BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148528.7 - phase: 0 /pseudo
(1391 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1, m... 77 3e-13
YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergeni... 74 2e-12
PIF1_YEAST (P07271) DNA repair and recombination protein PIF1, m... 51 2e-05
DDA_BPT4 (P32270) DNA helicase 41 0.020
YBE7_YEAST (P34216) Hypothetical 150.8 kDa protein in SEC17-QCR1... 39 0.099
PRIA_BACSU (P94461) Primosomal protein N' (Replication factor Y) 37 0.38
HELI_EHV1B (P28934) Probable helicase 37 0.38
TEX_BORPE (Q45388) TEX protein 36 0.84
SOX5_MOUSE (P35710) Transcription factor SOX-5 36 0.84
ARS2_AQUAE (O66674) Putative arsenical pump-driving ATPase 2 (EC... 35 1.9
FTSY_BUCAP (Q8KA77) Cell division protein ftsY homolog 34 2.4
SOX5_HUMAN (P35711) Transcription factor SOX-5 34 3.2
MYHD_HUMAN (Q9UKX3) Myosin heavy chain, skeletal muscle, extraoc... 34 3.2
FTSY_MYCLE (O33010) Cell division protein ftsY homolog 34 3.2
EX5A_ECOLI (P04993) Exodeoxyribonuclease V alpha chain (EC 3.1.1... 33 4.2
EX5A_BUCBP (Q89AB2) Exodeoxyribonuclease V alpha chain (EC 3.1.1... 33 4.2
EX5A_BUCAI (P57530) Exodeoxyribonuclease V alpha chain (EC 3.1.1... 33 4.2
NBP2_MOUSE (Q9R061) Nucleotide binding protein 2 (NBP 2) 33 5.4
YF33_METJA (Q58928) Hypothetical protein MJ1533 33 7.1
HELI_ICHV1 (Q00092) Probable helicase 33 7.1
>PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1,
mitochondrial precursor
Length = 805
Score = 77.4 bits (189), Expect = 3e-13
Identities = 131/558 (23%), Positives = 221/558 (39%), Gaps = 99/558 (17%)
Query: 854 TLIEKHMEKNRRSLKEFKGFPYPTDYVMEELGNRLIYDELNYDEDALKLEFKRLFSTVTD 913
+L +K M K++ + + K F P + I L D+ K +F ++D
Sbjct: 259 SLAKKRMSKSKSTPQISKKFSVP----LNSASKSPIGSSLFKTSDSRKKSVPSIF--LSD 312
Query: 914 EQRDIYHKIMSAVNGQNGGVFFLHGYGGTGKTFMWT----TLAASLRSQGKIVLTVATSG 969
EQ+ +I+ V Q +FF G GTGK+ + L + R Q V A++G
Sbjct: 313 EQK----RILDMVVEQQHSIFFT-GSAGTGKSVLLRKIIEVLKSKYRKQSDRVAVTASTG 367
Query: 970 IASLLLPGGRTAHSKFKIPVP--SFENSTCNIDGDSDLAKLLKVTNLIIWDEAPMAHKFC 1027
+A+ + GG T HS + + S + I + T ++I DE M
Sbjct: 368 LAACNI-GGVTLHSFAGVGLARESVDLLVSKIKKNKKCVNRWLRTRVLIIDEVSMVDAEL 426
Query: 1028 FEALDRTLKDIMSDTADGDKIFGGKVIVFGGDFRQILPVVPRADRSDIINSSINSSYIWD 1087
+ L+ + I D+ K FGG +V GDF Q+ PV S S W
Sbjct: 427 MDKLEEVARVIRKDS----KPFGGIQLVLTGDFFQLPPVPENGKESKF----CFESQTWK 478
Query: 1088 ECIVLTLTKNMRLRFNVGSSDADELKTFSEWILKVGEGKISEPN-------DGIVDFEIP 1140
+ T+ R D + +K +E L GK+S+ + + +++E
Sbjct: 479 SALDFTIGLTHVFR----QKDEEFVKMLNELRL----GKLSDESVRKFKVLNRTIEYE-- 528
Query: 1141 DDLLIKEFDDPIEAIMKSTYPNFLNMYNNP-----------------DYLQQRAILAST- 1182
D LL E + +S + NP D L Q + +T
Sbjct: 529 DGLLPTELFPTRYEVERSNDMRMQQINQNPVTFTAIDSGTVRDKEFRDRLLQGCMAPATL 588
Query: 1183 -------IDVVDKINDYVLSIIPGEEKEYFSSDSIDRSEVNDQCQSFQLFTPEFLSTLRT 1235
+ ++ I+D +++ G+ + ++ + + + Q F + L +
Sbjct: 589 VLKVNAQVMLIKNIDDQLVNGSLGKVIGFIDDETYQMEKKDAEMQGRNAFEYDSLD-ISP 647
Query: 1236 SGLPNHK------IKLKVGTPIMLLRNLDQVEGLCNGTRLIVTRMANHVIEAKIISGKNV 1289
LP+ K I ++ + + L + + G R IV + IE
Sbjct: 648 FDLPDVKQKKYKLIAMRKASSTAIKWPLVRFKLPNGGERTIVVQRETWNIE--------- 698
Query: 1290 GNLTYIPRMSMSPSQSPWPFKLIRRQFPIIVSYAMTINKSQGQTLDSVGLYLPRSVFSHG 1349
+P + S+S Q P+I++YA++I+K+QGQTLD V + L R VF G
Sbjct: 699 -----LPNGEVQASRS---------QIPLILAYAISIHKAQGQTLDRVKVDLGR-VFEKG 743
Query: 1350 QLYVAFSRVRTKAGLKIL 1367
Q YVA SR T+ GL++L
Sbjct: 744 QAYVALSRATTQEGLQVL 761
>YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergenic
region
Length = 723
Score = 74.3 bits (181), Expect = 2e-12
Identities = 119/494 (24%), Positives = 208/494 (42%), Gaps = 66/494 (13%)
Query: 935 FLHGYGGTGKTFMWTTLAASLRS-QGKIVLTV-ATSGIASLLLPGGRTAH--SKFKIPVP 990
F G GTGK+ + T+ L S GK + + A++G+A++ + GG T H S I
Sbjct: 251 FYTGSAGTGKSVILQTIIRQLSSLYGKESIAITASTGLAAVTI-GGSTLHKWSGIGIGNK 309
Query: 991 SFENSTCNIDGDSDLAKLLKVTNLIIWDEAPMAHKFCFEALDRTLKDIMSDTADGDKIFG 1050
+ + I DL + T ++I DE M + L++ + I + D FG
Sbjct: 310 TIDQLVKKIQSQKDLLAAWRYTKVLIIDEISMVDGNLLDKLEQIARRIRKN----DDPFG 365
Query: 1051 GKVIVFGGDFRQILPVVPRADRSDIINSSINSSYIWDECI--VLTLTKNMRLRFNVGSSD 1108
G +V GDF Q LP V + D +++ S +W CI + LTK R + N
Sbjct: 366 GIQLVLTGDFFQ-LPPVAKKDEHNVVKFCFESE-MWKRCIQKTILLTKVFRQQDN---KL 420
Query: 1109 ADELKTFSEWILKVGEGKISEPNDGIVDFE---IPDDLLIKEFDDPIEAIMK-STYPNFL 1164
D L L V K + +D+ P +L + + + K + P L
Sbjct: 421 IDILNAIRYGELTVDIAKTIRNLNRDIDYADGIAPTELYATRREVELSNVKKLQSLPGDL 480
Query: 1165 NMYNNPDYLQQR--AILASTIDVVDKI----NDYVLSIIPGEEKEYFSSDSIDR------ 1212
+ D +R AIL S++ +V+K+ D + ++ + + S+ +
Sbjct: 481 YEFKAVDNAPERYQAILDSSL-MVEKVVALKEDAQVMMLKNKPDVELVNGSLGKVLFFVT 539
Query: 1213 -SEVNDQCQSFQLFTPEFLSTLRTSGLPNHKIKLKVGTPIML-------------LRNLD 1258
S V + +++ E + +R + +G P++ L L+
Sbjct: 540 ESLVVKMKEIYKIVDDEVVMDMRL-------VSRVIGNPLLKESKEFRQDLNARPLARLE 592
Query: 1259 QVEGLCNGTRLIVTRMANHVIEAKIISGKNVGNLTYIPRMSMSPSQSPWPFK-----LIR 1313
+++ L N +++ H + + VG YI + M P + P L R
Sbjct: 593 RLKILIN----YAVKISPHKEKFPYVRW-TVGKNKYIHEL-MVPERFPIDIPRENVGLER 646
Query: 1314 RQFPIIVSYAMTINKSQGQTLDSVGLYLPRSVFSHGQLYVAFSRVRTKAGLKILIHDLEK 1373
Q P+++ +A++I+K+QGQT+ + + L R +F GQ+YVA SR T L++L D K
Sbjct: 647 TQIPLMLCWALSIHKAQGQTIQRLKVDL-RRIFEAGQVYVALSRAVTMDTLQVLNFDPGK 705
Query: 1374 KPLSNTTNVVYKEV 1387
+ YK +
Sbjct: 706 IRTNERVKDFYKRL 719
>PIF1_YEAST (P07271) DNA repair and recombination protein PIF1,
mitochondrial precursor
Length = 857
Score = 51.2 bits (121), Expect = 2e-05
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 1313 RRQFPIIVSYAMTINKSQGQTLDSVGLYLPRSVFSHGQLYVAFSRVRTKAGLKILIHD 1370
R Q P++++++++I+KSQGQTL V + L R VF GQ YVA SR ++ GL++L D
Sbjct: 691 RVQLPLMLAWSLSIHKSQGQTLPKVKVDL-RRVFEKGQAYVALSRAVSREGLQVLNFD 747
Score = 45.8 bits (107), Expect = 8e-04
Identities = 83/348 (23%), Positives = 136/348 (38%), Gaps = 70/348 (20%)
Query: 929 QNGGVFFLHGYGGTGKTFMWTTLAASLRS--QGKIVLTVATSGIASLLLPGGRTAHSKFK 986
+NG F G GTGK+ + + L+ + V A++G+A+ + GG T HS
Sbjct: 249 ENGHNIFYTGSAGTGKSILLREMIKVLKGIYGRENVAVTASTGLAACNI-GGITIHSFAG 307
Query: 987 IPVPSFENSTCNIDGDSDLAKLLKVTNL--IIWDEAPMAHKFCFEALDRTLKDIMSDTAD 1044
I + G L + N+ ++ DE M + LD + I +
Sbjct: 308 ILGKGDADKLYKKVGRRSRKHLRRWENIGALVVDEISMLDAELLDKLDFIARKIRKN--- 364
Query: 1045 GDKIFGGKVIVFGGDFRQILPVVPRADRSDIINSSINSSYIWDECIVLT--LTKNMRLRF 1102
+ FGG ++F GDF Q+ PV +R S W E + +T L K R R
Sbjct: 365 -HQPFGGIQLIFCGDFFQLPPVSKDPNRP---TKFAFESKAWKEGVKMTIMLQKVFRQRG 420
Query: 1103 NVGSSDADELKTFSEWILKVGEGKISEPND---GIVDFEIPDDLLIKEFDDPIEAIMKST 1159
+V F E + ++ G I + + + +PDD +I
Sbjct: 421 DV---------KFIEMLNRMRLGNIDDETEREFKKLSRPLPDDEIIP------------- 458
Query: 1160 YPNFLNMYNNPDYLQQRAILASTIDVVDKINDYVLSIIPGEEKEYFSSDSIDRSEVNDQC 1219
A L ST V++ N+ LS +PG+ + ++ID + D+
Sbjct: 459 -----------------AELYSTRMEVERANNSRLSKLPGQVHIF---NAIDGGALEDE- 497
Query: 1220 QSFQLFTPEFLSTLRTSGLPNHKIKLKVGTPIMLLRNLDQVEGLCNGT 1267
E L + L ++ LKVG +M+++NLD L NG+
Sbjct: 498 --------ELKERLLQNFLAPKELHLKVGAQVMMVKNLDAT--LVNGS 535
>DDA_BPT4 (P32270) DNA helicase
Length = 439
Score = 41.2 bits (95), Expect = 0.020
Identities = 83/345 (24%), Positives = 139/345 (40%), Gaps = 45/345 (13%)
Query: 908 FSTVTDEQRDIYHKIMSAVNGQNGGVFFLHGYGGTGKTFMWTTLAASLRSQG--KIVLTV 965
F +T+ Q++ ++ +M A+ + V ++G GTGKT + + +L S G I+L
Sbjct: 3 FDDLTEGQKNAFNIVMKAIKEKKHHVT-INGPAGTGKTTLTKFIIEALISTGGTGIILAA 61
Query: 966 ATSGIASLL--LPG--GRTAHSKFKI-PVPSFENSTCNIDGDSDLAKLLKVTNLIIWDEA 1020
T +L L G T HS KI PV EN DLAK ++I DE
Sbjct: 62 PTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAK----CRVLICDEV 117
Query: 1021 PMAHKFCFEALDRTLKDIMSDTADGDKIFGGKVIVFGGDFRQILPVVPRADRSDIINSSI 1080
M + F+ L T+ + I+ GD +QI PV P + + I
Sbjct: 118 SMYDRKLFKILLSTIPPWCT-------------IIGIGDNKQIRPVEPGENTAYISPFFT 164
Query: 1081 NSSYIWDECIVLTLTKNMRLRFNVGSSDADELKTFSEWILKVGEGKISEPND-GIVDFEI 1139
+ + E LT K ++D K + ++ G G D + DF +
Sbjct: 165 HKDFYQCE---LTEVKRSNAPIIDVATDVRNGKWNYDKVVD-GHGVRGFTGDTALRDFMV 220
Query: 1140 PDDLLIKEFDDPIEAIMKSTYPNFLNMYNNPDYLQQRAILASTIDVVDKINDYVLSIIPG 1199
++K DD E N + + N + +I+ I DK D+++ I
Sbjct: 221 NYFSIVKSLDDLFE--------NRVMAFTNKSVDKLNSIIRKKIFETDK--DFIVGEIIV 270
Query: 1200 EEKEYFSSDSIDRSEVND----QCQSFQLFTPEFLST-LRTSGLP 1239
++ F + ID V++ Q ++ E+ ST ++ G+P
Sbjct: 271 MQEPLFKTYKIDGKPVSEIIFNNGQLVRIIEAEYTSTFVKARGVP 315
>YBE7_YEAST (P34216) Hypothetical 150.8 kDa protein in SEC17-QCR1
intergenic region
Length = 1381
Score = 38.9 bits (89), Expect = 0.099
Identities = 22/54 (40%), Positives = 31/54 (56%), Gaps = 1/54 (1%)
Query: 117 DTDNELQNRVQGIRNP-NLNMQTVSKLQQMLDDTNCHAKSFRKARDRLRQGNVE 169
D + +L+ R + I NL Q VSKLQ+M DD + SF KA L++ N+E
Sbjct: 814 DREKQLEERNRQIEEQENLYHQHVSKLQEMFDDLSQRKASFEKADQELKERNIE 867
>PRIA_BACSU (P94461) Primosomal protein N' (Replication factor Y)
Length = 805
Score = 37.0 bits (84), Expect = 0.38
Identities = 22/71 (30%), Positives = 35/71 (48%)
Query: 890 YDELNYDEDALKLEFKRLFSTVTDEQRDIYHKIMSAVNGQNGGVFFLHGYGGTGKTFMWT 949
Y+E+ D K+ K +TDEQR + I ++ VF LHG G+GKT ++
Sbjct: 247 YEEVYRDPYQDKMFKKTEPLPLTDEQRAAFEPIRETLDSDEHKVFLLHGVTGSGKTEIYL 306
Query: 950 TLAASLRSQGK 960
+ ++GK
Sbjct: 307 QSIEKVLAKGK 317
>HELI_EHV1B (P28934) Probable helicase
Length = 881
Score = 37.0 bits (84), Expect = 0.38
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 1323 AMTINKSQGQTLDSVGLYLPRSVFSHGQLYVAFSRVRTKAGLKILIHDLEKK 1374
AMTI +SQG +LD V + PR+ +YVA SR + L++ ++ L ++
Sbjct: 806 AMTIARSQGLSLDKVAICFPRNNLRINSVYVAMSRTVSSRFLRMNLNPLRER 857
>TEX_BORPE (Q45388) TEX protein
Length = 791
Score = 35.8 bits (81), Expect = 0.84
Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 20/204 (9%)
Query: 127 QGIRNPNLNMQ-TVSKLQQMLDDTNCHAKSFRKARDRL-RQGNVENLKLKLISDRTTDGR 184
QG P L + ++ +Q L+D K R+ R ++ R+ +E L +++D D
Sbjct: 93 QGKLTPELQQEIATAETKQRLEDLYAPYKPKRRTRAQIAREAGLEPLADAILADPACDPA 152
Query: 185 IYNQPTVSEVAALIVGDVDSAARRDIIMERQSGRLERIDEFHPAYLAYQYPLLFPYGEDG 244
++ A++ RDI+ ER + + LL E
Sbjct: 153 ALAAQYLNPEASINDAKAALDGARDILAERHAENAD---------------LLADIREHL 197
Query: 245 YRDDVLHRGIVAGKQSKMDRLTIREWLTFRLQSRKTEAMTILCARRLFQQFLVDCFTMME 304
+ +L+ +V GK++ D R+W F R + IL R QQ +++ +E
Sbjct: 198 WSTGLLYSKMVEGKET--DGANFRDWFDFNEPLRTLPSHRILALMRGRQQGVLELRVGLE 255
Query: 305 ADRLKWLRKNQSKLRVGKYRSLSN 328
AD L+ + +R+ + L N
Sbjct: 256 AD-LEAETPHPCVVRIASFLKLGN 278
>SOX5_MOUSE (P35710) Transcription factor SOX-5
Length = 763
Score = 35.8 bits (81), Expect = 0.84
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 317 KLRVGKYRSLSNNQGNVDGQTKKQGKRVVLPSSYVGGRRYMDQLYFDGMAISSDVGFPDL 376
KLR+G+Y+++ N+ Q G++ +P + G Y + GM S +
Sbjct: 639 KLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIA-TAGVVYPSAIAMAGMP-SPHLPSEHS 696
Query: 377 FITFTCNPSWPEIQRFVGAKGLKPHDRPDIIA 408
++ + P P IQ GAKG +PH + +I A
Sbjct: 697 SVSSSPEPGMPVIQSTYGAKGEEPHIKEEIQA 728
>ARS2_AQUAE (O66674) Putative arsenical pump-driving ATPase 2 (EC
3.6.3.16) (Arsenite-translocating ATPase 2) (Arsenical
resistance ATPase 2) (Arsenite-transporting ATPase 2)
Length = 299
Score = 34.7 bits (78), Expect = 1.9
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 933 VFFLHGYGGTGKTFMWTTLAASLRSQGKIVLTVATSGIASL 973
VFF G GG GKT + A L QGK VL ++T SL
Sbjct: 3 VFFFGGKGGVGKTTASSAFAVKLSEQGKKVLLLSTDPAHSL 43
>FTSY_BUCAP (Q8KA77) Cell division protein ftsY homolog
Length = 351
Score = 34.3 bits (77), Expect = 2.4
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 18/157 (11%)
Query: 875 YPTDYVMEELGNRLIYDELNYDEDALKLEFKRLFSTVTDEQRDIYHKIMSAVNGQNGGVF 934
+ TD ++ +L N + EL E L + ++S + ++ + ++ V
Sbjct: 99 HTTDQIISKLINDATHKELKNPEKVYFLLKEHMYSILNRVEKPL------KISNHTPFVI 152
Query: 935 FLHGYGGTGKTFMWTTLAASLRSQGKIVL-----TVATSGIASLLLPGGRTAHSKFKIPV 989
+ G GTGKT + LA + GK V+ T +GI L + G R IPV
Sbjct: 153 LVVGINGTGKTTTVSKLAKKYKLAGKSVMLAAADTFRAAGIEQLQILGKRN-----NIPV 207
Query: 990 PSFENST--CNIDGDSDLAKLLKVTNLIIWDEAPMAH 1024
S + + ++ D+ + + K +++I D A H
Sbjct: 208 ISQSSGSDPASVAFDAVKSAISKKIDVLIIDTAGRLH 244
>SOX5_HUMAN (P35711) Transcription factor SOX-5
Length = 763
Score = 33.9 bits (76), Expect = 3.2
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 317 KLRVGKYRSLSNNQGNVDGQTKKQGKRVVLPSSYVGGRRYMDQLYFDGMAISSDVGFPDL 376
KLR+G+Y+++ N+ Q G++ +P + G Y + GM S +
Sbjct: 639 KLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIA-TAGVVYPGAIAMAGMP-SPHLPSEHS 696
Query: 377 FITFTCNPSWPEIQRFVGAKGLKPHDRPDIIA 408
++ + P P IQ G KG +PH + +I A
Sbjct: 697 SVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQA 728
>MYHD_HUMAN (Q9UKX3) Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo)
Length = 1938
Score = 33.9 bits (76), Expect = 3.2
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 109 KFAQLYIFDTDNELQNRVQGIRNPNLNMQTVSKLQQMLDDTNCHAKSFRKARDRLRQGNV 168
K +Q I D +NE Q + ++ + S+LQ +DD H+ F+K L Q +
Sbjct: 1064 KMSQESIMDLENEKQQIEEKLKKKEFEL---SQLQARIDDEQVHSLQFQKKIKEL-QARI 1119
Query: 169 ENLKLKLISDRTTDGRIYNQ 188
E L+ ++ ++ T +I Q
Sbjct: 1120 EELEEEIEAEHTLRAKIEKQ 1139
>FTSY_MYCLE (O33010) Cell division protein ftsY homolog
Length = 430
Score = 33.9 bits (76), Expect = 3.2
Identities = 26/90 (28%), Positives = 42/90 (45%), Gaps = 3/90 (3%)
Query: 874 PYPTDYVMEELGNRLIYDELNYDEDALKLEFKRLFSTVTDEQRDIYHKIMSAVNGQNGGV 933
P T+ VM L +RL+ ++ + DA + L S + Q D+ I + + + V
Sbjct: 177 PVATESVMSALRSRLLNSNVHTESDARTMLRDVLISEL---QPDMDRSIRALPHADHPAV 233
Query: 934 FFLHGYGGTGKTFMWTTLAASLRSQGKIVL 963
+ G GTGKT LA L + G+ V+
Sbjct: 234 LLIVGVNGTGKTTTVGKLARVLVADGRRVV 263
>EX5A_ECOLI (P04993) Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)
(Exodeoxyribonuclease V 67 kDa polypeptide)
Length = 608
Score = 33.5 bits (75), Expect = 4.2
Identities = 31/120 (25%), Positives = 46/120 (37%), Gaps = 22/120 (18%)
Query: 1248 GTPIMLLRNLDQVEGLCNGTRLIVTRMANHVIEAKIISGKNVGNLTYIPRMSMSPSQSPW 1307
G P+M+ RN D GL NG I ++ GN+ + + ++ W
Sbjct: 479 GRPVMIARN-DSALGLFNGDIGIALDRGQGT---RVWFAMPDGNIKSVQPSRLPEHETTW 534
Query: 1308 PFKLIRRQFPIIVSYAMTINKSQGQTLDSVGLYLPRS---VFSHGQLYVAFSRVRTKAGL 1364
AMT++KSQG D L LP V + +Y A +R R + L
Sbjct: 535 ---------------AMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579
>EX5A_BUCBP (Q89AB2) Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)
Length = 618
Score = 33.5 bits (75), Expect = 4.2
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 24/133 (18%)
Query: 1248 GTPIMLLRNLDQVEGLCNGTRLIVTRMANHVIEAKIISGKNVGNLTYIPRMSMSPSQSPW 1307
G PI++L+N +++ L NG + AN ++ + KN + IP + Q+ W
Sbjct: 487 GKPILILKNNEEMN-LFNGECGLTLLDANKKLKVFFLP-KNQEQIYSIPIHLVPEHQTNW 544
Query: 1308 PFKLIRRQFPIIVSYAMTINKSQGQTLDSVGLYLP---RSVFSHGQLYVAFSRVRTKAGL 1364
MT++KSQG V L LP S+ + +Y A +R + K +
Sbjct: 545 ---------------TMTVHKSQGSEFSEVVLILPTIMTSILTKELIYTAVTRSKKKLTI 589
Query: 1365 ----KILIHDLEK 1373
I I L+K
Sbjct: 590 YSDENIFIKSLKK 602
>EX5A_BUCAI (P57530) Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)
Length = 602
Score = 33.5 bits (75), Expect = 4.2
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 26/136 (19%)
Query: 1247 VGTPIMLLRNLDQVEGLCNGTRLIVTRMANHVIEAKIISGKNVGNLTYIPRMSMSPSQSP 1306
+G PIM++ N ++ + NG I N +++ + N N
Sbjct: 480 IGKPIMIINN-NRALNVSNGNIGITNINKNGILQVSFLKENNTINNI------------- 525
Query: 1307 WPFKLIRRQFPIIVSYAMTINKSQGQTLDSVGLYLPR---SVFSHGQLYVAFSRVRTKAG 1363
P K++R ++A+T++KSQG + L LP + + LY +R R
Sbjct: 526 -PVKILRNYK---TAWAITVHKSQGSEFMNTALILPNFNSHILNKDTLYTGITRSR---- 577
Query: 1364 LKILIHDLEKKPLSNT 1379
KIL +KK NT
Sbjct: 578 -KILSIFSDKKIFLNT 592
>NBP2_MOUSE (Q9R061) Nucleotide binding protein 2 (NBP 2)
Length = 275
Score = 33.1 bits (74), Expect = 5.4
Identities = 33/117 (28%), Positives = 47/117 (39%), Gaps = 13/117 (11%)
Query: 933 VFFLHGYGGTGKTFMWTTLAASLRSQGKIV----LTVATSGIASLLLPGGRTAHSKFKIP 988
+ L G GG GK+ + T LA +LR QGK V + + I +L G+ H
Sbjct: 21 ILVLSGKGGVGKSTISTELALALRHQGKKVGILDVDLCGPSIPHMLRAQGKAVHQCDNGW 80
Query: 989 VPSFENSTCNIDGDSDLAKLLKVTNLIIWDEAPMAHKFCFEALDRTLKDIMSDTADG 1045
VP F + +I S L ++W P H +K +SD A G
Sbjct: 81 VPVFVDQEQSISLMSVGFLLENPDEAVVW-RGPKKHAL--------IKQFVSDVAWG 128
>YF33_METJA (Q58928) Hypothetical protein MJ1533
Length = 642
Score = 32.7 bits (73), Expect = 7.1
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 883 ELGNRLIYDELNYDEDALKLEFKRLFSTVTDEQRDIYHKIMSAVNGQNGGVFFLHGYGGT 942
+LGN I +AL++ R + E ++ K+M + + G+F + G G+
Sbjct: 237 QLGNIRISIARPPFSEALEVTAVRPVVKASLEDYELSDKLMERLKERAEGIF-VSGPPGS 295
Query: 943 GKTFMWTTLAASLRSQGKIVLTV 965
GK+ LA RSQGKIV T+
Sbjct: 296 GKSTFVAALAEFYRSQGKIVKTM 318
>HELI_ICHV1 (Q00092) Probable helicase
Length = 498
Score = 32.7 bits (73), Expect = 7.1
Identities = 20/62 (32%), Positives = 31/62 (49%), Gaps = 4/62 (6%)
Query: 1316 FPIIVSYAMTINKSQGQTLDSVGLYLPRSVFSHGQL----YVAFSRVRTKAGLKILIHDL 1371
FPI A+ +QG+TLD V P +S + YVA +RVRT+ +++ +
Sbjct: 407 FPIFPVAAINTYSAQGETLDRVIYAPPEKNYSMSSIRASAYVACTRVRTRTAIELSCNSF 466
Query: 1372 EK 1373
K
Sbjct: 467 AK 468
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.336 0.147 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,411,691
Number of Sequences: 164201
Number of extensions: 6718033
Number of successful extensions: 23682
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 23658
Number of HSP's gapped (non-prelim): 32
length of query: 1391
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1268
effective length of database: 39,777,331
effective search space: 50437655708
effective search space used: 50437655708
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 72 (32.3 bits)
Medicago: description of AC148528.7