BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148528.6 + phase: 0 /partial
         (310 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YK75_MYCTU (Q10683) Hypothetical protein Rv2075c/MT2135                39  0.016
EFTS_BUCAI (P57326) Elongation factor Ts (EF-Ts)                       33  0.90
ORC1_CANAL (O74270) Origin recognition complex subunit 1               33  1.2
ORC1_DEBHA (Q6BSE2) Origin recognition complex subunit 1               32  2.6
RPOC_AGRT5 (Q8UE09) DNA-directed RNA polymerase beta' chain (EC ...    30  5.8
NEL1_HUMAN (Q92832) Protein kinase C-binding protein NELL1 precu...    30  5.8
DNAA_BUCBP (P59567) Chromosomal replication initiator protein dnaA     30  10.0

>YK75_MYCTU (Q10683) Hypothetical protein Rv2075c/MT2135
          Length = 487

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 25/130 (19%)

Query: 43  LPFNHYSWLTTHNSYASRAANLSIDSKISSVMNQEDSITDQLRNGVRGIMLDMH-----D 97
           +P     WL THNS+ S + + ++    S   NQ+ S+  QL   VR + LD+H     +
Sbjct: 112 VPLRETQWLGTHNSFNSLSDSFTVSHADS---NQQLSLAQQLDIDVRALELDLHYLPRLE 168

Query: 98  YYG--DIWLCRG--------PCTIFTAFQPAI-NVLREINTFLTR--HRTEIVTVFIKDR 144
            +G   + +C G         CT+    +P +  VL +I  +L    H  E++ ++++D+
Sbjct: 169 GHGAPGVTVCHGLGPKNANLGCTV----EPLLATVLPQIANWLNAPGHTEEVILLYLEDQ 224

Query: 145 VTSPNGVNKV 154
           + + +    V
Sbjct: 225 LKNASAYESV 234


>EFTS_BUCAI (P57326) Elongation factor Ts (EF-Ts)
          Length = 268

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 19/84 (22%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 60  RAANLSIDSKISSVMNQEDSITDQLRNGVRGIMLDMH---DYYG--DIWLCRGPCTIFTA 114
           ++  L+ + KI+++ NQ  +I  +++N + G+ML+++   D+    ++++C G   +  A
Sbjct: 44  KSGKLTAEKKINNITNQ-GAIFSKIKNNI-GVMLELNCETDFVSKDNLFICLGEDILVEA 101

Query: 115 FQPAINVLREINTFLTRHRTEIVT 138
            +  I  + ++       RTE+V+
Sbjct: 102 LEKRIKDINQLKVIFESRRTELVS 125


>ORC1_CANAL (O74270) Origin recognition complex subunit 1
          Length = 805

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 120 NVLREINTFLTRHRTEIVTVFIKDRVTSPNGV--NKVFNKAGLRKFWFPVYKMPKNGSDW 177
           NV+     + T   ++++ + + + +  P  +  NK+ ++ GLR+  F  Y   + G D 
Sbjct: 525 NVMYNFFNWPTYSTSKLIVIAVANTMDLPERMLTNKIASRLGLRRIQFRGYTFQQLG-DI 583

Query: 178 LT--VKKMLRMNHRLIVFTSNATKEASERIA 206
           +T  ++ + + N R +V TS+A   AS ++A
Sbjct: 584 ITHRLEMITKNNRRKVVITSDAIGFASRKVA 614


>ORC1_DEBHA (Q6BSE2) Origin recognition complex subunit 1
          Length = 810

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 13/95 (13%)

Query: 120 NVLREINTFLTRHRTEIVTVFIKDRVTSPNGV--NKVFNKAGLRKFWFPVYKMPKNGS-- 175
           NV+     + T   ++++ + + + +  P  V  NK+ ++ GLR+  F  Y   + GS  
Sbjct: 519 NVMYNFFNWPTYSNSKLIVIAVANTMDLPERVLSNKISSRLGLRRIQFIGYTFEQLGSII 578

Query: 176 ----DWLTVKKMLRMNHRLIVFTSNATKEASERIA 206
               D LT     + N R ++  S+A   AS ++A
Sbjct: 579 KHRLDMLT-----KQNKRKVIINSDAIGFASRKVA 608


>RPOC_AGRT5 (Q8UE09) DNA-directed RNA polymerase beta' chain (EC
           2.7.7.6) (RNAP beta' subunit) (Transcriptase beta'
           chain) (RNA polymerase beta' subunit)
          Length = 1402

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 222 MGRDHCLHRAESYPMNTTTKSLVLMNYYRNVLNSNEACKDNSSPLIRKMH 271
           M  ++ LH A  +P+   ++ +VL  YY +++N NE  +  +   I ++H
Sbjct: 487 MSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELH 536


>NEL1_HUMAN (Q92832) Protein kinase C-binding protein NELL1
           precursor (NEL-like protein 1) (Nel-related protein 1)
          Length = 810

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 3   GETCSRDVNDCGTGLQCLECNSQSRCTRV 31
           G  C +D+++C  G+  +EC++ SRC  +
Sbjct: 543 GSHCEKDIDECSEGI--IECHNHSRCVNL 569


>DNAA_BUCBP (P59567) Chromosomal replication initiator protein dnaA
          Length = 457

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 26/149 (17%)

Query: 146 TSPNGVNKVFNKAGLRKFWFPVYKMPKNGSDWLTVKKMLRMNHRL--IVFTS-------- 195
           T+P  + K+     ++K +F    + KN    L  K    +N +L  I+++S        
Sbjct: 71  TTPTLMLKICKPKIIQKKFFNELTLKKN---ILNSKLTYNVNTKLSNIIYSSEINTNYTF 127

Query: 196 -NATKEASERIAYEWNYVVENK-----------YGNDGMGRDHCLHR-AESYPMNTTTKS 242
            N TK  S ++A++  Y + +            YG  G+G+ H LH  A +      T  
Sbjct: 128 QNFTKGQSNQLAFKTIYKIAHNPGKNYFNPLFLYGKSGLGKTHLLHAVANTILKYKNTIK 187

Query: 243 LVLMNYYRNVLNSNEACKDNSSPLIRKMH 271
           ++ +N    + N   + K+N+    +K +
Sbjct: 188 IIYINSENFIQNMITSLKNNTIEEFKKYY 216


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,439,654
Number of Sequences: 164201
Number of extensions: 1507521
Number of successful extensions: 3223
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3221
Number of HSP's gapped (non-prelim): 7
length of query: 310
length of database: 59,974,054
effective HSP length: 110
effective length of query: 200
effective length of database: 41,911,944
effective search space: 8382388800
effective search space used: 8382388800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)