BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148819.3 + phase: 0 /pseudo/partial
         (880 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GOP1_CAEEL (P46578) Hypothetical protein gop-1                        151  8e-36
YJBC_SCHPO (O74949) Hypothetical protein C553.12c in chromosome III    35  0.87
SYL_CAUCR (Q9A217) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-...    33  3.3
OMBP_MANSE (P31420) Ommochrome-binding protein precursor (OBP) (...    32  9.6
MCR_SHEEP (Q9BDJ7) Mineralocorticoid receptor (MR) (Fragment)          32  9.6

>GOP1_CAEEL (P46578) Hypothetical protein gop-1
          Length = 892

 Score =  151 bits (381), Expect = 8e-36
 Identities = 96/308 (31%), Positives = 179/308 (57%), Gaps = 26/308 (8%)

Query: 3   VIEALRSIAELVTYGDQHDPTFFEFFMEKQVVGDFVRILKLSRTISIPLQLLQTVSIMIQ 62
           ++EALR+IAE++ +GDQ+D + F+FF+E+Q++  F++I++   T  + +QLLQT++I+ +
Sbjct: 44  LVEALRAIAEILIWGDQNDASVFDFFLERQMLLYFLKIMEQGNT-PLNVQLLQTLNILFE 102

Query: 63  NLQSEHAIYYMFSNEHMNYLITYSFDFRNEELLSYYISFLRAIGGKLNKNTISLLVKTRN 122
           N++ E ++Y++ SN H+N +I++ FD +N+E+++YYISFL+ +  KLN  TI       N
Sbjct: 103 NIRHETSLYFLLSNNHVNSIISHKFDLQNDEIMAYYISFLKTLSFKLNPATIHFFF---N 159

Query: 123 DEVVSFPLYVEAIRFAFHEESMIRAAVRAVTLNVYHVGDDSVNRYITSEPHT-DYFSNLV 181
           +    FPL VE ++     ESM+R AVR + LN+  V DDS+   I +  HT +Y S L+
Sbjct: 160 ETTEEFPLLVEVLKLYNWNESMVRIAVRNILLNIVRVQDDSM--IIFAIKHTKEYLSELI 217

Query: 182 SFFRKQCMDLN---RLISETLKNPGPDSNSTVTTAVDEIEDNLYYFSDIISAGIPDVERL 238
                  ++++   R     L N        +   VD++ D ++Y  +++     DVE  
Sbjct: 218 DSLVGLSLEMDTFVRSAENVLAN-----RERLRGKVDDLIDLIHYIGELL-----DVE-A 266

Query: 239 ITDSILMLL----IFPVLLPSLRTVADN-DMQSGVVTSLYLLCCILRIVKIKDLANTIVA 293
           + +S+ +L+    + P+LL S+    DN  +    +++L+     L IV+  +   T ++
Sbjct: 267 VAESLSILVTTRYLSPLLLSSISPRRDNHSLLLTPISALFFFSEFLLIVRHHETIYTFLS 326

Query: 294 ALYYPLES 301
           +  +  ++
Sbjct: 327 SFLFDTQN 334


>YJBC_SCHPO (O74949) Hypothetical protein C553.12c in chromosome III
          Length = 521

 Score = 35.0 bits (79), Expect = 0.87
 Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 20/176 (11%)

Query: 149 VRAVTLNVYHVGDDSVNRYITSEPHTDYFSNLVSFFRKQCMDLNRLISETLKNPGPDSNS 208
           V  VTL VY VG+   N Y+++ PH+   + +  +     + L  L+S  + N    S +
Sbjct: 269 VLLVTLLVYIVGEYLTNLYMSTLPHSSTVAIMYVYSWTGTVSLCNLVSSWILNTKTHSYA 328

Query: 209 TVTTAVDEIEDNLYYFSDIISAGIPDVERL----ITDSILMLLIFPVLLPS-----LRTV 259
            VT      E  L  +   + A +   ++     I  S+ M+ + P++  S     L  +
Sbjct: 329 LVTVFKLYFELTLQVYVRNLYARLESPQQFVLVQIASSLTMMSVIPLITMSRTVFRLNVL 388

Query: 260 ADNDMQSGVV------TSLYLLCCILRIVKIKDLANTIVA-----ALYYPLESFTK 304
               M S VV       + Y+ C    +  +  L  +++      A  YP  SF+K
Sbjct: 389 MTKSMDSYVVYRKNMGRNFYVKCVASNVSMLSFLGWSLILHFGSNAPLYPYFSFSK 444


>SYL_CAUCR (Q9A217) Leucyl-tRNA synthetase (EC 6.1.1.4)
           (Leucine--tRNA ligase) (LeuRS)
          Length = 861

 Score = 33.1 bits (74), Expect = 3.3
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 397 LQTKELDESMLDGLGILPQRKQQKKLLLQALVGEASGEEQLFSSESSLTRDGIACGLDVY 456
           L+  +  ++++DGL  L +   + +L+ +  +G + G    F  +     DG+A GL+VY
Sbjct: 193 LRITDYADALIDGLKTLDRWPDKVRLMQENWIGRSKGLRFKFQFDGEAP-DGMAEGLEVY 251

Query: 457 LNKIKEQYGVSF 468
             +    +G SF
Sbjct: 252 TTRPDTLFGASF 263


>OMBP_MANSE (P31420) Ommochrome-binding protein precursor (OBP)
           (YCP)
          Length = 274

 Score = 31.6 bits (70), Expect = 9.6
 Identities = 25/76 (32%), Positives = 38/76 (49%), Gaps = 9/76 (11%)

Query: 153 TLNVYHVGDDSVNRYITSEPHTDYFSNLVSFFRKQCMD--LNRLISETLKNPGPDSNSTV 210
           T  V  +GD +VN +        YFS+ V F+     D  +N+LISET    G DS   +
Sbjct: 194 TNKVIDLGDYNVNAFTKDSKGKLYFSSPVGFYAVNEADRKMNKLISET----GEDS---I 246

Query: 211 TTAVDEIEDNLYYFSD 226
             A  + +DN+ Y ++
Sbjct: 247 WGAAFDKDDNIVYSNE 262


>MCR_SHEEP (Q9BDJ7) Mineralocorticoid receptor (MR) (Fragment)
          Length = 258

 Score = 31.6 bits (70), Expect = 9.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 631 PKCMLFPPRMFFSEEDIPEGSSFTAGERMHELVKVFVLLH 670
           P+ + FPP + F+E+ +   + F   + MH ++  FV LH
Sbjct: 98  PQFLYFPPDLVFNEKKMHHSAMFELCQGMHHILLQFVRLH 137


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.323    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,421,944
Number of Sequences: 164201
Number of extensions: 4188504
Number of successful extensions: 9643
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9638
Number of HSP's gapped (non-prelim): 6
length of query: 880
length of database: 59,974,054
effective HSP length: 119
effective length of query: 761
effective length of database: 40,434,135
effective search space: 30770376735
effective search space used: 30770376735
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 70 (31.6 bits)