BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148762.7 + phase: 2 /partial
(212 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SLAP_CAUCR (P35828) S-layer protein (Paracrystalline surface lay... 34 0.22
Y468_MYCGE (Q49460) Hypothetical protein MG468 33 0.37
YDR6_SCHPO (O13741) Hypothetical RNA-binding protein C16E8.06c i... 33 0.63
PER_DROPS (P12348) Period circadian protein 33 0.63
VIP1_SCHPO (P87216) Protein vip1 32 0.83
AD15_RAT (Q9QYV0) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin... 32 0.83
SYUA_RAT (P37377) Alpha-synuclein 32 1.1
SYUA_MOUSE (O55042) Alpha-synuclein (Non-A beta component of AD ... 32 1.1
YG46_YEAST (P53301) Hypothetical 52.8 kDa protein in BUB1-HIP1 i... 32 1.4
Y468_MYCPN (P75109) Protein MG468 homolog (K05_orf1882) 31 1.8
SYUA_SERCA (Q91448) Alpha-synuclein (Synelfin) 31 1.8
PODX_HUMAN (O00592) Podocalyxin-like protein 1 precursor 31 1.8
YAGX_ECOLI (P77802) Hypothetical protein yagX precursor 31 2.4
SYUA_SAGLB (P61147) Alpha-synuclein 31 2.4
SYUA_PONPA (P61146) Alpha-synuclein 31 2.4
SYUA_PANTR (P61145) Alpha-synuclein 31 2.4
SYUA_PANPA (P61144) Alpha-synuclein 31 2.4
SYUA_HUMAN (P37840) Alpha-synuclein (Non-A beta component of AD ... 31 2.4
SYUA_GORGO (P61140) Alpha-synuclein 31 2.4
SYUA_ERYPA (P61139) Alpha-synuclein 31 2.4
>SLAP_CAUCR (P35828) S-layer protein (Paracrystalline surface layer
protein)
Length = 1025
Score = 34.3 bits (77), Expect = 0.22
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 107 SRSVSSTAANKVAELSNKIGLTETINSGIETFKSVDEKYHVTDITKSAATVTGTTAIVVA 166
S +VS + AN + I +T + + ++ + T +T++ TVTG ++
Sbjct: 400 SGTVSVSVANSSTTTTGAIAVTG--GTAVTVAQTAGNAVNTT-LTQADVTVTGNSSTTAV 456
Query: 167 TVTGRAAMAAGSAIANSSYFAKGALWVSDMLSRAAKST 204
TVT AA AG+ +A GA+ ++D S AA +T
Sbjct: 457 TVTQTAAATAGATVAGR---VNGAVTITD--SAAASAT 489
>Y468_MYCGE (Q49460) Hypothetical protein MG468
Length = 1783
Score = 33.5 bits (75), Expect = 0.37
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 3 DY-ESTAYVTFRDAYALETA-LLLNGSMILDRCISISRWETYTDDSNNWNNLTPNHEDSI 60
DY + YV F ++ E LLN +++L+ I + W +TD NN+ NL N D +
Sbjct: 1507 DYVKPNGYVPFNGVFSKELKPSLLNKALVLNSIIGV--WGNFTDFGNNFQNLVRNKLDKV 1564
Query: 61 TYS 63
S
Sbjct: 1565 ITS 1567
>YDR6_SCHPO (O13741) Hypothetical RNA-binding protein C16E8.06c in
chromosome I
Length = 438
Score = 32.7 bits (73), Expect = 0.63
Identities = 13/29 (44%), Positives = 21/29 (71%)
Query: 8 AYVTFRDAYALETALLLNGSMILDRCISI 36
AY+ FRD+ + +AL LNG+M +DR + +
Sbjct: 229 AYIVFRDSSSARSALSLNGTMFMDRHLRV 257
>PER_DROPS (P12348) Period circadian protein
Length = 1241
Score = 32.7 bits (73), Expect = 0.63
Identities = 25/84 (29%), Positives = 38/84 (44%), Gaps = 6/84 (7%)
Query: 107 SRSVSSTAANKVAELSNKIGLTETINSGIETFKSVDEKYHVTDITKSA------ATVTGT 160
S VSST + + LS G + SG + H++ T ++ TVTGT
Sbjct: 607 SSDVSSTREDARSTLSPLNGFEGSGASGSSGHLTSGSNIHMSSATNTSNAGTGTGTVTGT 666
Query: 161 TAIVVATVTGRAAMAAGSAIANSS 184
I+ + TG A+G+ AN+S
Sbjct: 667 GTIIATSGTGTVTCASGNMDANTS 690
>VIP1_SCHPO (P87216) Protein vip1
Length = 257
Score = 32.3 bits (72), Expect = 0.83
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 35/147 (23%)
Query: 7 TAYVTFRDAYALETALLLNGSMILDRCISISRWE----TYTDDSNNWNNLTPNHEDSITY 62
TA + F A +TALLL +++ I I+ + + TD + ED
Sbjct: 42 TAKIQFERPSATKTALLLQDALLGQNKIQITSEDGGAASTTDQGGAGGDQAARQEDK--- 98
Query: 63 SQMDKFVSSPGEALTMAQQVVKTMVAKGFVLSKDAFVMAKAFDESRSVSSTAANKVAELS 122
P A ++ ++++G+ LS + D+S VSS
Sbjct: 99 ---------PRSA------IISELLSRGYHLSDVTLEKSIQLDQSYGVSSKFK------- 136
Query: 123 NKIGLTETINSGIETFKSVDEKYHVTD 149
G+ E+ SG+ +SV+E+YHVT+
Sbjct: 137 ---GILESALSGV---RSVNERYHVTE 157
>AD15_RAT (Q9QYV0) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin
and metalloproteinase domain 15)
(Metalloproteinase-like, disintegrin-like, and
cysteine-rich protein 15) (MDC-15) (Metalloprotease RGD
disintegrin protein) (Metargidin) (CRII-7)
Length = 816
Score = 32.3 bits (72), Expect = 0.83
Identities = 21/82 (25%), Positives = 41/82 (49%), Gaps = 4/82 (4%)
Query: 108 RSVSSTAANKVAELSNKIGLTETINSGI-ETFK---SVDEKYHVTDITKSAATVTGTTAI 163
R+ S + N+V + S I LTE + +G+ ET + +D + H+ ++ ++ V G +
Sbjct: 39 RTQSRSLENQVVQDSPPINLTEVLQTGLPETLRIGLELDGENHILELQQNRDLVPGRPTL 98
Query: 164 VVATVTGRAAMAAGSAIANSSY 185
V G ++ G ++ N Y
Sbjct: 99 VWYQPDGTRMVSEGHSLENCCY 120
>SYUA_RAT (P37377) Alpha-synuclein
Length = 140
Score = 32.0 bits (71), Expect = 1.1
Identities = 27/101 (26%), Positives = 42/101 (40%), Gaps = 3/101 (2%)
Query: 89 KGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIETFKSVDEKYHVT 148
KG +K+ V A ++++ + AA K E +G ++T + +V EK
Sbjct: 6 KGLSKAKEGVVAAA--EKTKQGVAEAAGKTKEGVLYVG-SKTKEGVVHGVTTVAEKTKEQ 62
Query: 149 DITKSAATVTGTTAIVVATVTGRAAMAAGSAIANSSYFAKG 189
A VTG TA+ TV G +AA + KG
Sbjct: 63 VTNVGGAVVTGVTAVAQKTVEGAGNIAAATGFVKKDQMGKG 103
>SYUA_MOUSE (O55042) Alpha-synuclein (Non-A beta component of AD
amyloid) (Non-A4 component of amyloid precursor) (NACP)
Length = 140
Score = 32.0 bits (71), Expect = 1.1
Identities = 27/101 (26%), Positives = 42/101 (40%), Gaps = 3/101 (2%)
Query: 89 KGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIETFKSVDEKYHVT 148
KG +K+ V A ++++ + AA K E +G ++T + +V EK
Sbjct: 6 KGLSKAKEGVVAAA--EKTKQGVAEAAGKTKEGVLYVG-SKTKEGVVHGVTTVAEKTKEQ 62
Query: 149 DITKSAATVTGTTAIVVATVTGRAAMAAGSAIANSSYFAKG 189
A VTG TA+ TV G +AA + KG
Sbjct: 63 VTNVGGAVVTGVTAVAQKTVEGAGNIAAATGFVKKDQMGKG 103
>YG46_YEAST (P53301) Hypothetical 52.8 kDa protein in BUB1-HIP1
intergenic region
Length = 507
Score = 31.6 bits (70), Expect = 1.4
Identities = 31/137 (22%), Positives = 59/137 (42%), Gaps = 5/137 (3%)
Query: 46 SNNWNNLTPNHEDSITYSQMDKFVSSPGEALTMAQQVVKTMVAKGFVLSKDAFVMAKAFD 105
S++ ++ T + S T S S + T++ V T+ + V S +
Sbjct: 304 SSSTSSSTVSSSASSTVSSSVSSTVSSSASSTVSSSVSSTVSSSSSVSSSSS---TSPSS 360
Query: 106 ESRSVSSTAANKVAELSNKIGLTE--TINSGIETFKSVDEKYHVTDITKSAATVTGTTAI 163
+ + S T A+ S+ I E + +S +T S + TK+ ATV+ TT
Sbjct: 361 STATSSKTLASSSVTTSSSISSFEKQSSSSSKKTVASSSTSESIISSTKTPATVSSTTRS 420
Query: 164 VVATVTGRAAMAAGSAI 180
VA T ++++++ S +
Sbjct: 421 TVAPTTQQSSVSSDSPV 437
>Y468_MYCPN (P75109) Protein MG468 homolog (K05_orf1882)
Length = 1882
Score = 31.2 bits (69), Expect = 1.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 7 TAYVTFRDAYALE-TALLLNGSMILDRCISISRWETYTDDSNNWNNLTPNHEDSITYS 63
T YV F ++ E L++ +++L+ I + W +TD NN+ NL E+ I S
Sbjct: 1611 TGYVPFNGVFSKELNPSLVSKALVLNSNIGV--WGNFTDFGNNFTNLVKGKENKIITS 1666
>SYUA_SERCA (Q91448) Alpha-synuclein (Synelfin)
Length = 143
Score = 31.2 bits (69), Expect = 1.8
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 89 KGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIETFKSVDEKYHVT 148
KG +K+ V A ++++ + AA K E +G + T + +V EK
Sbjct: 6 KGLSKAKEGVVAAA--EKTKQGVAEAAGKTKEGVLYVG-SRTKEGVVHGVTTVAEKTKEQ 62
Query: 149 DITKSAATVTGTTAIVVATVTGRAAMAAGSAIANSSYFAK 188
A VTG TA+ TV G +AA + + AK
Sbjct: 63 VSNVGGAVVTGVTAVAQKTVEGAGNIAAATGLVKKDQLAK 102
>PODX_HUMAN (O00592) Podocalyxin-like protein 1 precursor
Length = 528
Score = 31.2 bits (69), Expect = 1.8
Identities = 31/93 (33%), Positives = 44/93 (46%), Gaps = 14/93 (15%)
Query: 71 SPGEALTMAQQV---VKTMVAKGFVLSKDAFVM-----AKAFDESRSVSSTAANKVAELS 122
SPG T+AQQV V T VA+G + K+ D + +STA K S
Sbjct: 91 SPGTT-TLAQQVSGPVNTTVARGGGSGNPTTTIESPKSTKSADTTTVATSTATAKPNTTS 149
Query: 123 NKIGLTETINSGIETFKSVDEKYHVTDITKSAA 155
++ G +T NSG ++ SV TD+T + A
Sbjct: 150 SQNGAEDTTNSGGKSSHSV-----TTDLTSTKA 177
>YAGX_ECOLI (P77802) Hypothetical protein yagX precursor
Length = 841
Score = 30.8 bits (68), Expect = 2.4
Identities = 36/172 (20%), Positives = 63/172 (35%), Gaps = 39/172 (22%)
Query: 34 ISISRWETYTDDSNNWNNLTPNHEDSITYSQMDKFVSSPGEALTMAQQVVKTMVAKGFVL 93
+ +S + Y + N N +++ I + + PG + +V + + G +
Sbjct: 698 LPLSPYGRYEVELQNSKNSLDSYD--IVSGRKSRLTLYPGNVAVIEPEVKQMVTVSGRIR 755
Query: 94 SKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIETFKSVDEKYHVTDITKS 153
++D ++A A ++N IG T T +G E VD+KY D S
Sbjct: 756 AEDGTLLANA----------------RINNHIGRTRTDENG-EFVMDVDKKYPTIDFRYS 798
Query: 154 AATVTGTTAIVVATVTGRAAMAAGSAIANSSYFAKGALWVSDMLSRAAKSTA 205
G VA +A +GA+WV D++ S A
Sbjct: 799 -----GNKTCEVALELNQA---------------RGAVWVGDVVCSGLSSWA 830
>SYUA_SAGLB (P61147) Alpha-synuclein
Length = 140
Score = 30.8 bits (68), Expect = 2.4
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 89 KGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIETFKSVDEKYHVT 148
KG +K+ V A ++++ + AA K E +G ++T + +V EK
Sbjct: 6 KGLSKAKEGVVAAA--EKTKQGVAEAAGKTKEGVLYVG-SKTKEGVVHGVTTVAEKTKEQ 62
Query: 149 DITKSAATVTGTTAIVVATVTGRAAMAAGSAIANSSYFAK 188
A VTG TA+ TV G +AA + + K
Sbjct: 63 VTNVGGAVVTGVTAVAQKTVEGAGNIAAATGFVRKDHLGK 102
>SYUA_PONPA (P61146) Alpha-synuclein
Length = 140
Score = 30.8 bits (68), Expect = 2.4
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 89 KGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIETFKSVDEKYHVT 148
KG +K+ V A ++++ + AA K E +G ++T + +V EK
Sbjct: 6 KGLSKAKEGVVAAA--EKTKQGVAEAAGKTKEGVLYVG-SKTKEGVVHGVATVAEKTKEQ 62
Query: 149 DITKSAATVTGTTAIVVATVTGRAAMAAGSAIANSSYFAK 188
A VTG TA+ TV G ++AA + K
Sbjct: 63 VTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK 102
>SYUA_PANTR (P61145) Alpha-synuclein
Length = 140
Score = 30.8 bits (68), Expect = 2.4
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 89 KGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIETFKSVDEKYHVT 148
KG +K+ V A ++++ + AA K E +G ++T + +V EK
Sbjct: 6 KGLSKAKEGVVAAA--EKTKQGVAEAAGKTKEGVLYVG-SKTKEGVVHGVATVAEKTKEQ 62
Query: 149 DITKSAATVTGTTAIVVATVTGRAAMAAGSAIANSSYFAK 188
A VTG TA+ TV G ++AA + K
Sbjct: 63 VTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK 102
>SYUA_PANPA (P61144) Alpha-synuclein
Length = 140
Score = 30.8 bits (68), Expect = 2.4
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 89 KGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIETFKSVDEKYHVT 148
KG +K+ V A ++++ + AA K E +G ++T + +V EK
Sbjct: 6 KGLSKAKEGVVAAA--EKTKQGVAEAAGKTKEGVLYVG-SKTKEGVVHGVATVAEKTKEQ 62
Query: 149 DITKSAATVTGTTAIVVATVTGRAAMAAGSAIANSSYFAK 188
A VTG TA+ TV G ++AA + K
Sbjct: 63 VTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK 102
>SYUA_HUMAN (P37840) Alpha-synuclein (Non-A beta component of AD
amyloid) (Non-A4 component of amyloid precursor) (NACP)
Length = 140
Score = 30.8 bits (68), Expect = 2.4
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 89 KGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIETFKSVDEKYHVT 148
KG +K+ V A ++++ + AA K E +G ++T + +V EK
Sbjct: 6 KGLSKAKEGVVAAA--EKTKQGVAEAAGKTKEGVLYVG-SKTKEGVVHGVATVAEKTKEQ 62
Query: 149 DITKSAATVTGTTAIVVATVTGRAAMAAGSAIANSSYFAK 188
A VTG TA+ TV G ++AA + K
Sbjct: 63 VTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK 102
>SYUA_GORGO (P61140) Alpha-synuclein
Length = 140
Score = 30.8 bits (68), Expect = 2.4
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 89 KGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIETFKSVDEKYHVT 148
KG +K+ V A ++++ + AA K E +G ++T + +V EK
Sbjct: 6 KGLSKAKEGVVAAA--EKTKQGVAEAAGKTKEGVLYVG-SKTKEGVVHGVATVAEKTKEQ 62
Query: 149 DITKSAATVTGTTAIVVATVTGRAAMAAGSAIANSSYFAK 188
A VTG TA+ TV G ++AA + K
Sbjct: 63 VTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK 102
>SYUA_ERYPA (P61139) Alpha-synuclein
Length = 140
Score = 30.8 bits (68), Expect = 2.4
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 89 KGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGIETFKSVDEKYHVT 148
KG +K+ V A ++++ + AA K E +G ++T + +V EK
Sbjct: 6 KGLSKAKEGVVAAA--EKTKQGVAEAAGKTKEGVLYVG-SKTKEGVVHGVATVAEKTKEQ 62
Query: 149 DITKSAATVTGTTAIVVATVTGRAAMAAGSAIANSSYFAK 188
A VTG TA+ TV G ++AA + K
Sbjct: 63 VTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK 102
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.312 0.122 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,180,684
Number of Sequences: 164201
Number of extensions: 667536
Number of successful extensions: 1822
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1810
Number of HSP's gapped (non-prelim): 43
length of query: 212
length of database: 59,974,054
effective HSP length: 106
effective length of query: 106
effective length of database: 42,568,748
effective search space: 4512287288
effective search space used: 4512287288
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Medicago: description of AC148762.7