BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148816.5 + phase: 0 /pseudo
         (211 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310...    51  2e-06
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog               48  1e-05
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog               41  0.002
YLJ7_CAEEL (P34370) Hypothetical protein C50C3.7 in chromosome III     34  0.29
SYIC_SCHPO (O13651) Isoleucyl-tRNA synthetase, cytoplasmic (EC 6...    32  1.4
SYM_METJA (Q58659) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth...    29  7.0
MET_HUMAN (P08581) Hepatocyte growth factor receptor precursor (...    29  7.0
I17S_HUMAN (Q9NRM6) Interleukin-17B receptor precursor (IL-17B r...    29  9.2

>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
           (ORF154)
          Length = 154

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 123 SMPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKE-NGGVRVKD 181
           ++P++ +S  ++   + K++      F W      +KISWV W+ +C+ KE +GG+  +D
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 182 IRVMNISLLAKWRWRLI 198
           +   N +LLAK  +R+I
Sbjct: 62  LGWFNQALLAKQSFRII 78


>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
          Length = 1259

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 39/201 (19%), Positives = 86/201 (42%), Gaps = 9/201 (4%)

Query: 6   YADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMACDFLNC 65
           +ADD +   +  + +   +  ++  F  VSG KIN  KS       +    +     L  
Sbjct: 699 FADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPF 758

Query: 66  SAGSITFKYLGLPVGANMRSM--STWEPLVETIGGRLNTWSTRYISFGGRIVLLNSVLNS 123
           +  S   KYLG+ +  +++ +    ++PL+  I    N W     S+ GRI ++   +  
Sbjct: 759 TIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWVGRINIVKMAILP 818

Query: 124 MPIFYLSF--LKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVKD 181
             I+  +   +K+ +  +  + +    F+W      +K + +   ++ Q+ + GG+ + D
Sbjct: 819 KVIYRFNAIPIKLPMTFFTELEKTTLKFIW-----NQKRAHIAKSTLSQKNKAGGITLPD 873

Query: 182 IRVMNISLLAKWRWRLIDGRE 202
            ++   + + K  W     R+
Sbjct: 874 FKLYYKATVTKTAWYWYQNRD 894


>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
          Length = 1260

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 41/201 (20%), Positives = 86/201 (42%), Gaps = 9/201 (4%)

Query: 6   YADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMACDFLNC 65
           +ADD +   + +  +   +  +++ +  VSG KIN  KS       +        D +  
Sbjct: 699 FADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSIPF 758

Query: 66  SAGSITFKYLGLPVGANMRSM--STWEPLVETIGGRLNTWSTRYISFGGRIVLLNSVLNS 123
           +      KYLG+ +  +++ +    +E L + I   +N W     S+ GRI ++   +  
Sbjct: 759 TVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSILP 818

Query: 124 MPIFYLSF--LKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVKD 181
             I+  +   +K  +  +K + +I   F+W      +K   +    +  + + GG+ + D
Sbjct: 819 KAIYNFNAIPIKAPLSYFKDLEKIILHFIW-----NQKKPQIAKTLLSNKNKAGGITLPD 873

Query: 182 IRVMNISLLAKWRWRLIDGRE 202
           +R+   S++ K  W     RE
Sbjct: 874 LRLYYKSIVIKTAWYWHKNRE 894


>YLJ7_CAEEL (P34370) Hypothetical protein C50C3.7 in chromosome III
          Length = 398

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 94  ETIGGRLNTWSTRYISF---GGRIVLLNSVLNSMPIFYLSFLKMLVGVWKRI-VRIQR*F 149
           ETIGG + TW+T   S+    GR+VLL     +     +   K L+G  KRI  R QR  
Sbjct: 48  ETIGGAVLTWATTIASWMNTNGRMVLLAKTFQATNQVLIFGRKQLIGQIKRIDYRFQRNT 107

Query: 150 LWGGVGGGK 158
           + GG+ G K
Sbjct: 108 M-GGLTGHK 115


>SYIC_SCHPO (O13651) Isoleucyl-tRNA synthetase, cytoplasmic (EC
           6.1.1.5) (Isoleucine--tRNA ligase) (IleRS)
          Length = 1064

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 27/105 (25%), Positives = 41/105 (38%), Gaps = 21/105 (20%)

Query: 16  ASVQNLWTMKAILRGFQM-------VSGLKINFSKSSLVGINVSEDFMAMACDFLNCSAG 68
           +++++  T  A L+G+ +         GL +       +GI  S+D MAM  D  N    
Sbjct: 56  STIKDSVTRYACLKGYHVERRFGWDTHGLPVEHEIDKKLGITGSDDVMAMGIDKYNAECR 115

Query: 69  SITFKYLGLPVGANMRSMSTWEPLVETIGGRL---NTWSTRYISF 110
            I   Y            S W   VE +G  +   N + T Y SF
Sbjct: 116 KIVMTY-----------ASEWRATVERLGRWIDFDNDYKTLYPSF 149


>SYM_METJA (Q58659) Methionyl-tRNA synthetase (EC 6.1.1.10)
           (Methionine--tRNA ligase) (MetRS)
          Length = 651

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)

Query: 100 LNTWS-TRYISFGGRIVLLNSVLN---SMPIFYLSFLKMLVGVWKR 141
           L+ W  +R IS+G  I   N V+      PI Y+SF KML  +WK+
Sbjct: 222 LHDWDISRDISWGVPIPGTNQVMYVWLEAPIGYISFTKMLGEIWKK 267


>MET_HUMAN (P08581) Hepatocyte growth factor receptor precursor (EC
           2.7.1.112) (Met proto-oncogene tyrosine kinase) (c-met)
           (HGF receptor) (HGF-SF receptor)
          Length = 1390

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 92  LVETIGGRLNTWSTRYISFGGRIVLLNSVLNSM 124
           L+   G  LN+ ++R+IS GG+   L SV NS+
Sbjct: 674 LLTLTGNYLNSGNSRHISIGGKTCTLKSVSNSI 706


>I17S_HUMAN (Q9NRM6) Interleukin-17B receptor precursor (IL-17B
           receptor) (IL-17 receptor homolog 1) (IL-17Rh1)
           (IL17Rh1) (Cytokine receptor CRL4) (UNQ2501/PRO19612)
          Length = 502

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 22  WTMKA-----ILRGFQMVSGLKINFSKSSLVGINVSEDFMAMACDFLNCSAGSITFKYLG 76
           W ++A     +L+  ++    K NF   S V  N +E F          S G  TF Y+G
Sbjct: 70  WVLRADASIRLLKATKICVTGKSNFQSYSCVRCNYTEAFQTQT----RPSGGKWTFSYIG 125

Query: 77  LPVGAN 82
            PV  N
Sbjct: 126 FPVELN 131


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.330    0.142    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,203,948
Number of Sequences: 164201
Number of extensions: 919138
Number of successful extensions: 2377
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2372
Number of HSP's gapped (non-prelim): 10
length of query: 211
length of database: 59,974,054
effective HSP length: 105
effective length of query: 106
effective length of database: 42,732,949
effective search space: 4529692594
effective search space used: 4529692594
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 63 (28.9 bits)