BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148525.11 + phase: 0 /pseudo
         (88 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TRSX_VIBCH (Q79S39) HTH-type transcriptional regulator for conju...    27  7.0
TRME_SHEPU (Q8GJK1) HTH-type transcriptional regulator for conju...    27  7.0
TR96_PRORE (Q79RI9) HTH-type transcriptional regulator for conju...    27  7.0
CXA6_RAT (P28233) Gap junction alpha-6 protein (Connexin 33) (Cx33)    27  7.0
GCP4_MOUSE (Q9D4F8) Gamma-tubulin complex component 4 (GCP-4)          27  9.2
GCP4_HUMAN (Q9UGJ1) Gamma-tubulin complex component 4 (GCP-4) (h...    27  9.2

>TRSX_VIBCH (Q79S39) HTH-type transcriptional regulator for
           conjugative element SXT
          Length = 215

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 12/36 (33%), Positives = 17/36 (46%)

Query: 2   RVSGLQWLQHVSYLVIDQGLLSVIAERWHEVTSSFH 37
           R+  + W+Q   +  I +G     AE W EVT   H
Sbjct: 84  RIPLINWVQAGDWTEIAEGFAHEDAEEWREVTGKAH 119


>TRME_SHEPU (Q8GJK1) HTH-type transcriptional regulator for
           conjugative element pMERPH
          Length = 215

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 12/36 (33%), Positives = 17/36 (46%)

Query: 2   RVSGLQWLQHVSYLVIDQGLLSVIAERWHEVTSSFH 37
           R+  + W+Q   +  I +G     AE W EVT   H
Sbjct: 84  RIPLINWVQAGDWTEIAEGFAHEDAEEWREVTGKAH 119


>TR96_PRORE (Q79RI9) HTH-type transcriptional regulator for
           conjugative element R391 (ORF-96 protein)
          Length = 215

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 12/36 (33%), Positives = 17/36 (46%)

Query: 2   RVSGLQWLQHVSYLVIDQGLLSVIAERWHEVTSSFH 37
           R+  + W+Q   +  I +G     AE W EVT   H
Sbjct: 84  RIPLINWVQAGDWTEIAEGFAHEDAEEWREVTGKAH 119


>CXA6_RAT (P28233) Gap junction alpha-6 protein (Connexin 33) (Cx33)
          Length = 286

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 15/52 (28%), Positives = 25/52 (47%)

Query: 37  HLPIWEMIVTLDDLSCLLHLSIESHMLYHNIYLTRSEAVDLMVELLGSDSGE 88
           H+ +W + V    +  LLHL+   +++  N  L + E  +L V      SGE
Sbjct: 74  HVRLWVLQVIFVSVPTLLHLAHVYYVIRQNEKLKKQEEEELKVAHFNGASGE 125


>GCP4_MOUSE (Q9D4F8) Gamma-tubulin complex component 4 (GCP-4)
          Length = 667

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 15/46 (32%), Positives = 24/46 (51%)

Query: 30  HEVTSSFHLPIWEMIVTLDDLSCLLHLSIESHMLYHNIYLTRSEAV 75
           H+V  +F     ++++  D+L  LLHL+IE H   H    T+   V
Sbjct: 390 HDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKDHKADATQPREV 435


>GCP4_HUMAN (Q9UGJ1) Gamma-tubulin complex component 4 (GCP-4)
           (hGCP4) (h76p) (Hgrip76)
          Length = 667

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 30  HEVTSSFHLPIWEMIVTLDDLSCLLHLSIESHMLYHNIYLTRS 72
           H+V  +F     ++++  D+L  LLHL+IE H   H    T++
Sbjct: 390 HDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKADATQA 432


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.323    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,993,391
Number of Sequences: 164201
Number of extensions: 325729
Number of successful extensions: 667
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 6
length of query: 88
length of database: 59,974,054
effective HSP length: 64
effective length of query: 24
effective length of database: 49,465,190
effective search space: 1187164560
effective search space used: 1187164560
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)