = 0.014
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 14 FHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLTGS 73
+HP+ N VA+G D + L+ D N + VR+ H + F GR + TG+
Sbjct: 636 YHPNSNYVATGSADRTVRLW----DVLNGNCVRIFT--GHKGPIHSLTFSPNGRFLATGA 689
Query: 74 PDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDDGCIK 121
D +L D+ G + L + + + +ASG D ++
Sbjct: 690 TDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVR 737
>PKWA_THECU (P49695) Probable serine/threonine-protein kinase pkwA
(EC 2.7.1.37)
Length = 742
Score = 39.3 bits (90), Expect = 0.014
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 11 DIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVL 70
DI F P ++VASG DG L+ ++ ++ + HT+ A F G V
Sbjct: 548 DIAFSPDGSMVASGSRDGTARLWNVATGTEHA------VLKGHTDYVYAVAFSPDGSMVA 601
Query: 71 TGSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDD 116
+GS D +I DV TG L E V+ + S + G D
Sbjct: 602 SGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGSD 647
Score = 38.9 bits (89), Expect = 0.018
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 9 AFDIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRA 68
A + F P +L+A G D +H++ D + D + LE HT+ RA F G
Sbjct: 462 AVAVAFSPGGSLLAGGSGDKLIHVW----DVASGDELHTLE--GHTDWVRAVAFSPDGAL 515
Query: 69 VLTGSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDDG 118
+ +GS D ++ DV A + ++ + S VASG DG
Sbjct: 516 LASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGSMVASGSRDG 565
Score = 33.9 bits (76), Expect = 0.58
Identities = 28/108 (25%), Positives = 47/108 (42%), Gaps = 7/108 (6%)
Query: 14 FHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLTGS 73
F P +++ G D +HL+ D + + + E HT+ RA F G + +GS
Sbjct: 635 FSPDGSMLVHGS-DSTVHLW----DVASGEALHTFE--GHTDWVRAVAFSPDGALLASGS 687
Query: 74 PDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDDGCIK 121
D +I DV L+ E + + +T+AS +DG I+
Sbjct: 688 DDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPEGTTLASASEDGTIR 735
>COPP_CAEEL (Q20168) Probable coatomer beta' subunit (Beta'-coat
protein) (Beta'-COP)
Length = 1000
Score = 39.3 bits (90), Expect = 0.014
Identities = 28/110 (25%), Positives = 51/110 (45%), Gaps = 6/110 (5%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
+D HP E + + L +G++H++ Y + V+ EV RAA+F+ V+T
Sbjct: 21 VDLHPVETWLLAALYNGNVHIWNYETQTL----VKSFEV--CDVPVRAAKFVPRKSWVVT 74
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDDGCIK 121
GS D I + T + + + + + +++ T V S DD +K
Sbjct: 75 GSDDMHIRVFNYNTLERVHQFEAHSDYLRSLVVHPTLPYVISSSDDMLVK 124
>TA5L_HUMAN (O75529) TAF5-like RNA polymerase II p300/CBP-associated
factor-associated factor 65 kDa subunit 5L (PCAF
associated factor 65 beta) (PAF65-beta)
Length = 589
Score = 38.9 bits (89), Expect = 0.018
Identities = 23/58 (39%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Query: 212 IITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSHDRKFLGSIGHDQMLKLWDL 269
+ TGS + + L + H PV LAFS + K+L S G DQ LKLWDL
Sbjct: 441 LATGSTDKTVRLWSAQQGNSVRLFTGHRG-PVLSLAFSPNGKYLASAGEDQRLKLWDL 497
>SE10_CAEEL (Q93794) F-box/WD-repeat protein sel-10
(Suppressor/enhancer of lin-12) (Sel-10 protein)
Length = 587
Score = 38.1 bits (87), Expect = 0.031
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 45 VRVLEVHAHTESCRAARFINGGRAVLTGSPDFSILATDVETGSTIARLDNAHEAAVNRLI 104
+ L+ H T C A G ++TGS D ++ DVE+G +A L + H AAV R +
Sbjct: 331 LHTLQGHTSTVRCMAM----AGSILVTGSRDTTLRVWDVESGRHLATL-HGHHAAV-RCV 384
Query: 105 NLTESTVASGDDDGCIKTLLLH 126
+TV SG D +K H
Sbjct: 385 QFDGTTVVSGGYDFTVKIWNAH 406
Score = 32.0 bits (71), Expect = 2.2
Identities = 20/72 (27%), Positives = 31/72 (42%), Gaps = 2/72 (2%)
Query: 50 VHAHTESCRAARFINGGRAVLTGSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTES 109
+H H + R +F G V++G DF++ + TG I L + + L S
Sbjct: 374 LHGHHAAVRCVQF--DGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESERS 431
Query: 110 TVASGDDDGCIK 121
V SG D I+
Sbjct: 432 IVCSGSLDTSIR 443
>COPP_DROME (O62621) Coatomer beta' subunit (Beta'-coat protein)
(Beta'-COP)
Length = 914
Score = 38.1 bits (87), Expect = 0.031
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
+D HP+E + L +G +H+ Y + D V +V R+ARF+ +LT
Sbjct: 21 VDLHPAEPWMLCALYNGHVHIMNYENQQMVKD-FEVCDV-----PVRSARFVARKNWILT 74
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDDGCIK 121
GS D I + T + + + ++ T+ V + DD IK
Sbjct: 75 GSDDMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIK 124
>WDR1_MOUSE (O88342) WD-repeat protein 1 (Actin interacting protein
1) (AIP1)
Length = 606
Score = 37.7 bits (86), Expect = 0.040
Identities = 25/84 (29%), Positives = 38/84 (44%), Gaps = 1/84 (1%)
Query: 35 YSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLTGSPDFSILATDVETGSTIARLDN 94
Y N S P+RV++ H+ + C G + +GS D I D ETG +
Sbjct: 303 YLDKNNPSKPLRVIKGHSKSIQCLTVHRNGGKSYIYSGSHDGHINYWDSETGENDSFSGK 362
Query: 95 AHEAAVNRL-INLTESTVASGDDD 117
H V+R+ +N +E V+ DD
Sbjct: 363 GHTNQVSRMTVNESEQLVSCSMDD 386
>TAF5_YEAST (P38129) Transcription initiation factor TFIID subunit 5
(TBP-associated factor 5) (TBP-associated factor 90 kDa)
(TAFII-90)
Length = 798
Score = 37.7 bits (86), Expect = 0.040
Identities = 23/83 (27%), Positives = 46/83 (54%), Gaps = 1/83 (1%)
Query: 188 GDASRIAVIDSLILLQTLLIPC*R-IITGSENGMINLVGILPNRIIEPIAEHSEYPVERL 246
GD+ R+ + + ++ + P R + TGSE+G+IN+ I + ++ + H + + L
Sbjct: 641 GDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSL 700
Query: 247 AFSHDRKFLGSIGHDQMLKLWDL 269
++S + L S G D +++WDL
Sbjct: 701 SYSKEGNVLISGGADHTVRVWDL 723
Score = 32.7 bits (73), Expect = 1.3
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 10 FDIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAV 69
+D+ F P + A+ D L+ S D+ P+R+ H + C F G V
Sbjct: 571 WDVSFSPLGHYFATASHDQTARLW--SCDHIY--PLRIFAGHLNDVDC--VSFHPNGCYV 624
Query: 70 LTGSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTEST-VASGDDDGCI 120
TGS D + DV TG ++ RL H A V + + +++G +DG I
Sbjct: 625 FTGSSDKTCRMWDVSTGDSV-RLFLGHTAPVISIAVCPDGRWLSTGSEDGII 675
Score = 30.4 bits (67), Expect = 6.4
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 212 IITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLDN 271
+++GSE+ + L + + + H+ +PV ++FS + + HDQ +LW D+
Sbjct: 540 LLSGSEDKTVRLWSMDTHTALVSYKGHN-HPVWDVSFSPLGHYFATASHDQTARLWSCDH 598
Query: 272 I 272
I
Sbjct: 599 I 599
Score = 30.0 bits (66), Expect = 8.4
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
+ FHP+ V +G D ++ D + D VR+ HT + GR + T
Sbjct: 615 VSFHPNGCYVFTGSSDKTCRMW----DVSTGDSVRLFL--GHTAPVISIAVCPDGRWLST 668
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTV-ASGDDDGCIK 121
GS D I D+ TG + ++ + A+ L E V SG D ++
Sbjct: 669 GSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGADHTVR 719
>TA5L_MOUSE (Q91WQ5) TAF5-like RNA polymerase II p300/CBP-associated
factor-associated factor 65 kDa subunit 5L (PCAF
associated factor 65 beta) (PAF65-beta)
Length = 589
Score = 37.7 bits (86), Expect = 0.040
Identities = 22/58 (37%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Query: 212 IITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSHDRKFLGSIGHDQMLKLWDL 269
+ TGS + + L + H PV L+FS + K+L S G DQ LKLWDL
Sbjct: 441 LATGSTDKTVRLWSAQQGNSVRLFTGHRG-PVLSLSFSPNGKYLASAGEDQRLKLWDL 497
Score = 30.0 bits (66), Expect = 8.4
Identities = 27/124 (21%), Positives = 51/124 (40%), Gaps = 10/124 (8%)
Query: 1 MEINLGKLAFDID---FHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESC 57
+ I G LA D+D FHP+ N +A+G D + L+ N+ VR+ H
Sbjct: 419 LRIYAGHLA-DVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNS----VRLFT--GHRGPV 471
Query: 58 RAARFINGGRAVLTGSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDD 117
+ F G+ + + D + D+ +G+ L ++ + + +AS D
Sbjct: 472 LSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMD 531
Query: 118 GCIK 121
++
Sbjct: 532 NSVR 535
>COPP_SCHPO (O42937) Probable coatomer beta' subunit (Beta'-coat
protein) (Beta'-COP)
Length = 796
Score = 37.7 bits (86), Expect = 0.040
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
+DFHP+E V + +G + ++ Y++ VR +++ RA FI +
Sbjct: 20 VDFHPTEPWVIASHYNGQVGIWNYNTQTL----VRSFDIN--DVPIRACAFIARKNWFVC 73
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAAVNRL-INLTESTVASGDDDGCIK 121
GS DF + + TG + + + AH + L ++ T+ + + DD IK
Sbjct: 74 GSDDFQVRVYNYNTGEKVTQFE-AHPDYIRALVVHPTQPFLLTSSDDMTIK 123
>Y893_HUMAN (O94967) Hypothetical protein KIAA0893
Length = 919
Score = 37.4 bits (85), Expect = 0.053
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 6 GKLAFDIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFING 65
G + PS L+A+G D LY V H H+ R+ RF G
Sbjct: 800 GSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRM------VQSYHPHSSDVRSVRFSPG 853
Query: 66 GRAVLTGSPDFSILATDVE 84
+LTGS D I TD++
Sbjct: 854 AHYLLTGSYDMKIKVTDLQ 872
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.326 0.141 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,191,728
Number of Sequences: 164201
Number of extensions: 1557113
Number of successful extensions: 5808
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 5411
Number of HSP's gapped (non-prelim): 457
length of query: 332
length of database: 59,974,054
effective HSP length: 111
effective length of query: 221
effective length of database: 41,747,743
effective search space: 9226251203
effective search space used: 9226251203
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (30.0 bits)
Medicago: description of AC148996.16