BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148996.1 - phase: 0
(141 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
H2B_EUPCR (O97484) Histone H2B 57 1e-08
H2B_GOSHI (O22582) Histone H2B 56 2e-08
H2B1_WHEAT (P27807) Histone H2B 56 3e-08
H2B_PATGR (P02284) Histone H2B, gonadal 55 4e-08
H2B_ARATH (P40283) Histone H2B 55 5e-08
H2B5_MAIZE (P54348) Histone H2B 55 5e-08
H2B_TETPY (Q7M400) Histone H2B 55 6e-08
H2B2_TETTH (P08994) Histone H2B.2 (H2B-2) 55 6e-08
H2B1_TETTH (P08993) Histone H2B.1 (H2B-1) 55 6e-08
H2B2_ASHGO (Q8J1F8) Histone 2B.2 54 1e-07
H2B1_ASHGO (Q74ZL5) Histone 2B.1 54 1e-07
H2B3_TIGCA (P35069) Histone H2B.3 54 1e-07
H2B2_LYTPI (P06146) Histone H2B.2, sperm 54 1e-07
H2B_SIPNU (P30757) Histone H2B 53 2e-07
H2B_CAPAN (O49118) Histone H2B (CaH2B) 53 2e-07
H2B4_MAIZE (P49120) Histone H2B.4 53 2e-07
H2B2_CANGA (Q6FM30) Histone H2B.2 53 2e-07
H2B1_TIGCA (P35068) Histone H2B.1/H2B.2 53 2e-07
H2B1_CANGA (Q6FWM8) Histone H2B.1 53 2e-07
H2B_NEUCR (P37210) Histone H2B 53 2e-07
>H2B_EUPCR (O97484) Histone H2B
Length = 113
Score = 57.4 bits (137), Expect = 1e-08
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 20 KRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLV 79
K+RT F +IYRV K+VHP+ ++ +S+ +MN +ND+ KI E +K V + L
Sbjct: 20 KKRTETFSVYIYRVLKQVHPETGVSKKSMSIMNSFINDIFEKIALEASKLVRYNKKHTLS 79
Query: 80 ERDLWVGVKELYPKYLARCA 99
R++ V+ L P LA+ A
Sbjct: 80 SREVQTAVRLLLPGELAKHA 99
>H2B_GOSHI (O22582) Histone H2B
Length = 147
Score = 56.2 bits (134), Expect = 2e-08
Identities = 34/103 (33%), Positives = 64/103 (62%), Gaps = 8/103 (7%)
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E G+++G K++ +VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 32 KAGKKLPKEGGAAAGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 91
Query: 58 MLHKIVEEVAKNVAALNQK-LLVERDLWVGVKELYPKYLARCA 99
+ K+ +E A +A N+K + R++ V+ + P LA+ A
Sbjct: 92 IFEKLAQE-ASRLARYNKKPTITSREIQTAVRLVLPGELAKHA 133
>H2B1_WHEAT (P27807) Histone H2B
Length = 152
Score = 55.8 bits (133), Expect = 3e-08
Identities = 31/97 (31%), Positives = 56/97 (56%), Gaps = 3/97 (3%)
Query: 6 GKNIILEVGSSSGTKR--RTVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKI 62
GK+ E G G K+ ++VE +K +I++V K+VHPD+ I+ +++ +MN +ND+ K+
Sbjct: 42 GKSAAKEGGDKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKL 101
Query: 63 VEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
E AK + + R++ V+ + P LA+ A
Sbjct: 102 AGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHA 138
>H2B_PATGR (P02284) Histone H2B, gonadal
Length = 121
Score = 55.5 bits (132), Expect = 4e-08
Identities = 28/98 (28%), Positives = 50/98 (50%)
Query: 2 ASKKGKNIILEVGSSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHK 61
A K GK G +RR + +IY+V K+VHPD ++ +++ +MN +ND+ +
Sbjct: 9 AKKAGKAKAARSGDKKRKRRRKESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFER 68
Query: 62 IVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
I E ++ + + R++ V+ L P LA+ A
Sbjct: 69 IAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHA 106
>H2B_ARATH (P40283) Histone H2B
Length = 150
Score = 55.1 bits (131), Expect = 5e-08
Identities = 30/101 (29%), Positives = 58/101 (56%), Gaps = 5/101 (4%)
Query: 4 KKGKNIILEVGSSSGTKRR----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDM 58
K GK + E G+ K++ +VE +K +I++V K+VHPD+ I+ +++ +MN +ND+
Sbjct: 36 KAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDI 95
Query: 59 LHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
K+ +E +K + + R++ V+ + P LA+ A
Sbjct: 96 FEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHA 136
>H2B5_MAIZE (P54348) Histone H2B
Length = 154
Score = 55.1 bits (131), Expect = 5e-08
Identities = 31/97 (31%), Positives = 56/97 (56%), Gaps = 3/97 (3%)
Query: 6 GKNIILEVGSSSGTKR--RTVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKI 62
GK+ E G G K+ ++VE +K +I++V K+VHPD+ I+ +++ +MN +ND+ K+
Sbjct: 44 GKSAGKEGGDKKGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKL 103
Query: 63 VEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
E AK + + R++ V+ + P LA+ A
Sbjct: 104 AAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHA 140
>H2B_TETPY (Q7M400) Histone H2B
Length = 120
Score = 54.7 bits (130), Expect = 6e-08
Identities = 29/80 (36%), Positives = 48/80 (59%)
Query: 20 KRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLV 79
K+R+ F +I++V K+VHPD+ I+ +++ +MN +ND +I E +K V ++ L
Sbjct: 25 KKRSETFAIYIFKVLKQVHPDVGISKKAMNIMNSFINDSFERIALESSKLVRFNKRRTLS 84
Query: 80 ERDLWVGVKELYPKYLARCA 99
R++ VK L P LAR A
Sbjct: 85 SREVQTAVKLLLPGELARHA 104
>H2B2_TETTH (P08994) Histone H2B.2 (H2B-2)
Length = 121
Score = 54.7 bits (130), Expect = 6e-08
Identities = 29/80 (36%), Positives = 48/80 (59%)
Query: 20 KRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLV 79
K+R+ F +I++V K+VHPD+ I+ +++ +MN +ND +I E +K V ++ L
Sbjct: 26 KKRSETFAIYIFKVLKQVHPDVGISKKAMNIMNSFINDSFERIALESSKLVRFNKRRTLS 85
Query: 80 ERDLWVGVKELYPKYLARCA 99
R++ VK L P LAR A
Sbjct: 86 SREVQTAVKLLLPGELARHA 105
>H2B1_TETTH (P08993) Histone H2B.1 (H2B-1)
Length = 121
Score = 54.7 bits (130), Expect = 6e-08
Identities = 29/80 (36%), Positives = 48/80 (59%)
Query: 20 KRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLV 79
K+R+ F +I++V K+VHPD+ I+ +++ +MN +ND +I E +K V ++ L
Sbjct: 26 KKRSETFAIYIFKVLKQVHPDVGISKKAMNIMNSFINDSFERIALESSKLVRFNKRRTLS 85
Query: 80 ERDLWVGVKELYPKYLARCA 99
R++ VK L P LAR A
Sbjct: 86 SREVQTAVKLLLPGELARHA 105
>H2B2_ASHGO (Q8J1F8) Histone 2B.2
Length = 127
Score = 53.9 bits (128), Expect = 1e-07
Identities = 29/86 (33%), Positives = 50/86 (57%), Gaps = 2/86 (2%)
Query: 15 SSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALN 74
S TK R + +IY+V K+ HPD I+ +S+ ++N +ND+ +I E +K +AA N
Sbjct: 26 SKKRTKTRKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASK-LAAYN 84
Query: 75 QKLLVE-RDLWVGVKELYPKYLARCA 99
+K + R++ V+ + P LA+ A
Sbjct: 85 KKSTISAREIQTAVRLILPGELAKHA 110
>H2B1_ASHGO (Q74ZL5) Histone 2B.1
Length = 132
Score = 53.9 bits (128), Expect = 1e-07
Identities = 29/86 (33%), Positives = 50/86 (57%), Gaps = 2/86 (2%)
Query: 15 SSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALN 74
S TK R + +IY+V K+ HPD I+ +S+ ++N +ND+ +I E +K +AA N
Sbjct: 31 SKKRTKTRKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASK-LAAYN 89
Query: 75 QKLLVE-RDLWVGVKELYPKYLARCA 99
+K + R++ V+ + P LA+ A
Sbjct: 90 KKSTISAREIQTAVRLILPGELAKHA 115
>H2B3_TIGCA (P35069) Histone H2B.3
Length = 122
Score = 53.5 bits (127), Expect = 1e-07
Identities = 29/98 (29%), Positives = 51/98 (51%), Gaps = 2/98 (2%)
Query: 2 ASKKGKNIILEVGSSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHK 61
A K KNI G ++R + +IY+V K+VHPD I+ +++ +MN +ND+ +
Sbjct: 12 AGKAQKNI--SKGDKKKNRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFER 69
Query: 62 IVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
I E ++ + + R++ V+ L P LA+ A
Sbjct: 70 IASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHA 107
>H2B2_LYTPI (P06146) Histone H2B.2, sperm
Length = 142
Score = 53.5 bits (127), Expect = 1e-07
Identities = 26/80 (32%), Positives = 45/80 (55%)
Query: 20 KRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLV 79
+RR + +IYRV K+VHPD I+ + +MN +ND+ +I E ++ A ++ +
Sbjct: 48 RRRRESYGSYIYRVLKQVHPDTGISSRGMSVMNSFVNDVFERIAGEASRLCQANRRRTIS 107
Query: 80 ERDLWVGVKELYPKYLARCA 99
R++ V+ L P LA+ A
Sbjct: 108 SREIQTAVRLLLPGELAKHA 127
>H2B_SIPNU (P30757) Histone H2B
Length = 122
Score = 53.1 bits (126), Expect = 2e-07
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 14 GSSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAAL 73
G KRR + +IY+V K+VHPD I+ +++ +MN +ND+ +I E ++
Sbjct: 22 GDKKRRKRRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYN 81
Query: 74 NQKLLVERDLWVGVKELYPKYLARCA 99
+ + R++ V+ L P LA+ A
Sbjct: 82 RRSTITSREIQTAVRLLLPGELAKHA 107
>H2B_CAPAN (O49118) Histone H2B (CaH2B)
Length = 145
Score = 53.1 bits (126), Expect = 2e-07
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 4 KKGKNIILEVGSSSGTKRRTVE----FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDML 59
K GK + + G K+R + +K +I++V K+VHPD+ I+ +S+ +MN +ND+
Sbjct: 32 KAGKKLPKDAGRPDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIF 91
Query: 60 HKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 92 EKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 131
>H2B4_MAIZE (P49120) Histone H2B.4
Length = 137
Score = 53.1 bits (126), Expect = 2e-07
Identities = 29/91 (31%), Positives = 53/91 (57%), Gaps = 3/91 (3%)
Query: 12 EVGSSSGTKR--RTVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAK 68
E G G K+ ++VE +K +I++V K+VHPD+ I+ +++ +MN +ND+ K+ E AK
Sbjct: 33 EGGEKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAK 92
Query: 69 NVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ + R++ V+ + P LA+ A
Sbjct: 93 LARYNKKPTITSREIQTSVRLVLPGELAKHA 123
>H2B2_CANGA (Q6FM30) Histone H2B.2
Length = 130
Score = 53.1 bits (126), Expect = 2e-07
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 19 TKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLL 78
TK R + +IY+V K+ HPD I+ +S+ ++N +ND+ +I E +K +AA N+K
Sbjct: 33 TKARKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASK-LAAYNKKST 91
Query: 79 VE-RDLWVGVKELYPKYLARCA 99
+ R++ V+ + P LA+ A
Sbjct: 92 ISAREIQTAVRLILPGELAKHA 113
>H2B1_TIGCA (P35068) Histone H2B.1/H2B.2
Length = 122
Score = 53.1 bits (126), Expect = 2e-07
Identities = 29/98 (29%), Positives = 51/98 (51%), Gaps = 2/98 (2%)
Query: 2 ASKKGKNIILEVGSSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHK 61
A K KNI G ++R + +IY+V K+VHPD I+ +++ +MN +ND+ +
Sbjct: 12 AGKAQKNITK--GDKKKNRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFER 69
Query: 62 IVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
I E ++ + + R++ V+ L P LA+ A
Sbjct: 70 IASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHA 107
>H2B1_CANGA (Q6FWM8) Histone H2B.1
Length = 128
Score = 53.1 bits (126), Expect = 2e-07
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 19 TKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLL 78
TK R + +IY+V K+ HPD I+ +S+ ++N +ND+ +I E +K +AA N+K
Sbjct: 31 TKARKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASK-LAAYNKKST 89
Query: 79 VE-RDLWVGVKELYPKYLARCA 99
+ R++ V+ + P LA+ A
Sbjct: 90 ISAREIQTAVRLILPGELAKHA 111
>H2B_NEUCR (P37210) Histone H2B
Length = 137
Score = 52.8 bits (125), Expect = 2e-07
Identities = 26/94 (27%), Positives = 47/94 (49%)
Query: 6 GKNIILEVGSSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEE 65
GK TK R + +IY+V K+VHPD I+ ++ ++N +ND+ ++ E
Sbjct: 28 GKKTAASGDKKKRTKARKETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATE 87
Query: 66 VAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+K A + + R++ V+ + P LA+ A
Sbjct: 88 ASKLAAYNKKSTISSREIQTSVRLILPGELAKHA 121
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,107,115
Number of Sequences: 164201
Number of extensions: 549856
Number of successful extensions: 2055
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1939
Number of HSP's gapped (non-prelim): 135
length of query: 141
length of database: 59,974,054
effective HSP length: 99
effective length of query: 42
effective length of database: 43,718,155
effective search space: 1836162510
effective search space used: 1836162510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC148996.1