BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148970.11 + phase: 0
(382 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YEBA_ECOLI (P24204) Hypothetical metalloprotease yebA precursor ... 35 0.24
COX2_WHEAT (P00413) Cytochrome c oxidase polypeptide II (EC 1.9.... 34 0.54
COX2_ORYSA (P04373) Cytochrome c oxidase polypeptide II (EC 1.9.... 34 0.71
COX2_PEA (P08744) Cytochrome c oxidase polypeptide II (EC 1.9.3.1) 32 2.1
LTS2_HUMAN (Q9NRM7) Serine/threonine protein kinase LATS2 (EC 2.... 32 2.7
Y831_METJA (Q58241) Hypothetical protein MJ0831 31 6.0
COX2_MAIZE (P00412) Cytochrome c oxidase polypeptide II (EC 1.9.... 31 6.0
EPN3_MOUSE (Q91W69) Epsin 3 (EPS-15 interacting protein 3) 30 7.8
>YEBA_ECOLI (P24204) Hypothetical metalloprotease yebA precursor (EC
3.4.24.-) (ORFU)
Length = 440
Score = 35.4 bits (80), Expect = 0.24
Identities = 15/26 (57%), Positives = 19/26 (72%)
Query: 164 HRVLGGSVTLLTLDDVCWRPYEEHRE 189
HRV+ GS+T+LTL WRPY HR+
Sbjct: 19 HRVMLGSLTVLTLAVAVWRPYVYHRD 44
>COX2_WHEAT (P00413) Cytochrome c oxidase polypeptide II (EC
1.9.3.1)
Length = 260
Score = 34.3 bits (77), Expect = 0.54
Identities = 25/101 (24%), Positives = 42/101 (40%), Gaps = 5/101 (4%)
Query: 266 EDTWRVADGYVLWYTRVSHPQILPPIPGDLLRPANEEQIIAEQW---QRYEARNSPDTYD 322
E W + +L + + +L + G L+ PA + I QW Y NS D
Sbjct: 84 EIIWTIFPSVILLFIAIPSFALLYSMDGVLVDPAITIKAIGHQWYWTYEYSDYNSSDEQS 143
Query: 323 MV--SGAVAYADAQLGQEEVMSMTPQQSFEAITHMREQIAP 361
+ S + D +LGQ ++ + + A TH+R + P
Sbjct: 144 LTFDSYTIPEDDPELGQSRLLEVDNRVVVPAKTHLRMIVTP 184
>COX2_ORYSA (P04373) Cytochrome c oxidase polypeptide II (EC
1.9.3.1)
Length = 260
Score = 33.9 bits (76), Expect = 0.71
Identities = 29/117 (24%), Positives = 45/117 (37%), Gaps = 17/117 (14%)
Query: 262 EQAGEDTWRVADGYVLWYTRVSHPQILP------------PIPGDLLRPANEEQIIAEQW 309
EQ R+ G + R P ++P + G L+ PA + I QW
Sbjct: 68 EQTNPIPQRIVHGTTIEIIRTIFPSVIPLFIAIPSFALLYSMDGVLVDPAITIKAIGHQW 127
Query: 310 QR---YEARNSPDTYDMV--SGAVAYADAQLGQEEVMSMTPQQSFEAITHMREQIAP 361
R Y NS D + S + D +LGQ ++ + + A TH+R + P
Sbjct: 128 YRSYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDNRVVVPAKTHLRMIVTP 184
>COX2_PEA (P08744) Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Length = 258
Score = 32.3 bits (72), Expect = 2.1
Identities = 28/109 (25%), Positives = 43/109 (38%), Gaps = 17/109 (15%)
Query: 270 RVADGYVLWYTRVSHPQILP------------PIPGDLLRPANEEQIIAEQWQR---YEA 314
R+ G + R P I+P + G L+ PA + I QW R Y
Sbjct: 73 RIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDGVLVDPAMTIKAIGHQWYRTYEYSD 132
Query: 315 RNSPDTYDMV--SGAVAYADAQLGQEEVMSMTPQQSFEAITHMREQIAP 361
NS D + S + D +LGQ ++ + + A TH+R + P
Sbjct: 133 YNSSDEQSLTFDSYTIPEDDLELGQSGLLEVDNRVVVPAKTHLRIIVTP 181
>LTS2_HUMAN (Q9NRM7) Serine/threonine protein kinase LATS2 (EC
2.7.1.37) (Large tumor suppressor homolog 2)
(Serine/threonine kinase kpm) (Kinase phosphorylated
during mitosis protein) (Warts-like kinase)
Length = 1088
Score = 32.0 bits (71), Expect = 2.7
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 17/103 (16%)
Query: 267 DTWRVADGYVLWYTRVSHPQILPPIPGDLLRPANEEQIIAEQWQRY-----EARNSPDTY 321
D W V G +L+ V P L P P E Q+ W+ + + SP+
Sbjct: 895 DWWSV--GVILFEMLVGQPPFLAPTP-------TETQLKVINWENTLHIPAQVKLSPEAR 945
Query: 322 DMVSGAVAYADAQLGQEEVMSMTPQQSFEAI---THMREQIAP 361
D+++ AD +LG+ + F AI + +R+Q AP
Sbjct: 946 DLITKLCCSADHRLGRNGADDLKAHPFFSAIDFSSDIRKQPAP 988
>Y831_METJA (Q58241) Hypothetical protein MJ0831
Length = 432
Score = 30.8 bits (68), Expect = 6.0
Identities = 10/28 (35%), Positives = 18/28 (63%)
Query: 207 VRRVYRHLSERVLRQYGYVQTIPRHPTD 234
+ +V + + E++L YGY++ I H TD
Sbjct: 8 IEKVTKAIKEKILNHYGYIRVITHHDTD 35
>COX2_MAIZE (P00412) Cytochrome c oxidase polypeptide II (EC
1.9.3.1)
Length = 260
Score = 30.8 bits (68), Expect = 6.0
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 266 EDTWRVADGYVLWYTRVSHPQILPPIPGDLLRPANEEQIIAEQW---QRYEARNSPDTYD 322
E W + +L + + +L + G L+ PA + I QW Y NS D
Sbjct: 84 EIIWTIFPSVILLFIAIPSFALLYSMDGVLVDPAITIKAIGHQWYWTYEYSDYNSSDEQS 143
Query: 323 MV--SGAVAYADAQLGQEEVMSMTPQQSFEAITHMR 356
+ S + D +LGQ ++ + + A TH+R
Sbjct: 144 LTFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLR 179
>EPN3_MOUSE (Q91W69) Epsin 3 (EPS-15 interacting protein 3)
Length = 636
Score = 30.4 bits (67), Expect = 7.8
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 314 ARNSPDTYDMVSGAVAYADAQLGQEEVMSMTPQQSFEAITHMREQIAPILTRRRAQRPRR 373
+R SP +Y S + YA ++ PQ S E ++ Q+A ++R A+RP
Sbjct: 172 SRGSPSSYTSASSSPRYAS------DLEQARPQTSGEE--ELQLQLALAMSREEAERPVP 223
Query: 374 RHHHQDQD 381
H+D+D
Sbjct: 224 PASHRDED 231
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.139 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,138,950
Number of Sequences: 164201
Number of extensions: 2082481
Number of successful extensions: 4242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4239
Number of HSP's gapped (non-prelim): 8
length of query: 382
length of database: 59,974,054
effective HSP length: 112
effective length of query: 270
effective length of database: 41,583,542
effective search space: 11227556340
effective search space used: 11227556340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC148970.11