BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148969.6 + phase: 0
(280 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DEFM_LYCES (Q9FUZ0) Peptide deformylase, mitochondrial precursor... 243 3e-64
DEFM_ARATH (Q9FV53) Peptide deformylase, mitochondrial precursor... 242 8e-64
DEF1_GLOVI (Q7NJV3) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1) ... 143 4e-34
DEFM_HUMAN (Q9HBH1) Peptide deformylase, mitochondrial precursor... 133 4e-31
DEF3_STRAW (Q825U9) Peptide deformylase 3 (EC 3.5.1.88) (PDF 3) ... 121 2e-27
DEF1_STRCO (Q9RD27) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1) ... 120 4e-27
DEF1_BIFLO (Q8G534) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1) ... 117 3e-26
DEF2_STRAW (Q826Q0) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2) ... 112 1e-24
DEF_LEPIN (Q93LE9) Peptide deformylase (EC 3.5.1.88) (PDF) (Poly... 100 3e-21
DEF2_PSEPK (Q88EA7) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2) ... 100 7e-21
DEF2_PSESM (Q886I1) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2) ... 97 4e-20
DEF_RHIME (Q92SH6) Peptide deformylase (EC 3.5.1.88) (PDF) (Poly... 95 2e-19
DEF2_BORPA (Q7W4K0) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2) ... 94 5e-19
DEF1_BORPE (Q7W0Q0) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1) ... 94 5e-19
DEF2_BORBR (Q7WG25) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2) ... 93 6e-19
DEF1_NITEU (Q82TW4) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1) ... 93 6e-19
DEF2_ANASP (Q8YVH1) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2) ... 92 1e-18
DEF2_STRCO (Q9FCA2) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2) ... 92 1e-18
DEF_BRUSU (P63914) Peptide deformylase (EC 3.5.1.88) (PDF) (Poly... 91 2e-18
DEF_BRUME (P63913) Peptide deformylase (EC 3.5.1.88) (PDF) (Poly... 91 2e-18
>DEFM_LYCES (Q9FUZ0) Peptide deformylase, mitochondrial precursor
(EC 3.5.1.88) (PDF) (Polypeptide deformylase)
Length = 277
Score = 243 bits (621), Expect = 3e-64
Identities = 122/203 (60%), Positives = 158/203 (77%), Gaps = 3/203 (1%)
Query: 59 SFSSASSETAF---LSKTLKSELPHIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMIL 115
++SSA++ + L + K +P IV+AGDPVLHEP++++ EI S++IQKII+ M+
Sbjct: 66 NYSSATARAGWFLGLGEKKKQAMPDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEMVK 125
Query: 116 VMRNAPGISLSAQKIGIPLRIIVLEEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIK 175
VMRNAPG+ L+A +IGIPL+IIVLE+ E + ++ K DRRPF LLVI+NPKLK K
Sbjct: 126 VMRNAPGVGLAAPQIGIPLKIIVLEDTNEYISYAPKDETKAQDRRPFGLLVIINPKLKKK 185
Query: 176 SNKTFLFFEGCLSVHGFQAVVERYLDVEVEGFDRYGEPIKINASGWHARILQHECDHLDG 235
NKT LFFEGCLSV GF+AVVER+L+VEV G DR G+ IK++ASGW ARILQHE DHLDG
Sbjct: 186 GNKTALFFEGCLSVDGFRAVVERHLEVEVTGLDRNGKAIKVDASGWQARILQHEYDHLDG 245
Query: 236 TLYVDKMVPRTFRSWENINMSIA 258
TLYVDKM PRTFR+ EN+++ +A
Sbjct: 246 TLYVDKMAPRTFRTVENLDLPLA 268
>DEFM_ARATH (Q9FV53) Peptide deformylase, mitochondrial precursor
(EC 3.5.1.88) (PDF) (Polypeptide deformylase)
Length = 259
Score = 242 bits (617), Expect = 8e-64
Identities = 136/250 (54%), Positives = 171/250 (68%), Gaps = 6/250 (2%)
Query: 15 MEAARRLASRLRVVPMMLVFSNAT--VSSSSSSCNTETPPSNTKLSSFSSASSETAFL-- 70
ME R++ RL V + + VS SS N SS SS S++ +L
Sbjct: 1 METLFRVSLRLLPVSAAVTCRSIRFPVSRPGSSHLLNRKLYNLPTSSSSSLSTKAGWLLG 60
Query: 71 --SKTLKSELPHIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQ 128
K K +LP IV +GDPVLHE AREVD EI S++IQKIID MI VMR APG+ L+A
Sbjct: 61 LGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAP 120
Query: 129 KIGIPLRIIVLEEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLS 188
+IG+PLRIIVLE+ KE + +E +RR FDL+V++NP LK +SNK LFFEGCLS
Sbjct: 121 QIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLS 180
Query: 189 VHGFQAVVERYLDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFR 248
V GF+A VERYL+V V G+DR G+ I++NASGW ARILQHECDHLDG LYVDKMVPRTFR
Sbjct: 181 VDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFR 240
Query: 249 SWENINMSIA 258
+ +N+++ +A
Sbjct: 241 TVDNLDLPLA 250
>DEF1_GLOVI (Q7NJV3) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1)
(Polypeptide deformylase 1)
Length = 227
Score = 143 bits (361), Expect = 4e-34
Identities = 71/172 (41%), Positives = 109/172 (63%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
IV+ GDPVL A+ ++ EI S+ IQ++I M MR APG+ L+A ++G+ ++++V+E
Sbjct: 48 IVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVIE 107
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
+ E + + + +R P V++NP L ++ ++ +FFEGCLS+ G+Q +V R
Sbjct: 108 DRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVARAR 167
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRSWEN 252
V VE D P+ I A GW+ARILQHE DHL+G L VD+M +TF + EN
Sbjct: 168 VVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMDLQTFSTLEN 219
>DEFM_HUMAN (Q9HBH1) Peptide deformylase, mitochondrial precursor
(EC 3.5.1.88) (PDF) (Polypeptide deformylase)
Length = 243
Score = 133 bits (335), Expect = 4e-31
Identities = 67/177 (37%), Positives = 101/177 (56%), Gaps = 2/177 (1%)
Query: 80 HIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVL 139
H+ Q GDPVL A V+ +++ ++Q++ ++ VMR + LSA ++G+P +++ L
Sbjct: 66 HVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLAL 125
Query: 140 EEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERY 199
E P+ + PF L V +NP L++ ++ F EGC SV GF A V R+
Sbjct: 126 ELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRF 185
Query: 200 LDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRS--WENIN 254
V++ G D GE + ASGW ARI+QHE DHL G L++DKM RTF + W +N
Sbjct: 186 QAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTFTNVYWMKVN 242
>DEF3_STRAW (Q825U9) Peptide deformylase 3 (EC 3.5.1.88) (PDF 3)
(Polypeptide deformylase 3)
Length = 224
Score = 121 bits (304), Expect = 2e-27
Identities = 68/171 (39%), Positives = 96/171 (55%), Gaps = 5/171 (2%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
IV AGDPVL A D ++ + + ++ + L M APG+ L+A ++G+ LRI V+E
Sbjct: 35 IVAAGDPVLRRGAEPYD-GQLGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVIE 93
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
+P EEV + R P V++NP + + FFEGCLSV G+QAVV R
Sbjct: 94 DPAP----VPEEVGAVRGRVPQPFRVLVNPSYEAVGSDRAAFFEGCLSVPGWQAVVARPA 149
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRSWE 251
V + D +G + +GW ARI+QHE DHLDG LY+D+ R+ S E
Sbjct: 150 RVRLTALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDRAELRSLSSNE 200
>DEF1_STRCO (Q9RD27) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1)
(Polypeptide deformylase 1)
Length = 218
Score = 120 bits (301), Expect = 4e-27
Identities = 66/169 (39%), Positives = 96/169 (56%), Gaps = 5/169 (2%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
IV AGDPVL A D ++ ++ ++ + L M APG+ L+A ++G+ LR+ V+E
Sbjct: 26 IVAAGDPVLRRAAEPYD-GQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 84
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
+P +EV R P V++NP + FFEGCLSV G+QAVV R+
Sbjct: 85 DPAP----VPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHA 140
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRS 249
+V + D +G + +GW ARI+QHE DHLDGTLY+D+ R+ S
Sbjct: 141 EVRLRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDRAELRSLAS 189
>DEF1_BIFLO (Q8G534) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1)
(Polypeptide deformylase 1)
Length = 217
Score = 117 bits (293), Expect = 3e-26
Identities = 71/180 (39%), Positives = 105/180 (57%), Gaps = 9/180 (5%)
Query: 75 KSELPHIVQAGDPVLHEPAREVDHS-EINSDKIQKIIDGMILVMRNAPGISLSAQKIGIP 133
K +L IVQAG+PVL + R V ++ +++ + K+ID M M APG+ L+A +IG+
Sbjct: 25 KEKLLPIVQAGEPVLRQ--RTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLG 82
Query: 134 LRIIVLEEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQ 193
L + V+E+ + + E+ + F VI+NP K S+KT F+EGCLS G+Q
Sbjct: 83 LALAVVEDHVRDDEDDPREIAE------FPFHVIINPSYKPTSDKTASFYEGCLSFDGYQ 136
Query: 194 AVVERYLDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRSWENI 253
AV +R+LD+ E D G+ GW ARI QHE DHL G LY+D+ R+ + EN+
Sbjct: 137 AVRKRWLDITAEWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAEIRSLTTNENL 196
>DEF2_STRAW (Q826Q0) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2)
(Polypeptide deformylase 2)
Length = 186
Score = 112 bits (279), Expect = 1e-24
Identities = 63/159 (39%), Positives = 90/159 (55%), Gaps = 19/159 (11%)
Query: 85 GDPVLHEPAREV-DHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLEEPK 143
GDPVLH P EV DH ++ ++++ M M A G+ L+A +IG+PLR+ V + P
Sbjct: 20 GDPVLHAPCEEVTDHGP----ELARLVEDMFATMYAANGVGLAANQIGVPLRVFVYDCPD 75
Query: 144 ENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYLDVE 203
+ E+V + ++NP+L EGCLS+ G +A ERY
Sbjct: 76 D------EDVRHVGH--------VVNPRLIEADGVVLRGPEGCLSLPGLEAGTERYDRAV 121
Query: 204 VEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKM 242
VEGF GEP+++ +GW AR LQHECDHLDG +YVD++
Sbjct: 122 VEGFTTDGEPVRVLGTGWFARCLQHECDHLDGGVYVDRV 160
>DEF_LEPIN (Q93LE9) Peptide deformylase (EC 3.5.1.88) (PDF)
(Polypeptide deformylase)
Length = 178
Score = 100 bits (250), Expect = 3e-21
Identities = 58/162 (35%), Positives = 87/162 (52%), Gaps = 9/162 (5%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
I++ GDP+L + + V EI + + +K+I M MR+A G+ L+A +IGI +I+V+
Sbjct: 6 ILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVG 65
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
Y T +V + I ILNP + + T F+EGCLSV G + VER
Sbjct: 66 SEDNERYPGTPDVPERI---------ILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPN 116
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKM 242
+ ++ D G G+ A + QHECDHL G LYVD++
Sbjct: 117 QIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRL 158
>DEF2_PSEPK (Q88EA7) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2)
(Polypeptide deformylase 2)
Length = 178
Score = 99.8 bits (247), Expect = 7e-21
Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 9/162 (5%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
I++ GD L A V + S ++Q++ID M MR+ G+ L+A ++GI L++++
Sbjct: 5 ILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIFG 64
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
+ Y E V + I +LNP + S++ +EGCLSV G + VV R+
Sbjct: 65 FERSERYPDAEAVPQTI---------LLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFK 115
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKM 242
+ +G D G PI A G+HAR++QHECDHL G LY ++
Sbjct: 116 HICYQGIDPQGSPINRFADGFHARVVQHECDHLIGRLYPSRI 157
>DEF2_PSESM (Q886I1) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2)
(Polypeptide deformylase 2)
Length = 179
Score = 97.1 bits (240), Expect = 4e-20
Identities = 57/163 (34%), Positives = 90/163 (54%), Gaps = 9/163 (5%)
Query: 80 HIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVL 139
+I++ GD L A V S +++ +I M M + G+ L+A +IGI L++++
Sbjct: 4 NILKMGDERLLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIF 63
Query: 140 EEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERY 199
+ Y E V + I P L+ L+P ++ +EGCLSV G + +V+RY
Sbjct: 64 GFERSERYPQAEAVPQTILLNP--LITPLHPGVEEG-------WEGCLSVPGLRGMVDRY 114
Query: 200 LDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKM 242
+ EGFD G+PI+ A G+HAR++QHECDHL G LY ++
Sbjct: 115 QSIRYEGFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRI 157
>DEF_RHIME (Q92SH6) Peptide deformylase (EC 3.5.1.88) (PDF)
(Polypeptide deformylase)
Length = 174
Score = 95.1 bits (235), Expect = 2e-19
Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 86 DPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLEEPKEN 145
DPVL + + V+ I++D I+++ D M+ M +APGI L+A +IG+P R++VL+ KE
Sbjct: 11 DPVLRQVSTPVE--TIDAD-IRRLADDMLETMYDAPGIGLAAIQIGVPKRLLVLDVTKEG 67
Query: 146 LYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYLDVEVE 205
+++P LV +NPK+ S + ++ EGCLS+ + A VER + VE
Sbjct: 68 E-----------EKQP---LVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVE 113
Query: 206 GFDRYGEPIKINASGWHARILQHECDHLDGTLYVD 240
DR G+ + A G A LQHE DHL+G L++D
Sbjct: 114 YVDREGKEQAVEAEGLLATCLQHEIDHLNGVLFID 148
>DEF2_BORPA (Q7W4K0) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2)
(Polypeptide deformylase 2)
Length = 176
Score = 93.6 bits (231), Expect = 5e-19
Identities = 53/158 (33%), Positives = 89/158 (55%), Gaps = 11/158 (6%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
I++ GDP L A V+ + + +++ +ID M M +A G+ L+A +IG+ L++++
Sbjct: 5 ILKMGDPRLLRVAAPVERYD--TPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFG 62
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
+ + Y V + I + NP ++ S++ +EGCLSV G + +V RY
Sbjct: 63 FERNDRYPDAPAVPRTI---------LCNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYR 113
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLY 238
+ G+D G+ I+ A G+HAR++QHECDHL G LY
Sbjct: 114 HIRYSGYDPAGQRIEREAEGFHARVVQHECDHLIGRLY 151
>DEF1_BORPE (Q7W0Q0) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1)
(Polypeptide deformylase 1)
Length = 176
Score = 93.6 bits (231), Expect = 5e-19
Identities = 53/158 (33%), Positives = 89/158 (55%), Gaps = 11/158 (6%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
I++ GDP L A V+ + + +++ +ID M M +A G+ L+A +IG+ L++++
Sbjct: 5 ILKMGDPRLLRVAAPVERYD--TPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFG 62
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
+ + Y V + I + NP ++ S++ +EGCLSV G + +V RY
Sbjct: 63 FERNDRYPDAPAVPRTI---------LCNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYR 113
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLY 238
+ G+D G+ I+ A G+HAR++QHECDHL G LY
Sbjct: 114 HIRYSGYDPAGQRIEREAEGFHARVVQHECDHLIGRLY 151
>DEF2_BORBR (Q7WG25) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2)
(Polypeptide deformylase 2)
Length = 176
Score = 93.2 bits (230), Expect = 6e-19
Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 11/158 (6%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
I++ GDP L A V+ + + +++ +ID M M +A G+ L+A +IG+ L++++
Sbjct: 5 ILKMGDPRLLRVAAPVERYD--TPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFG 62
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
+ + Y V + I + NP ++ S + +EGCLSV G + +V RY
Sbjct: 63 FERNDRYPDAPAVPRTI---------LCNPVIEPLSGEMEDGWEGCLSVPGLRGLVPRYR 113
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLY 238
+ G+D G+ I+ A G+HAR++QHECDHL G LY
Sbjct: 114 HIRYSGYDPAGQRIEREAEGFHARVVQHECDHLIGRLY 151
>DEF1_NITEU (Q82TW4) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1)
(Polypeptide deformylase 1)
Length = 176
Score = 93.2 bits (230), Expect = 6e-19
Identities = 53/158 (33%), Positives = 86/158 (53%), Gaps = 11/158 (6%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
+++ GDP L +PAR VD + + +++ ++ M M G L+A +IG+ L++++
Sbjct: 5 VLKMGDPCLLQPARRVD--QFGTPELEALLQDMQDTMAALNGAGLAAPQIGVSLQVVIFG 62
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
Y E V PF +L+ NP L + + +EGCLS+ G + +V RY
Sbjct: 63 VEHSPRYPDAESV-------PFTVLI--NPVLTPLTEQMEEDWEGCLSIPGMRGLVPRYT 113
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLY 238
+ +G D G I +G+HAR++QHECDHL+G LY
Sbjct: 114 RLRYQGVDAAGASIDRTVTGFHARVVQHECDHLNGILY 151
>DEF2_ANASP (Q8YVH1) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2)
(Polypeptide deformylase 2)
Length = 179
Score = 92.4 bits (228), Expect = 1e-18
Identities = 54/169 (31%), Positives = 91/169 (52%), Gaps = 11/169 (6%)
Query: 74 LKSELPHIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIP 133
+ EL I+Q G+P L + A V++ I+ IQ++ID +I + A G+ +++ ++
Sbjct: 1 MNPELLPIIQLGNPTLRQKAAWVEN--IHDATIQQLIDDLIATVAKANGVGIASPQVAQS 58
Query: 134 LRIIVLEEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQ 193
R+ ++ Y + E+ ++NPK+ S + +EGCLSV G +
Sbjct: 59 YRLFIVASRPNPRYPHAPEMEPT---------AMINPKIVGHSTEIVEGWEGCLSVPGIR 109
Query: 194 AVVERYLDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKM 242
+V R+ +EVE DRYG K + + ARI QHE DHLDG L++D++
Sbjct: 110 GLVPRHQAIEVEYTDRYGNLQKQTLTDFVARIFQHEFDHLDGVLFIDRV 158
>DEF2_STRCO (Q9FCA2) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2)
(Polypeptide deformylase 2)
Length = 179
Score = 92.0 bits (227), Expect = 1e-18
Identities = 58/176 (32%), Positives = 88/176 (49%), Gaps = 20/176 (11%)
Query: 85 GDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLEEPKE 144
GDPVLH EV ++ +++ + M A G+ L+A ++G +R+ V + P +
Sbjct: 20 GDPVLHARCAEVTDF---GPELAALVEDLFATMYAAHGVGLAANQVGEAVRVFVYDCPDD 76
Query: 145 NLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYLDVEV 204
D R L ++NP+L EGCLS+ G +A ERY + V
Sbjct: 77 E------------DER--HLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVV 122
Query: 205 EGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRSWENINMSIARA 260
GF GEP+ + +G+ AR LQHECDHL+G +Y D++ R R + +ARA
Sbjct: 123 TGFTVAGEPVTVRGTGFFARCLQHECDHLEGRVYADRLTGRRHR---KLMRQVARA 175
>DEF_BRUSU (P63914) Peptide deformylase (EC 3.5.1.88) (PDF)
(Polypeptide deformylase)
Length = 175
Score = 91.3 bits (225), Expect = 2e-18
Identities = 54/155 (34%), Positives = 84/155 (53%), Gaps = 17/155 (10%)
Query: 86 DPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLEEPKEN 145
DPVL + ++ V+ + D+++K M M +APGI L+A ++G P+R++V++ KE
Sbjct: 11 DPVLRQVSKPVERFD---DQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEG 67
Query: 146 LYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYLDVEVE 205
P + +NP + S+K + EGCLS+ + A VER V+V
Sbjct: 68 --------------EPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVN 113
Query: 206 GFDRYGEPIKINASGWHARILQHECDHLDGTLYVD 240
FD G+P + A G A LQHE DHL+G L++D
Sbjct: 114 YFDADGKPQSMEADGLMATCLQHEIDHLNGVLFID 148
>DEF_BRUME (P63913) Peptide deformylase (EC 3.5.1.88) (PDF)
(Polypeptide deformylase)
Length = 175
Score = 91.3 bits (225), Expect = 2e-18
Identities = 54/155 (34%), Positives = 84/155 (53%), Gaps = 17/155 (10%)
Query: 86 DPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLEEPKEN 145
DPVL + ++ V+ + D+++K M M +APGI L+A ++G P+R++V++ KE
Sbjct: 11 DPVLRQVSKPVERFD---DQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEG 67
Query: 146 LYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYLDVEVE 205
P + +NP + S+K + EGCLS+ + A VER V+V
Sbjct: 68 --------------EPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVN 113
Query: 206 GFDRYGEPIKINASGWHARILQHECDHLDGTLYVD 240
FD G+P + A G A LQHE DHL+G L++D
Sbjct: 114 YFDADGKPQSMEADGLMATCLQHEIDHLNGVLFID 148
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.133 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,060,037
Number of Sequences: 164201
Number of extensions: 1215174
Number of successful extensions: 5248
Number of sequences better than 10.0: 195
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 4781
Number of HSP's gapped (non-prelim): 270
length of query: 280
length of database: 59,974,054
effective HSP length: 109
effective length of query: 171
effective length of database: 42,076,145
effective search space: 7195020795
effective search space used: 7195020795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC148969.6