BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148755.5 + phase: 0 
         (569 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310...    88  7e-17
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog               47  1e-04
YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ...    37  0.18
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog               35  0.53
ENV_HV1S3 (P19549) Envelope polyprotein GP160 precursor [Contain...    33  2.0
RS6_CAMJE (Q9ZAH3) 30S ribosomal protein S6                            32  3.4
TYRO_ASPOR (Q00234) Tyrosinase (EC 1.14.18.1) (Monophenol monoox...    31  7.6
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains...    31  9.9
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type...    31  9.9

>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
           (ORF154)
          Length = 154

 Score = 87.8 bits (216), Expect = 7e-17
 Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 14/155 (9%)

Query: 146 SLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPM-SQGGLGVRK 204
           +LPVY +S F+    +   + S   + +W  CE  RKI+WV W  +C      GGLG R 
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 205 LGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVK-EGGRHSSRWWRMICNVRD- 262
           LG FN +LL K  +R++   + L  R+L++RY     M++   G   S  WR I + R+ 
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121

Query: 263 -GRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGD 296
             RGLL          R +G+G +T  W D W+ D
Sbjct: 122 LSRGLL----------RTIGDGIHTKVWLDRWIMD 146


>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
          Length = 1259

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 46/202 (22%), Positives = 84/202 (40%), Gaps = 11/202 (5%)

Query: 21  EVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLS 80
           EV+LS   FADD ++  E   ++ + +  ++    KVSG K+N  KS       +    S
Sbjct: 693 EVKLS--LFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQTES 750

Query: 81  EAAAVLNCKTGLIPFMYLGLPIGGDERKLC--FWKPVLDRISARLSSWNNKYLSSGGRLI 138
           +  + L          YLG+ +  D + L    +KP+L+ I    + W N   S  GR+ 
Sbjct: 751 QIMSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWVGRIN 810

Query: 139 LLKSVLSSLPVYFLSF--FKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMS 196
           ++K  +    +Y  +    K P    + +E    K  W     ++K A +   ++     
Sbjct: 811 IVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIW-----NQKRAHIAKSTLSQKNK 865

Query: 197 QGGLGVRKLGEFNLSLLGKWCW 218
            GG+ +     +  + + K  W
Sbjct: 866 AGGITLPDFKLYYKATVTKTAW 887


>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein
           (ORF 2)
          Length = 1308

 Score = 36.6 bits (83), Expect = 0.18
 Identities = 47/231 (20%), Positives = 100/231 (42%), Gaps = 22/231 (9%)

Query: 21  EVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKS--MVTGVNISTSW 78
           ++R+    +ADD +++ +   +++   +    +    S  ++N++KS  ++ G ++   +
Sbjct: 686 DMRVVLSAYADDVILVAQ-DLVDLERAQECQEVYAAASSARINWSKSSGLLEG-SLKVDF 743

Query: 79  LSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDR-ISARLSSWNN--KYLSSGG 135
           L  A   ++ ++ +I   YLG+ +  +E  +      L+  +  RL  W    K LS  G
Sbjct: 744 LPPAFRDISWESKIIK--YLGVYLSAEEYPVSQNFIELEECVLTRLGKWKGFAKVLSMRG 801

Query: 136 RLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPM 195
           R +++  +++S   Y L         I+ I+       W G        WV      LP+
Sbjct: 802 RALVINQLVASQIWYRLICLSPTQEFIAKIQRRLLDFLWIGKH------WVSAGVSSLPL 855

Query: 196 SQGGLGV----RKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGM 242
            +GG GV     ++  F L  + ++   L  D +  W  +  + Y ++  M
Sbjct: 856 KEGGQGVVCIRSQVHTFRLQQIQRY---LYADPSPQWCTLASSFYRQVRNM 903


>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
          Length = 1260

 Score = 35.0 bits (79), Expect = 0.53
 Identities = 41/165 (24%), Positives = 73/165 (43%), Gaps = 20/165 (12%)

Query: 21  EVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMV---TGVNISTS 77
           E++LS   FADD ++  E +  +   +  V+     VSG K+N +KS+    T  N +  
Sbjct: 693 EIKLS--LFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEK 750

Query: 78  WLSEAAAVLNCKTGLIP--FMYLGLPIGGDERKLC--FWKPVLDRISARLSSWNNKYLSS 133
            + ++         ++P    YLG+ +  D + L    ++ +   I+  ++ W N   S 
Sbjct: 751 TVKDSIPFT-----VVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSW 805

Query: 134 GGRLILLKSVLSSLPVYFLSF----FKAPTGIISSIESIFKKKFW 174
            GR+ ++K  +S LP    +F     KAP      +E I     W
Sbjct: 806 LGRINIVK--MSILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIW 848


>ENV_HV1S3 (P19549) Envelope polyprotein GP160 precursor [Contains:
           Exterior membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 852

 Score = 33.1 bits (74), Expect = 2.0
 Identities = 52/207 (25%), Positives = 78/207 (37%), Gaps = 41/207 (19%)

Query: 178 EVSRKIAWVKWD-------SVCLPMSQGGLGVRKLGEFNLSLLGKWC--WRLLVDKNGLW 228
           ++   + W++W+       S+   + +     ++  E  L  L KW   W      N LW
Sbjct: 617 KIWNNMTWMEWEREIDNYTSLIYTLLEESQNQQEKNEQELLELDKWASLWNWFSITNWLW 676

Query: 229 YRVLKARYGEIGGMVKEGGRHSSRWWRMICNVRDGRGLLV-------------------- 268
           Y  ++     +GG++  G R       ++  VR G   L                     
Sbjct: 677 Y--IRIFIMIVGGLI--GLRIIFAVLSIVNRVRQGYSPLSFQTLIPAQRGPDRPEGIEEG 732

Query: 269 -GKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAVNKECSVEDMVRAGWEE 327
            G+   D   R+V NG    FW D  L  + L F + RL DL +     VE + R GWE 
Sbjct: 733 GGERDRDRSTRLV-NGFLALFWDD--LRSLCL-FSYHRLTDLLLIVARIVELLGRRGWEV 788

Query: 328 GGGGWVWRRRLLAWEEEGVRECVNLLN 354
                 W   LL W +E     V+LLN
Sbjct: 789 LK---YWWNLLLYWSQELKNSAVSLLN 812


>RS6_CAMJE (Q9ZAH3) 30S ribosomal protein S6
          Length = 125

 Score = 32.3 bits (72), Expect = 3.4
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 108 KLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIES 167
           KL F K VL + SA + +     +  G R +  K        YF+ +FKAPT +I+ +E 
Sbjct: 22  KLEFVKEVLTKNSAEIET----VVPMGTRKLAYKIKKYERGTYFVIYFKAPTNLIAELER 77

Query: 168 IFK 170
           + +
Sbjct: 78  VLR 80


>TYRO_ASPOR (Q00234) Tyrosinase (EC 1.14.18.1) (Monophenol
           monooxygenase)
          Length = 539

 Score = 31.2 bits (69), Expect = 7.6
 Identities = 17/61 (27%), Positives = 31/61 (49%), Gaps = 3/61 (4%)

Query: 342 EEEGVRECVNLLNNIVLQDNIQDKWRWLLDPILGYTVKGTYCFLTNMEGQVTSGVGFDVW 401
           E +  R+ +  LN   L D + + WRW+ DP    T + ++ +L  + G+   G G++  
Sbjct: 19  ETKAERKSIRDLNEEEL-DKLIEAWRWIQDP--ARTGEDSFFYLAGLHGEPFRGAGYNNS 75

Query: 402 H 402
           H
Sbjct: 76  H 76


>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1300

 Score = 30.8 bits (68), Expect = 9.9
 Identities = 36/158 (22%), Positives = 62/158 (38%), Gaps = 6/158 (3%)

Query: 21  EVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLS 80
           EV++S L  ADD ++       + R +  ++    +V G K+N NKSM      +     
Sbjct: 720 EVKISLL--ADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKSMAFLYTKNKQAEK 777

Query: 81  EAAAVLNCKTGLIPFMYLGLPIGGDERKLC--FWKPVLDRISARLSSWNNKYLSSGGRLI 138
           E               YLG+ +  + + L    +K +   I   L  W +   S  GR+ 
Sbjct: 778 EIRETTPFSIVTNNIKYLGVTLTKEVKDLYDKNFKSLKKEIKEDLRRWKDLPCSWIGRIN 837

Query: 139 LLKSVLSSLPVYFLSF--FKAPTGIISSIESIFKKKFW 174
           ++K  +    +Y  +    K PT   + +E    K  W
Sbjct: 838 IVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVW 875


>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 1025

 Score = 30.8 bits (68), Expect = 9.9
 Identities = 24/87 (27%), Positives = 41/87 (46%), Gaps = 16/87 (18%)

Query: 379 KGTYCFLTNMEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQAADN 438
           + +Y ++ ++   + + V     H R+ +  +L   R+ + R   RTN          + 
Sbjct: 799 EASYSWIRDIHVAIPASVWIKYHHTRINALPTLM--RMSRGR---RTN---------GNA 844

Query: 439 FCVGGCGIPETVDHLFIQC--TSFGRV 463
            C  GCG+PET+ H+  QC  T  GRV
Sbjct: 845 LCRAGCGLPETLYHVVQQCPRTHGGRV 871


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.326    0.142    0.483 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,875,818
Number of Sequences: 164201
Number of extensions: 3146825
Number of successful extensions: 7621
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7611
Number of HSP's gapped (non-prelim): 16
length of query: 569
length of database: 59,974,054
effective HSP length: 116
effective length of query: 453
effective length of database: 40,926,738
effective search space: 18539812314
effective search space used: 18539812314
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 68 (30.8 bits)