BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148775.1 - phase: 0
(207 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic helix-loop... 44 2e-04
RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous Ar... 44 2e-04
EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABR... 42 0.001
ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein 40 0.003
ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein 38 0.015
YIF5_YEAST (P40523) Hypothetical 70.7 kDa protein in SNP1-GPP1 i... 36 0.055
PIF3_ARATH (O80536) Phytochrome-interacting factor 3 (Phytochrom... 36 0.055
PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4 (Basic heli... 35 0.095
MYC2_CYPCA (Q90342) Myc II protein (C-MYC II) 35 0.16
CBP1_CAEBR (Q6E3D0) Cytoplasmic polyadenylation element binding ... 34 0.28
DRPL_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrop... 33 0.36
DRPL_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atr... 33 0.36
YMH7_CAEEL (P34474) Hypothetical protein F58A4.7 in chromosome III 33 0.61
SMA5_RAT (Q9R1V3) Mothers against decapentaplegic homolog 5 (SMA... 33 0.61
SMA5_HUMAN (Q99717) Mothers against decapentaplegic homolog 5 (S... 33 0.61
BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 prot... 33 0.61
BHB3_RAT (O35779) Class B basic helix-loop-helix protein 3 (bHLH... 33 0.61
BHB3_MOUSE (Q99PV5) Class B basic helix-loop-helix protein 3 (bH... 33 0.61
BHB3_HUMAN (Q9C0J9) Class B basic helix-loop-helix protein 3 (bH... 33 0.61
MYC_BRARE (P52160) Myc protein (c-myc) (zc-Myc) 32 0.80
>TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic
helix-loop-helix protein 42) (bHLH42) (AtbHLH042)
Length = 518
Score = 44.3 bits (103), Expect = 2e-04
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 144 MRDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKVRTKLLISSCCFIINA 203
+ D + R L H+++ERRRREKLNE F LR+++P TK+ ++ +N
Sbjct: 348 LHDNTKDKRLPREDLSHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNH 407
Query: 204 L 204
L
Sbjct: 408 L 408
>RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous
Arabidopsis protein-1) (RAP-1) (Basic helix-loop-helix
protein 6) (bHLH6) (AtbHLH006) (rd22BP1)
Length = 623
Score = 44.3 bits (103), Expect = 2e-04
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 145 RDRNQAARPSSNQ---LHHMISERRRREKLNENFQALRALLPQGTKVRTKLLISSCCFII 201
R + + +P++ + L+H+ +ER+RREKLN+ F ALRA++P +K+ L+ I
Sbjct: 435 RPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYI 494
Query: 202 NAL 204
N L
Sbjct: 495 NEL 497
>EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABRA3)
(Basic helix-loop-helix protein 2) (bHLH2) (AtbHLH002)
(AtMyc-146)
Length = 596
Score = 41.6 bits (96), Expect = 0.001
Identities = 34/112 (30%), Positives = 55/112 (48%), Gaps = 13/112 (11%)
Query: 82 QNVLSTPPSHQHQ----PQ-QNYVAHPEASAFGRYRHDKSPNIGSNFRRQSLMKRSFAFF 136
Q V+ST HQ PQ QN+ + S+F R++ S ++ + K F
Sbjct: 331 QGVISTIFKTTHQLILGPQFQNF---DKRSSFTRWKRSSSVKTLGEKSQKMIKKILF--- 384
Query: 137 RSLNLMRMRDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKV 188
+ LM ++ P +H +SE++RREKLNE F LR+++P +K+
Sbjct: 385 -EVPLMNKKEELLPDTPEETG-NHALSEKKRREKLNERFMTLRSIIPSISKI 434
>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein
Length = 612
Score = 40.4 bits (93), Expect = 0.003
Identities = 20/46 (43%), Positives = 31/46 (66%)
Query: 150 AARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKVRTKLLIS 195
AA+ S +H++SER+RREKLNE F L++LLP +V +++
Sbjct: 409 AAQEMSATKNHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILA 454
>ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein
Length = 610
Score = 38.1 bits (87), Expect = 0.015
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 159 HHMISERRRREKLNENFQALRALLPQGTKVRTKLLIS 195
+H++SER+RREKLNE F L++LLP +V +++
Sbjct: 416 NHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILA 452
>YIF5_YEAST (P40523) Hypothetical 70.7 kDa protein in SNP1-GPP1
intergenic region
Length = 627
Score = 36.2 bits (82), Expect = 0.055
Identities = 36/145 (24%), Positives = 59/145 (39%), Gaps = 33/145 (22%)
Query: 9 SPEYSSLIFNI---PPGTSPP-----QFSPDLTQLGGVNI------------------PP 42
SP Y+S + ++ PP S P FSP+++ NI PP
Sbjct: 165 SPRYASHVSSVTPQPPSASTPPSQFFSFSPEVSLRKNENITPLPTPVPVPVGVPPLAPPP 224
Query: 43 MRPVSNTLLPLQLQQLPQITPTQLYP-TTQIENDVIMRAIQNVLSTPPSHQHQPQQNYVA 101
P S ++LP+ L P P P T + + L++P H P++ +
Sbjct: 225 HGPFSTSMLPM-LGAPPGTVPNMQMPYQTTLPSPTAAATAGGPLASPT---HYPRRRHFY 280
Query: 102 HPEASAFGRYRHD--KSPNIGSNFR 124
H S F +Y H+ ++P+ G+ R
Sbjct: 281 HQNQSQFQKYMHNSPRNPDTGTGPR 305
>PIF3_ARATH (O80536) Phytochrome-interacting factor 3
(Phytochrome-associated protein 3) (Basic
helix-loop-helix protein 8) (bHLH8) (AtbHLH008)
Length = 524
Score = 36.2 bits (82), Expect = 0.055
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 160 HMISERRRREKLNENFQALRALLPQGTKV 188
H +SERRRR+++NE +AL+ L+P KV
Sbjct: 348 HNLSERRRRDRINEKMRALQELIPNCNKV 376
>PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4 (Basic
helix-loop-helix protein 9) (bHLH9) (AtbHLH009) (Short
under red-light 2)
Length = 430
Score = 35.4 bits (80), Expect = 0.095
Identities = 17/45 (37%), Positives = 28/45 (61%)
Query: 143 RMRDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTK 187
+ R+ + R S H +SERRRR+++NE +AL+ L+P +K
Sbjct: 245 KSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSK 289
>MYC2_CYPCA (Q90342) Myc II protein (C-MYC II)
Length = 401
Score = 34.7 bits (78), Expect = 0.16
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 91 HQHQPQQNYVAHP----EASAFGRYRHDKSPNIGSNFRRQSLMKRSFAFFRSLNLMRMRD 146
H Q NY AHP + A R R + S + S+ RQ ++ +
Sbjct: 260 HVSTHQHNYAAHPSTRHDQPAVKRLRLESSSSNNSSSNRQGKQRKCTS-----------P 308
Query: 147 RNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQ 184
R + + + H + ER+RR +L +F ALR +P+
Sbjct: 309 RTSDSEDNDKRRTHNVLERQRRNELKLSFFALRDEIPE 346
>CBP1_CAEBR (Q6E3D0) Cytoplasmic polyadenylation element binding
protein 1
Length = 585
Score = 33.9 bits (76), Expect = 0.28
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 17 FNIPPGTSPPQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQLPQITPTQLYPTTQIENDV 76
FN P +P +G ++P + + + LQ P + TQ Q
Sbjct: 84 FNYTPQANPYSNLDFQMAMGSGDVPSLMGMPVHKPSMMLQSDPSMDLTQFTEELQ----- 138
Query: 77 IMRAIQNVLSTPPSHQHQPQQNYVAHPEASAFGRYRHDKSPNIGSNFRRQS 127
AIQN+ P S Q ++A EA++ G Y KS + SN R S
Sbjct: 139 ---AIQNMPFQPISSSQAALQAFLAANEAASIGSYGFSKSQMLPSNSMRVS 186
>DRPL_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy
protein)
Length = 1183
Score = 33.5 bits (75), Expect = 0.36
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 20 PPGTSPPQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQLPQITPTQLYP--TTQIENDVI 77
PP T+P S G PP +P + P+ LP P +P T +
Sbjct: 255 PPPTTPIPISSS----GASGAPPAKPPNT---PVGAGNLPSAPPPATFPHVTPNLPPPPA 307
Query: 78 MRAIQNVLSTPPSHQHQPQQNYVAHPEASAFG 109
+R + N ++PP QP ++ P A G
Sbjct: 308 LRPLNNASASPPGMGAQPIPGHLPSPHAMGQG 339
>DRPL_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian
atrophy protein)
Length = 1185
Score = 33.5 bits (75), Expect = 0.36
Identities = 26/101 (25%), Positives = 37/101 (35%), Gaps = 27/101 (26%)
Query: 20 PPGTSP-----------PQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQLPQITPTQLYP 68
PP T+P P P T +GG N+P P +N P +TP P
Sbjct: 254 PPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPAN---------FPHVTPNLPPP 304
Query: 69 TTQIENDVIMRAIQNVLSTPPSHQHQPQQNYVAHPEASAFG 109
+R + N ++PP QP ++ P A G
Sbjct: 305 PA-------LRPLNNASASPPGLGAQPLPGHLPSPHAMGQG 338
>YMH7_CAEEL (P34474) Hypothetical protein F58A4.7 in chromosome III
Length = 431
Score = 32.7 bits (73), Expect = 0.61
Identities = 17/45 (37%), Positives = 27/45 (59%), Gaps = 2/45 (4%)
Query: 163 SERRRREKLNENFQALRALLP--QGTKVRTKLLISSCCFIINALL 205
+ERRR + +N F ALRALLP +G K+ ++ +++ LL
Sbjct: 120 NERRRMQSINAGFLALRALLPRKEGEKLSKAAILQQTADMVHQLL 164
>SMA5_RAT (Q9R1V3) Mothers against decapentaplegic homolog 5 (SMAD
5) (Mothers against DPP homolog 5) (Smad5)
Length = 465
Score = 32.7 bits (73), Expect = 0.61
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 5 STAGSPEYSSLIFNIPPGTSPPQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQLPQITPT 64
S GSP F +P T PP + P Q+G N PM SN ++P Q +P I+
Sbjct: 209 SGPGSP------FQLPADTPPPAYMPPDDQMGQDNSQPM-DTSNNMIP---QIMPSISSR 258
Query: 65 QLYPTTQIE 73
+ P E
Sbjct: 259 DVQPVAYEE 267
>SMA5_HUMAN (Q99717) Mothers against decapentaplegic homolog 5 (SMAD
5) (Mothers against DPP homolog 5) (Smad5) (hSmad5)
(JV5-1)
Length = 465
Score = 32.7 bits (73), Expect = 0.61
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 5 STAGSPEYSSLIFNIPPGTSPPQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQLPQITPT 64
S GSP F +P T PP + P Q+G N PM SN ++P Q +P I+
Sbjct: 209 SGPGSP------FQLPADTPPPAYMPPDDQMGQDNSQPM-DTSNNMIP---QIMPSISSR 258
Query: 65 QLYPTTQIE 73
+ P E
Sbjct: 259 DVQPVAYEE 267
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1
protein)
Length = 1362
Score = 32.7 bits (73), Expect = 0.61
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 29/113 (25%)
Query: 20 PPGTSPPQFSPDLTQLGGVNIPPMR---------------PVSNTLLPLQLQQLPQI-TP 63
P PP SP LTQ + PPM P+++ + L LQQL ++ P
Sbjct: 882 PKPARPPAVSPALTQTPLLPQPPMAQPPQVLLEDEEPPAPPLTSMQMQLYLQQLQKVQPP 941
Query: 64 TQLYPTTQIEND-----------VIMRAIQNVLSTPPSHQHQ--PQQNYVAHP 103
T L P+ ++++ + + +Q PP Q Q PQQ + P
Sbjct: 942 TPLLPSVKVQSQPPPPLPPPPHPSVQQQLQQQPPPPPPPQPQPPPQQQHQPPP 994
>BHB3_RAT (O35779) Class B basic helix-loop-helix protein 3 (bHLHB3)
(Enhancer-of-split and hairy-related protein 1)
(SHARP-1)
Length = 410
Score = 32.7 bits (73), Expect = 0.61
Identities = 20/69 (28%), Positives = 34/69 (48%), Gaps = 3/69 (4%)
Query: 125 RQSLMKRSFAFFRSLNLMRMRDRNQAARPSSN---QLHHMISERRRREKLNENFQALRAL 181
RQ L R F +L + + R + +L H + E++RR+++NE L+ L
Sbjct: 11 RQLLEHRDFIGLDYSSLYMCKPKRSLKRDDTKDTYKLPHRLIEKKRRDRINECIAQLKDL 70
Query: 182 LPQGTKVRT 190
LP+ K+ T
Sbjct: 71 LPEHLKLTT 79
>BHB3_MOUSE (Q99PV5) Class B basic helix-loop-helix protein 3
(bHLHB3) (Differentially expressed in chondrocytes
protein 2) (mDEC2)
Length = 410
Score = 32.7 bits (73), Expect = 0.61
Identities = 20/69 (28%), Positives = 34/69 (48%), Gaps = 3/69 (4%)
Query: 125 RQSLMKRSFAFFRSLNLMRMRDRNQAARPSSN---QLHHMISERRRREKLNENFQALRAL 181
RQ L R F +L + + R + +L H + E++RR+++NE L+ L
Sbjct: 11 RQLLEHRDFIGLDYSSLYMCKPKRSLKRDDTKDTYKLPHRLIEKKRRDRINECIAQLKDL 70
Query: 182 LPQGTKVRT 190
LP+ K+ T
Sbjct: 71 LPEHLKLTT 79
>BHB3_HUMAN (Q9C0J9) Class B basic helix-loop-helix protein 3
(bHLHB3) (Differentially expressed in chondrocytes
protein 2) (hDEC2) (Enhancer-of-split and hairy-related
protein 1) (SHARP-1)
Length = 482
Score = 32.7 bits (73), Expect = 0.61
Identities = 20/69 (28%), Positives = 34/69 (48%), Gaps = 3/69 (4%)
Query: 125 RQSLMKRSFAFFRSLNLMRMRDRNQAARPSSN---QLHHMISERRRREKLNENFQALRAL 181
RQ L R F +L + + R + +L H + E++RR+++NE L+ L
Sbjct: 11 RQLLEHRDFIGLDYSSLYMCKPKRSMKRDDTKDTYKLPHRLIEKKRRDRINECIAQLKDL 70
Query: 182 LPQGTKVRT 190
LP+ K+ T
Sbjct: 71 LPEHLKLTT 79
>MYC_BRARE (P52160) Myc protein (c-myc) (zc-Myc)
Length = 408
Score = 32.3 bits (72), Expect = 0.80
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 91 HQHQPQQNYVAHP----EASAFGRYRHDKSPN--IGSNFRRQSLMKRSFAFFRSLNLMRM 144
H Q NY AHP + A R R + S N I S+ + + +R A
Sbjct: 264 HVSTHQHNYAAHPSTRHDQPAVKRLRLEASNNHSINSSSSNRHVKQRKCA---------- 313
Query: 145 RDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQ 184
R + + + H + ER+RR +L +F ALR +P+
Sbjct: 314 SPRTSDSEDNDKRRTHNVLERQRRNELKLSFFALRDEIPE 353
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,698,250
Number of Sequences: 164201
Number of extensions: 948268
Number of successful extensions: 3144
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 3111
Number of HSP's gapped (non-prelim): 81
length of query: 207
length of database: 59,974,054
effective HSP length: 105
effective length of query: 102
effective length of database: 42,732,949
effective search space: 4358760798
effective search space used: 4358760798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Medicago: description of AC148775.1