BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148486.10 - phase: 0
(659 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PAB2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bin... 862 0.0
PAB3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bin... 607 e-173
PAB5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bin... 597 e-170
PAB1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bindi... 480 e-135
PAB1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bin... 480 e-135
PAB1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bin... 480 e-135
PAB1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bin... 479 e-135
PAB4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bin... 478 e-134
PAB1_XENLA (P20965) Polyadenylate-binding protein 1 (Poly(A)-bin... 476 e-133
PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi... 471 e-132
PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi... 467 e-131
PAB3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bin... 443 e-124
PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a... 418 e-116
PABX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g3... 375 e-103
PAB5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bin... 310 1e-83
PAB5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bin... 310 1e-83
PAB5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bin... 310 1e-83
PAB5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bin... 310 1e-83
PAB5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bin... 310 1e-83
PAB5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bin... 310 1e-83
>PAB2_ARATH (P42731) Polyadenylate-binding protein 2
(Poly(A)-binding protein 2) (PABP 2)
Length = 629
Score = 862 bits (2226), Expect = 0.0
Identities = 446/665 (67%), Positives = 523/665 (78%), Gaps = 44/665 (6%)
Query: 1 MAQIQVQHQTP-------APVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFN 53
MAQ+Q+Q QTP PA S G A QF TSLYVGDL+ NV DSQL+D F
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGAT---ATQFGNTSLYVGDLDFNVTDSQLFDAFG 57
Query: 54 QVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPS 113
Q+G VV+VRVCRDL TRRSLGYGYVNFTNPQDAARA+ LN+ P+ K IRVMYSHRDPS
Sbjct: 58 QMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPS 117
Query: 114 SRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSA 173
R+SG NIFIKNLD++IDHKALHDTFSSFG I+SCK+A D SGQSKGYGFVQ+ E+SA
Sbjct: 118 VRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESA 177
Query: 174 QNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGA 233
Q AI+KLNGML+NDKQV+VG FLR+Q+RD+ +KTKF NVYVKNL+ES T+DDLKN FG
Sbjct: 178 QKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGE 237
Query: 234 YGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSERE 293
YG ITSAV+M+D +G+SK FGFVNFENA+DAA+AVE+LNG K DD+EWYVG+AQKKSERE
Sbjct: 238 YGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERE 297
Query: 294 QELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFT 353
EL+ R+EQ +KE+ DKFQ NLY+KNLD SI+DEKLKE+FS FGT+TS KV
Sbjct: 298 TELRVRYEQNLKEA-ADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV------- 349
Query: 354 DIRVIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQ 413
MRDPNG S+GSGFVAF+TPEEA+ A+ +++GKMI SKPLYVA+AQRKEDRR RLQ
Sbjct: 350 -----MRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQ 404
Query: 414 AQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMR 473
AQFSQ+RPVA+ PSV PRMP+YPPG PG+GQQ YGQ PPAM+PPQ G+GYQQQLVPGMR
Sbjct: 405 AQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMR 464
Query: 474 PGGGPMPSYFVPMVQQGQQGQRP-GGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRS 532
PGGGP+PS+F+PMVQ Q QRP GGRR G Q QQ PMMQQQM PR R++RYP GR
Sbjct: 465 PGGGPVPSFFMPMVQ--PQQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRG 522
Query: 533 NIQDAPVQNIGGGMMSYDMGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLV 592
D P ++G M P+ I ALA+ L+NA PEQQRTMLGE LYPLV
Sbjct: 523 GSGDVPPYDMGNNM---------------PLTIGALASNLSNATPEQQRTMLGEVLYPLV 567
Query: 593 DQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGNSPADQLA 652
+Q+E +SAAKVTGMLLEMDQ EVLHL+ESP+ALKAKVAEAM+VLR+V+ +QLA
Sbjct: 568 EQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLA 624
Query: 653 SLSLN 657
SL+L+
Sbjct: 625 SLNLS 629
>PAB3_ARATH (O64380) Polyadenylate-binding protein 3
(Poly(A)-binding protein 3) (PABP 3)
Length = 660
Score = 607 bits (1565), Expect = e-173
Identities = 346/647 (53%), Positives = 438/647 (67%), Gaps = 40/647 (6%)
Query: 5 QVQHQTPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVC 64
Q Q P +P PS VV + + +SLY GDL+ V ++ L+DLF V VVSVRVC
Sbjct: 24 QTSVQVPVSIPLPSPVVVADQTHP--NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVC 81
Query: 65 RDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFI 124
RD RRSLGY Y+NF+NP DA RA++ LN+TP+ ++ IR+M S+RDPS+R SG NIFI
Sbjct: 82 RD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFI 140
Query: 125 KNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGML 184
KNLD +ID+KAL +TFSSFG I+SCK+A D +G+SKGYGFVQFE E+SAQ AIDKLNGML
Sbjct: 141 KNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGML 200
Query: 185 INDKQVFVGHFLRKQD--RDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVL 242
+NDKQVFVGHF+R+Q+ RD +F NVYVKNL + ED+L+ FG +G I+SAV+
Sbjct: 201 MNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVV 260
Query: 243 MRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQ 302
MRD G S+CFGFVNFE E AA AVE +NG + D+ YVG+AQKKSERE+EL+ +FEQ
Sbjct: 261 MRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQ 320
Query: 303 TVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDP 362
+ + +K QG NLYLKNLDDS+ DEKLKEMFSE+G +TS KV M +P
Sbjct: 321 E-RINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKV------------MLNP 367
Query: 363 NGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPV 422
G+SRG GFVA+S PEEA RAL EMNGKMI KPLY+A+AQRKEDRRA LQA FSQ+R
Sbjct: 368 QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAP 427
Query: 423 AITPSVAPRMPLYPPG--TPGLGQQFMYGQGPPAMMPPQ-AGFGYQQQLVPGMRPGGGPM 479
+PPG PG Q GQ +M+P Q G+G+Q Q +PGMRPG GP
Sbjct: 428 GPMSGFH-----HPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP- 481
Query: 480 PSYFV--PMVQQGQQGQRPGGRRGGPG-QQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQD 536
++ V P+ +Q Q G R G RRG QQ QQ +M + P RY G SN ++
Sbjct: 482 GNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRNPSPGM---RYMNGASNGRN 538
Query: 537 APVQNIGGGMMSYDMGGLPL------RDVVPPMPIHALATALANAPPEQQRTMLGEALYP 590
++ G++ + LP+ P +PI L ++LA+A P + MLGE LYP
Sbjct: 539 GMDSSVPQGILP-PIIPLPIDASSISHQKAPLLPISKLTSSLASASPADRTRMLGEQLYP 597
Query: 591 LVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLR 637
LV++ E AKVTGMLLEMDQ E+LHL+ESP+ALK+KV+EA++VLR
Sbjct: 598 LVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
>PAB5_ARATH (Q05196) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 668
Score = 597 bits (1540), Expect = e-170
Identities = 345/673 (51%), Positives = 447/673 (66%), Gaps = 46/673 (6%)
Query: 12 APVPAPSNGVVPNVA---------NQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVR 62
AP P P+ V VA +SLYVGDL+ +VN+S L DLFNQV V ++R
Sbjct: 16 APPPFPAVSQVAAVAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLR 75
Query: 63 VCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANI 122
VCRDL T RSLGY YVNF NP+DA+RA++ LN+ P+ ++ IR+M S+RDPS+R SG N+
Sbjct: 76 VCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNV 134
Query: 123 FIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNG 182
FIKNLD +ID+KAL++TFSSFG I+SCK+A D G+SKGYGFVQFE E++AQ AIDKLNG
Sbjct: 135 FIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 194
Query: 183 MLINDKQVFVGHFLRKQDRDNVLSKT--KFNNVYVKNLSESFTEDDLKNEFGAYGTITSA 240
ML+NDKQVFVGHF+R+QDR S F NVYVKNL + T+D+LK FG YG I+SA
Sbjct: 195 MLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSA 254
Query: 241 VLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRF 300
V+M+D G S+ FGFVNF + E AA AVE +NG + ++ YVG+AQKKS+RE+EL+ +F
Sbjct: 255 VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKF 314
Query: 301 EQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMR 360
EQ + S +K QG NLYLKNLDDS+ DEKLKEMFSE+G +TS KV M
Sbjct: 315 EQE-RISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKV------------MM 361
Query: 361 DPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMR 420
+ G+SRG GFVA+S PEEA A+ EMNGKMI KPLYVA+AQRKE+R+A LQ+ F+Q+R
Sbjct: 362 NSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIR 421
Query: 421 -PVAITPSVAPRMPL--YPPGTP--GLGQQFMYGQGPPAMMPPQ-AGFGYQQQLVPGMRP 474
P ++P +P +PPG P G G ++P Q G+GYQ Q +PGMRP
Sbjct: 422 SPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFMPGMRP 481
Query: 475 GGGPMPSYFV--PMVQQGQQGQRPGGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRS 532
G GP P++ + P+ +Q Q G R G RRG Q QQQ + +Q R+ G
Sbjct: 482 GAGP-PNFMMPFPLQRQTQPGPRVGFRRGANNMQ-----QQFQQQQMLQQNASRFMGGAG 535
Query: 533 NIQDAPVQNIGGGMM------SYDMGGLPLRDVVP-PMPIHALATALANAPPEQQRTMLG 585
N ++ + G++ S + P R P P+ I LA+ LA A P++ MLG
Sbjct: 536 NRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLG 595
Query: 586 EALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGN 645
+ LYPLV+Q E +AAKVTGMLLEMDQ E+LHL+ESP+ALKAKV+EA++VLR +
Sbjct: 596 DHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAV 655
Query: 646 SPADQLASLSLND 658
S D +LS ++
Sbjct: 656 SSVDDQFALSSSE 668
>PAB1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding
protein 1) (PABP 1)
Length = 636
Score = 480 bits (1235), Expect = e-135
Identities = 278/642 (43%), Positives = 391/642 (60%), Gaps = 61/642 (9%)
Query: 26 ANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQD 85
A + SLYVGDL +V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 86 AARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQ 145
A RALD +NF + K +R+M+S RDPS RKSG NIFIKNLDK+ID+KAL+DTFS+FG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 146 IMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVL 205
I+SCK+ D +G SKGYGFV FE +++A+ AI+K+NGML+ND++VFVG F +++R+ L
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 206 S--KTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAED 263
+F NVY+KN E ++ LK FG +G S +M D G+SK FGFV+FE ED
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 264 AAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLD 323
A KAV+ +NGK+++ ++ YVG+AQKK ER+ ELK +FEQ +K+ + ++QG+NLY+KNLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ-MKQDRITRYQGVNLYVKNLD 302
Query: 324 DSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRA 383
D I DE+L++ FS FGTITS KV G S+G GFV FS+PEEA++A
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMM-------------EGGRSKGFGFVCFSSPEEATKA 349
Query: 384 LGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ-MRPVAITPSVAPRMPLYPPGTPGL 442
+ EMNG+++ +KPLYVA+AQRKE+R+A L Q+ Q M V P+ P + Y P P
Sbjct: 350 VTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPN--PVINPYQPAPP-- 405
Query: 443 GQQFMYG----QGPPAMMPP--------------QAGFGYQQQLVPGMRPGGGPMPSYF- 483
FM Q A PP Q + Q +PG P P +
Sbjct: 406 SGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST 465
Query: 484 -------VPMVQQGQQGQRPGGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQD 536
VP V Q+ + GP + +P+ Y+Y G N
Sbjct: 466 MRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQ---YKYAAGVRN--- 519
Query: 537 APVQNIGG-GMMSYDMGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQL 595
P Q++ ++ + ++ P A+ LA+APP++Q+ MLGE L+PL+ +
Sbjct: 520 -PQQHLNAQPQVTMQQPAVHVQGQEP-----LTASMLASAPPQEQKQMLGERLFPLIQAM 573
Query: 596 EHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLR 637
A K+TGMLLE+D E+LH++ESP++L++KV EA+ VL+
Sbjct: 574 HPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>PAB1_HUMAN (P11940) Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 480 bits (1235), Expect = e-135
Identities = 278/642 (43%), Positives = 392/642 (60%), Gaps = 61/642 (9%)
Query: 26 ANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQD 85
A + SLYVGDL +V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 86 AARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQ 145
A RALD +NF + K +R+M+S RDPS RKSG NIFIKNLDK+ID+KAL+DTFS+FG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 146 IMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVL 205
I+SCK+ D +G SKGYGFV FE +++A+ AI+K+NGML+ND++VFVG F +++R+ L
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 206 S--KTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAED 263
+F NVY+KN E ++ LK+ FG +G S +M D G+SK FGFV+FE ED
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 264 AAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLD 323
A KAV+ +NGK+++ ++ YVG+AQKK ER+ ELK +FEQ +K+ + ++QG+NLY+KNLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ-MKQDRITRYQGVNLYVKNLD 302
Query: 324 DSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRA 383
D I DE+L++ FS FGTITS KV G S+G GFV FS+PEEA++A
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMM-------------EGGRSKGFGFVCFSSPEEATKA 349
Query: 384 LGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ-MRPVAITPSVAPRMPLYPPGTPGL 442
+ EMNG+++ +KPLYVA+AQRKE+R+A L Q+ Q M V P+ P + Y P P
Sbjct: 350 VTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPN--PVINPYQPAPP-- 405
Query: 443 GQQFMYG----QGPPAMMPP--------------QAGFGYQQQLVPGMRPGGGPMPSYF- 483
FM Q A PP Q + Q +PG P P +
Sbjct: 406 SGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST 465
Query: 484 -------VPMVQQGQQGQRPGGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQD 536
VP V Q+ + GP + +P+ Y+Y G N
Sbjct: 466 MRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ---YKYAAGVRN--- 519
Query: 537 APVQNIGG-GMMSYDMGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQL 595
P Q++ ++ + ++ P A+ LA+APP++Q+ MLGE L+PL+ +
Sbjct: 520 -PQQHLNAQPQVTMQQPAVHVQGQEP-----LTASMLASAPPQEQKQMLGERLFPLIQAM 573
Query: 596 EHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLR 637
A K+TGMLLE+D E+LH++ESP++L++KV EA+ VL+
Sbjct: 574 HPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>PAB1_BOVIN (P61286) Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 480 bits (1235), Expect = e-135
Identities = 278/642 (43%), Positives = 392/642 (60%), Gaps = 61/642 (9%)
Query: 26 ANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQD 85
A + SLYVGDL +V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 86 AARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQ 145
A RALD +NF + K +R+M+S RDPS RKSG NIFIKNLDK+ID+KAL+DTFS+FG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 146 IMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVL 205
I+SCK+ D +G SKGYGFV FE +++A+ AI+K+NGML+ND++VFVG F +++R+ L
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 206 S--KTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAED 263
+F NVY+KN E ++ LK+ FG +G S +M D G+SK FGFV+FE ED
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 264 AAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLD 323
A KAV+ +NGK+++ ++ YVG+AQKK ER+ ELK +FEQ +K+ + ++QG+NLY+KNLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ-MKQDRITRYQGVNLYVKNLD 302
Query: 324 DSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRA 383
D I DE+L++ FS FGTITS KV G S+G GFV FS+PEEA++A
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMM-------------EGGRSKGFGFVCFSSPEEATKA 349
Query: 384 LGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ-MRPVAITPSVAPRMPLYPPGTPGL 442
+ EMNG+++ +KPLYVA+AQRKE+R+A L Q+ Q M V P+ P + Y P P
Sbjct: 350 VTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPN--PVINPYQPAPP-- 405
Query: 443 GQQFMYG----QGPPAMMPP--------------QAGFGYQQQLVPGMRPGGGPMPSYF- 483
FM Q A PP Q + Q +PG P P +
Sbjct: 406 SGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST 465
Query: 484 -------VPMVQQGQQGQRPGGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQD 536
VP V Q+ + GP + +P+ Y+Y G N
Sbjct: 466 MRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ---YKYAAGVRN--- 519
Query: 537 APVQNIGG-GMMSYDMGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQL 595
P Q++ ++ + ++ P A+ LA+APP++Q+ MLGE L+PL+ +
Sbjct: 520 -PQQHLNAQPQVTMQQPAVHVQGQEP-----LTASMLASAPPQEQKQMLGERLFPLIQAM 573
Query: 596 EHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLR 637
A K+TGMLLE+D E+LH++ESP++L++KV EA+ VL+
Sbjct: 574 HPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>PAB1_MOUSE (P29341) Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 479 bits (1234), Expect = e-135
Identities = 278/642 (43%), Positives = 391/642 (60%), Gaps = 61/642 (9%)
Query: 26 ANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQD 85
A + SLYVGDL +V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 86 AARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQ 145
A RALD +NF + K +R+M+S RDPS RKSG NIFIKNLDK+ID+KAL+DTFS+FG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 146 IMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVL 205
I+SCK+ D +G SKGYGFV FE +++A+ AI+K+NGML+ND++VFVG F +++R+ L
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAEL 183
Query: 206 S--KTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAED 263
+F NVY+KN E ++ LK FG +G S +M D G+SK FGFV+FE ED
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 264 AAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLD 323
A KAV+ +NGK+++ ++ YVG+AQKK ER+ ELK +FEQ +K+ + ++QG+NLY+KNLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ-MKQDRITRYQGVNLYVKNLD 302
Query: 324 DSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRA 383
D I DE+L++ FS FGTITS KV G S+G GFV FS+PEEA++A
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMM-------------EGGRSKGFGFVCFSSPEEATKA 349
Query: 384 LGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ-MRPVAITPSVAPRMPLYPPGTPGL 442
+ EMNG+++ +KPLYVA+AQRKE+R+A L Q+ Q M V P+ P + Y P P
Sbjct: 350 VTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPN--PVINPYQPAPP-- 405
Query: 443 GQQFMYG----QGPPAMMPP--------------QAGFGYQQQLVPGMRPGGGPMPSYF- 483
FM Q A PP Q + Q +PG P P +
Sbjct: 406 SGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST 465
Query: 484 -------VPMVQQGQQGQRPGGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQD 536
VP V Q+ + GP + +P+ Y+Y G N
Sbjct: 466 MRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ---YKYAAGVRN--- 519
Query: 537 APVQNIGG-GMMSYDMGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQL 595
P Q++ ++ + ++ P A+ LA+APP++Q+ MLGE L+PL+ +
Sbjct: 520 -PQQHLNAQPQVTMQQPAVHVQGQEP-----LTASMLASAPPQEQKQMLGERLFPLIQAM 573
Query: 596 EHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLR 637
A K+TGMLLE+D E+LH++ESP++L++KV EA+ VL+
Sbjct: 574 HPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>PAB4_HUMAN (Q13310) Polyadenylate-binding protein 4
(Poly(A)-binding protein 4) (PABP 4) (Inducible
poly(A)-binding protein) (iPABP) (Activated-platelet
protein-1) (APP-1)
Length = 644
Score = 478 bits (1231), Expect = e-134
Identities = 284/647 (43%), Positives = 393/647 (59%), Gaps = 62/647 (9%)
Query: 26 ANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQD 85
A+ + SLYVGDL +V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF P D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 86 AARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQ 145
A RALD +NF + K IR+M+S RDPS RKSG N+FIKNLDK+ID+KAL+DTFS+FG
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 146 IMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVL 205
I+SCK+ D +G SKGY FV FE +++A AI+K+NGML+ND++VFVG F +++R+ L
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 206 -SKTK-FNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAED 263
+K K F NVY+KN E ++ LK F +G S +MRD +G+SK FGFV++E ED
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 264 AAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLD 323
A KAVE +NGK++ + +VG+AQKK ER+ ELK +FEQ +K+ + ++QG+NLY+KNLD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ-LKQERISRYQGVNLYIKNLD 302
Query: 324 DSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRA 383
D+I DEKL++ FS FG+ITS KV +G S+G GFV FS+PEEA++A
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVML-------------EDGRSKGFGFVCFSSPEEATKA 349
Query: 384 LGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGTPGLG 443
+ EMNG+++ SKPLYVA+AQRKE+R+A L Q+ Q P + P G
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR---VAGMRALPANAILNQFQPAAG 406
Query: 444 QQFM----YGQG-PPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQRPGG 498
F+ QG PP P Q Q + P + GG P +P + Q G RP
Sbjct: 407 GYFVPAVPQAQGRPPYYTPNQLA---QMRPNPRWQQGGRPQGFQGMPSAIR-QSGPRPTL 462
Query: 499 RRGGP-GQQPPQQ-----------------------VPMMQQQMLPRQRVYRYPPGRSNI 534
R P G + P + VP Q + PR V P
Sbjct: 463 RHLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAV-- 520
Query: 535 QDAPVQNIGGGMMSYDMGGLPLRDVVPPMPIHA----LATALANAPPEQQRTMLGEALYP 590
AP + + S PL+ P + + A+ LA APP++Q+ MLGE L+P
Sbjct: 521 --APYK-YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFP 577
Query: 591 LVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLR 637
L+ + + A K+TGMLLE+D E+LH++ESP++L++KV EA+ VL+
Sbjct: 578 LIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>PAB1_XENLA (P20965) Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1)
Length = 633
Score = 476 bits (1224), Expect = e-133
Identities = 274/638 (42%), Positives = 385/638 (59%), Gaps = 55/638 (8%)
Query: 26 ANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQD 85
A + SLYVGDL +V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF P D
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 86 AARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQ 145
A RALD +NF + + +R+M+S RDPS RKSG NIFIKNLDK+ID+KAL+DTFS+FG
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 146 IMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVL 205
I+SCK+ D +G SKGYGFV FE +++A+ AIDK+NGML+ND++VFVG F +++R+ L
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 206 S--KTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAED 263
+F NVY+KN + ++ LK FG YG S +M D +G+SK FGFV+FE ED
Sbjct: 184 GARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHED 243
Query: 264 AAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLD 323
A KAV+ + GK ++ + +VG+AQKK ER+ ELK +FEQ + + + ++QG+NLY+KNLD
Sbjct: 244 AQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQ-MNQDRITRYQGVNLYVKNLD 302
Query: 324 DSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRA 383
D I DE+L++ F FGTITS KV G S+G GFV FS+PEEA++A
Sbjct: 303 DGIDDERLRKEFLPFGTITSAKVMM-------------EGGRSKGFGFVCFSSPEEATKA 349
Query: 384 LGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ-MRPVAI-TPSVAPRMPLYPPGT-- 439
+ EMNG+++ +KPLYVA+AQRKE+R+A L Q+ Q M V + P + P P PP +
Sbjct: 350 VTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQP--PPSSYF 407
Query: 440 -----PGLGQQFMYGQGPPAMMPP------QAGFGYQQQLVPGMRPGGGPMPSYF----- 483
P + Y G A + P Q + Q +PG P P F
Sbjct: 408 MAAIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRP 467
Query: 484 ----VPMVQQGQQGQRPGGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQDAPV 539
VP V Q+ + GP + +P+ Y+Y G N Q
Sbjct: 468 ASNQVPRVMSAQRVANTSTQTMGPRPTTAAAAAASAVRAVPQ---YKYAAGVRNQQHLNT 524
Query: 540 QNIGGGMMSYDMGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDS 599
Q ++ + ++ P A+ LA APP++Q+ MLGE L+PL+ +
Sbjct: 525 Q----PQVAMQQPAVHVQGQEP-----LTASMLAAAPPQEQKQMLGERLFPLIQAMHPTL 575
Query: 600 AAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLR 637
A K+TGMLLE+D E+LH++ESP++L+ KV EA+ VL+
Sbjct: 576 AGKITGMLLEIDNSELLHMLESPESLRLKVDEAVAVLQ 613
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding
protein) (PABP)
Length = 653
Score = 471 bits (1212), Expect = e-132
Identities = 279/647 (43%), Positives = 375/647 (57%), Gaps = 75/647 (11%)
Query: 10 TPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLAT 69
T A A +G P A SLYVG+L+ +V ++ L++LFN +G V S+RVCRD T
Sbjct: 64 TNASSVATPSGTAPTSA------SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVT 117
Query: 70 RRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDK 129
RRSLGY YVNF N +D +ALD LN+T + + R+M+S RDPS RK GT N+FIKNLD
Sbjct: 118 RRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDP 177
Query: 130 TIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQ 189
ID+KALHDTFS+FG+I+SCK+A D G +KGYGFV F++ +SA AI+ +NGML+NDK+
Sbjct: 178 AIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKK 237
Query: 190 VFVGHFLRKQDRDNVLS--KTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDAD 247
V+VGH + +++R + + K F NVY+KNL TE + + FG +G ITS L++D +
Sbjct: 238 VYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN 297
Query: 248 GRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKES 307
+ + FGFVN+ N E A KAV+ LN K+ ++ YVG+AQKK ERE+EL+ R+EQ +K
Sbjct: 298 DKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQ-MKLE 356
Query: 308 VVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSR 367
++K+QG+NL++KNL D + DE+LK FS FGTITS K IM D G S+
Sbjct: 357 KMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAK------------IMTDEQGKSK 404
Query: 368 GSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPS 427
G GFV ++TPEEA++A+ EMN +M+ KPLYVA+AQRKE RR++L+AQ +
Sbjct: 405 GFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQ 464
Query: 428 VAPRMPLYPPGTPGLGQQFMYGQG----PPAM----MPPQAGFGYQQQLVPGMR---PGG 476
VA + P G +YG G P A+ MP G + PGM P G
Sbjct: 465 VAAAAGI-PAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVPGHNGPMPMYPGMPTQFPAG 523
Query: 477 GPMPSYFVPMVQQGQQGQRPGGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQD 536
GP P Y PG GP P Q PMM +P G + +
Sbjct: 524 GPAPGY-------------PGMNARGP--VPAQGRPMMMPGSVP-------SAGPAEAEA 561
Query: 537 APVQNIGGGMMSYDMGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQLE 596
P VP MP A LA P E ++ +LGE LYP V E
Sbjct: 562 VP--------------------AVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVRE 601
Query: 597 HDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQ 643
+ K+TGMLLEM E+L L+E AL +V EA+ VL+ Q+
Sbjct: 602 EKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVLQEFVDQE 648
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding
protein) (PABP)
Length = 632
Score = 467 bits (1201), Expect = e-131
Identities = 279/642 (43%), Positives = 388/642 (59%), Gaps = 58/642 (9%)
Query: 33 SLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDV 92
SLYVGDL +VN+S L+D F+ G V+S+RVCRD+ TRRSLGY YVNF P DA RALD
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 93 LNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIA 152
+NF + NK IR+M+S RDPS R+SG N+FIKNLD+ ID+KA++DTFS+FG I+SCK+A
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 153 TDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNN 212
TD G SKGYGFV FE E++A +IDK+NGML+N K+V+VG F+ +++++ F N
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQELGEKAKLFTN 182
Query: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALN 272
VYVKN +E F ++ LK F YG ITS +M DG+SK FGFV FE E A AV+ALN
Sbjct: 183 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 242
Query: 273 GKKV-DDEEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKL 331
GK + + + YV +AQKK+ER+QELK +FE+ +K+ + G+NLY+KNLDD+I D++L
Sbjct: 243 GKDMGEGKSLYVARAQKKAERQQELKRKFEE-LKQKRHESVFGVNLYVKNLDDTIDDDRL 301
Query: 332 KEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKM 391
+ FS +G ITS KV M D G S+G GFV F+ EA+ A+ E+NG++
Sbjct: 302 RIAFSPYGNITSAKV------------MTDEEGRSKGFGFVCFNPESEATCAVTELNGRV 349
Query: 392 IVSKPLYVAVAQRKEDRRARLQAQFSQ-------------MRPVAITPSVAPRMPLYPP- 437
+ SKPLYVA+AQRKE+R+A L +Q+ + +P A + P +P
Sbjct: 350 VGSKPLYVALAQRKEERKADLASQYMRHMTGMRMQQLGQIYQPNAASGFFVPTLPSNQRF 409
Query: 438 -GTPGLGQQFMYGQGPPAMMPPQAGFGYQ--QQLVPGMRPGGGPMPSYF----------V 484
G+ Q + P + PP A G Q G + G +P+ F
Sbjct: 410 FGSQVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQ 469
Query: 485 PMVQ------QGQQGQRPGGRRGGPGQQ---PPQQVPMMQQQMLPRQRVYRYPPGRSNIQ 535
P VQ R G R GQQ P Q+P Q +QR Y SN++
Sbjct: 470 PQVQGTHAAAAAANNMRNTGARAITGQQTAAPNMQIPGAQIAGGAQQRTSNY-KYTSNMR 528
Query: 536 DAPVQNIGGGMMSYDMGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQL 595
+ PV + + +P + + +A+ LANA P++Q+ +LGE LYP+++ +
Sbjct: 529 NPPVPQL------HQTQPIP-QQLQGKNSEKLIASLLANAKPQEQKQILGERLYPMIEHM 581
Query: 596 EHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLR 637
+ A K+TGMLLE++ E+LH+IE +ALKAKV EA+ VL+
Sbjct: 582 HANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 623
>PAB3_HUMAN (Q9H361) Polyadenylate-binding protein 3
(Poly(A)-binding protein 3) (PABP 3) (Testis-specific
poly(A)-binding protein)
Length = 631
Score = 443 bits (1140), Expect = e-124
Identities = 265/633 (41%), Positives = 378/633 (58%), Gaps = 54/633 (8%)
Query: 29 FVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAAR 88
+ T SLYVGDL +V ++ LY+ F+ G ++S+R+CRDL T S Y YVNF + +DA
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 89 ALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMS 148
ALD +NF + K +R+M+S RDPS RKSG NIF+KNLDK+I++KAL+DT S+FG I+S
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 149 CKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLS-- 206
C + D +G SKGYGFV FE ++A+ AI K+NGML+N ++VFVG F +++R+ L
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 207 KTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAK 266
+F NVY+KN E ++ LK+ FG +G S +M D G+SK FGFV+FE EDA K
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 267 AVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSI 326
AV+ +NGK+++ ++ YVG+AQKK ER+ ELK FEQ +K+ + ++Q +NLY+KNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ-MKQDRITRYQVVNLYVKNLDDGI 305
Query: 327 TDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRALGE 386
DE+L++ FS FGTITS KV G S+G GFV FS+PEEA++A+ E
Sbjct: 306 DDERLRKAFSPFGTITSAKVMM-------------EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 387 MNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ-MRPVAITPSV-APRMPLYPPGTPGLGQ 444
MNG+++ +KPLYVA+AQRKE+R+A L ++ Q M V P+ AP + P
Sbjct: 353 MNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQN 412
Query: 445 QFMYGQGPP---AMMPPQAGFGYQ-------QQLVPGMRPGGGPMP-------SYFVPMV 487
Y PP A + P + Q Q +RPG +P S VP V
Sbjct: 413 HAAY--YPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFSTMRPASSQVPRV 470
Query: 488 QQGQQGQRPGGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQ---DAPVQNIGG 544
Q+ + GP +P + Y+Y G N Q +A Q
Sbjct: 471 MSTQRVANTSTQTVGP--RPAAAAAAAATPAVRTVPRYKYAAGVRNPQQHRNAQPQVTMQ 528
Query: 545 GMMSYDMGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVT 604
+ + G L A+ LA+APP++Q+ MLGE L+PL+ + A K+T
Sbjct: 529 QLAVHVQGQETL-----------TASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKIT 577
Query: 605 GMLLEMDQPEVLHLIESPDALKAKVAEAMEVLR 637
GMLLE+D E+L+++ESP++L++KV EA+ VL+
Sbjct: 578 GMLLEIDNSELLYMLESPESLRSKVDEAVAVLQ 610
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and
nuclear (Poly(A)-binding protein) (PABP) (ARS consensus
binding protein ACBP-67) (Polyadenylate tail-binding
protein)
Length = 576
Score = 418 bits (1075), Expect = e-116
Identities = 257/623 (41%), Positives = 354/623 (56%), Gaps = 99/623 (15%)
Query: 31 TTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAL 90
+ SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF + + +A+
Sbjct: 36 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 95
Query: 91 DVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCK 150
+ LN+TP+ + R+M+S RDPS RK G+ NIFIKNL ID+KAL+DTFS FG I+S K
Sbjct: 96 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 155
Query: 151 IATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTK- 209
IATD +G+SKG+GFV FE E +A+ AID LNGML+N ++++V L +++RD+ L +TK
Sbjct: 156 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 215
Query: 210 -FNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAV 268
+ N+YVKN++ T++ + F +G I SA L +DADG+ K FGFVN+E EDA KAV
Sbjct: 216 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 275
Query: 269 EALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITD 328
EALN +++ E+ YVG+AQKK+ER LK ++E E + K+QG+NL++KNLDDS+ D
Sbjct: 276 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMA-KYQGVNLFVKNLDDSVDD 334
Query: 329 EKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRALGEMN 388
EKL+E F+ +GTITS KV MR NG S+G GFV FSTPEEA++A+ E N
Sbjct: 335 EKLEEEFAPYGTITSAKV------------MRTENGKSKGFGFVCFSTPEEATKAITEKN 382
Query: 389 GKMIVSKPLYVAVAQRKEDRRARLQAQF---SQMRPVAITPSVAPRMPLYPPGTPGLGQQ 445
+++ KPLYVA+AQRK+ RR++L Q +QMR T + A G PG Q
Sbjct: 383 QQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAA----GMPG---Q 435
Query: 446 FMYGQGPP---AMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQRPGGRRGG 502
FM PP +MPP+ P GP P PM + G P R G
Sbjct: 436 FM----PPMFYGVMPPRGV------------PFNGPNPQQMNPMGGMPKNGMPPQFRNGP 479
Query: 503 PGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQDAPVQNIGGGMMSYDMGGLPLRDVVPP 562
VY PP GG P
Sbjct: 480 ---------------------VYGVPP---------------------QGGFPRN----- 492
Query: 563 MPIHALATALANAPPEQQRTMLGEALYPLVDQL--EHDSAAKVTGMLLEMDQPEVLHLIE 620
A ++QR LGE LY V ++A K+TGM+L++ EV L+E
Sbjct: 493 ------ANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLE 546
Query: 621 SPDALKAKVAEAMEVLRNVSQQQ 643
S + + EA + ++Q
Sbjct: 547 SDELFEQHYKEASAAYESFKKEQ 569
Score = 37.4 bits (85), Expect = 0.13
Identities = 27/123 (21%), Positives = 57/123 (45%), Gaps = 17/123 (13%)
Query: 289 KSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCT 348
+ +++Q G Q+V+ S +LY+ +L+ S+++ L ++FS G+++S +VC
Sbjct: 17 QDDQKQAATGSESQSVENS------SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCR 70
Query: 349 MILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDR 408
+ S G +V F+ E +A+ ++N I + + +QR
Sbjct: 71 DAI-----------TKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSL 119
Query: 409 RAR 411
R +
Sbjct: 120 RKK 122
>PABX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein
At2g36660 (Poly(A)-binding protein At2g36660) (PABP)
Length = 609
Score = 375 bits (963), Expect = e-103
Identities = 240/628 (38%), Positives = 349/628 (55%), Gaps = 85/628 (13%)
Query: 30 VTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARA 89
VT SLYVGDL +V + LYD F + + SVR+C+D ++ RSL YGY NF + QDA A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 90 LDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSC 149
++ N + +N K IRVM+S R P +R++G N+F+KNL +++ + L D F FG I+SC
Sbjct: 82 IEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 150 KIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTK 209
K+AT G+S+GYGFVQFE ED+A AI LN ++ DK+++VG F++K DR V + K
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR--VKPEEK 199
Query: 210 FNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVE 269
+ N+Y+KNL +ED L+ +F +G I S + +D + + + FVNF+N EDA +A E
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE 259
Query: 270 ALNGKKVDDEEWYVGKAQKKSEREQELKGRF-EQTVKESVVDKFQGLNLYLKNLDDSITD 328
+NG K + YVG+AQKK+EREQ L+ +F E+ ++ ++ K N+Y+KN++ ++T+
Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVS--NIYVKNVNVAVTE 317
Query: 329 EKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRALGEMN 388
E+L++ FS+ GTITS K +M D G S+G GFV FSTPEEA A+ +
Sbjct: 318 EELRKHFSQCGTITSTK------------LMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 389 GKMIVSKPLYVAVAQRKEDRRARLQAQFS---QMRPVAITPSVAP--RMPLYPPGT-PGL 442
G+M KPLYVA+AQ+KEDR+ +LQ QF + R + + SV P PLY T PG
Sbjct: 366 GQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNTHPG- 424
Query: 443 GQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQRPGGRRGG 502
M Q P M ++ P + + PMV R R G
Sbjct: 425 ----MVYQSYPLMWK-------SANMIGSSYPNSEAVT--YPPMVANAPSKNRQ-NRIGK 470
Query: 503 PGQQPPQQVPMMQQ--QMLPRQRVY----------RYPPGRSNIQDAPVQNIGGGMMSYD 550
+ VP + Q QMLP R + R + +IQ + +G
Sbjct: 471 LDRNAVSYVPNVYQSTQMLPLSRDFSKQQHSRTYGRGKEMKKSIQQRQSETVG------- 523
Query: 551 MGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEM 610
+ +LGE L+PLV++LE A K+TGMLLEM
Sbjct: 524 ----------------------------MEMQLLGELLHPLVEKLEPQLANKITGMLLEM 555
Query: 611 DQPEVLHLIESPDALKAKVAEAMEVLRN 638
D+ E+L L++SP+ L +V EA EVL++
Sbjct: 556 DKSELLLLLKSPEDLAVRVDEAFEVLKS 583
>PAB5_PONPY (P60050) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 382
Score = 310 bits (793), Expect = 1e-83
Identities = 174/390 (44%), Positives = 244/390 (61%), Gaps = 23/390 (5%)
Query: 23 PNVANQ---FVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVN 79
PN A + ++ +LYVGDL+ +V + LY F G + R+CRD TR LGYGYVN
Sbjct: 6 PNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
Query: 80 FTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDT 139
F P DA AL+ +NF +N K R+M+S D RKSG NIFIKNLDK+ID++AL
Sbjct: 66 FRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYL 125
Query: 140 FSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQ 199
FS+FG I+SCK+ D +G SKGY +V F++ +A AI +NG+ +N++QV+VG F +
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 200 DRD---NVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFV 256
+R + F NV+VKN+ + ++ LK F YG S ++RDA G+SK FGFV
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 257 NFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQ-TVKESVVDKFQGL 315
+E E A KAV L+GK +D + YVG+AQKK ER EL+ RFE+ +KE + G+
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK--SRPPGV 302
Query: 316 NLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFS 375
+Y+KNLD++I DEKLKE FS FG+I+ KV + G +G G V FS
Sbjct: 303 PIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-------------GQGKGFGVVCFS 349
Query: 376 TPEEASRALGEMNGKMIVSKPLYVAVAQRK 405
+ EEA++A+ EMNG+++ SKPL+V + Q +
Sbjct: 350 SFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 148 bits (373), Expect = 5e-35
Identities = 102/317 (32%), Positives = 167/317 (52%), Gaps = 30/317 (9%)
Query: 120 ANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSK-GYGFVQFEAEDSAQNAID 178
A +++ +LD + L+ F G + +I D +S GYG+V F A+ A++
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 179 KLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTIT 238
+N LIN K L D+ L K+ N+++KNL +S L F A+G I
Sbjct: 78 TMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNIL 133
Query: 239 SAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKG 298
S ++ D +G SK + +V+F++ A +A+ +NG ++++ + YVG+ + ER E++
Sbjct: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 299 RFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVI 358
R D+ N+++KN+ D I DEKLKE+F E+G S KV
Sbjct: 193 R----------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKV------------ 230
Query: 359 MRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ 418
+RD +G S+G GFV + T E A +A+ +++GK I K LYV AQ+K +R A L+ +F +
Sbjct: 231 IRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFER 290
Query: 419 MRPVAITPSVAPRMPLY 435
+R S P +P+Y
Sbjct: 291 LR--LKEKSRPPGVPIY 305
>PAB5_PANTR (P60049) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 382
Score = 310 bits (793), Expect = 1e-83
Identities = 174/390 (44%), Positives = 244/390 (61%), Gaps = 23/390 (5%)
Query: 23 PNVANQ---FVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVN 79
PN A + ++ +LYVGDL+ +V + LY F G + R+CRD TR LGYGYVN
Sbjct: 6 PNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
Query: 80 FTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDT 139
F P DA AL+ +NF +N K R+M+S D RKSG NIFIKNLDK+ID++AL
Sbjct: 66 FRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYL 125
Query: 140 FSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQ 199
FS+FG I+SCK+ D +G SKGY +V F++ +A AI +NG+ +N++QV+VG F +
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 200 DRD---NVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFV 256
+R + F NV+VKN+ + ++ LK F YG S ++RDA G+SK FGFV
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 257 NFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQ-TVKESVVDKFQGL 315
+E E A KAV L+GK +D + YVG+AQKK ER EL+ RFE+ +KE + G+
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK--SRPPGV 302
Query: 316 NLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFS 375
+Y+KNLD++I DEKLKE FS FG+I+ KV + G +G G V FS
Sbjct: 303 PIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-------------GQGKGFGVVCFS 349
Query: 376 TPEEASRALGEMNGKMIVSKPLYVAVAQRK 405
+ EEA++A+ EMNG+++ SKPL+V + Q +
Sbjct: 350 SFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 148 bits (373), Expect = 5e-35
Identities = 102/317 (32%), Positives = 167/317 (52%), Gaps = 30/317 (9%)
Query: 120 ANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSK-GYGFVQFEAEDSAQNAID 178
A +++ +LD + L+ F G + +I D +S GYG+V F A+ A++
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 179 KLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTIT 238
+N LIN K L D+ L K+ N+++KNL +S L F A+G I
Sbjct: 78 TMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNIL 133
Query: 239 SAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKG 298
S ++ D +G SK + +V+F++ A +A+ +NG ++++ + YVG+ + ER E++
Sbjct: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 299 RFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVI 358
R D+ N+++KN+ D I DEKLKE+F E+G S KV
Sbjct: 193 R----------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKV------------ 230
Query: 359 MRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ 418
+RD +G S+G GFV + T E A +A+ +++GK I K LYV AQ+K +R A L+ +F +
Sbjct: 231 IRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFER 290
Query: 419 MRPVAITPSVAPRMPLY 435
+R S P +P+Y
Sbjct: 291 LR--LKEKSRPPGVPIY 305
>PAB5_MACMU (Q7JGR2) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 382
Score = 310 bits (793), Expect = 1e-83
Identities = 174/390 (44%), Positives = 244/390 (61%), Gaps = 23/390 (5%)
Query: 23 PNVANQ---FVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVN 79
PN A + ++ +LYVGDL+ +V + LY F G + R+CRD TR LGYGYVN
Sbjct: 6 PNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
Query: 80 FTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDT 139
F P DA AL+ +NF +N K R+M+S D RKSG NIFIKNLDK+ID++AL
Sbjct: 66 FRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYL 125
Query: 140 FSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQ 199
FS+FG I+SCK+ D +G SKGY +V F++ +A AI +NG+ +N++QV+VG F +
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 200 DRD---NVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFV 256
+R + F NV+VKN+ + ++ LK F YG S ++RDA G+SK FGFV
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 257 NFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQ-TVKESVVDKFQGL 315
+E E A KAV L+GK +D + YVG+AQKK ER EL+ RFE+ +KE + G+
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK--SRPPGV 302
Query: 316 NLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFS 375
+Y+KNLD++I DEKLKE FS FG+I+ KV + G +G G V FS
Sbjct: 303 PIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-------------GQGKGFGVVCFS 349
Query: 376 TPEEASRALGEMNGKMIVSKPLYVAVAQRK 405
+ EEA++A+ EMNG+++ SKPL+V + Q +
Sbjct: 350 SFEEATKAVDEMNGRVVGSKPLHVTLGQAR 379
Score = 148 bits (373), Expect = 5e-35
Identities = 102/317 (32%), Positives = 167/317 (52%), Gaps = 30/317 (9%)
Query: 120 ANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSK-GYGFVQFEAEDSAQNAID 178
A +++ +LD + L+ F G + +I D +S GYG+V F A+ A++
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 179 KLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTIT 238
+N LIN K L D+ L K+ N+++KNL +S L F A+G I
Sbjct: 78 TMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNIL 133
Query: 239 SAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKG 298
S ++ D +G SK + +V+F++ A +A+ +NG ++++ + YVG+ + ER E++
Sbjct: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 299 RFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVI 358
R D+ N+++KN+ D I DEKLKE+F E+G S KV
Sbjct: 193 R----------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKV------------ 230
Query: 359 MRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ 418
+RD +G S+G GFV + T E A +A+ +++GK I K LYV AQ+K +R A L+ +F +
Sbjct: 231 IRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFER 290
Query: 419 MRPVAITPSVAPRMPLY 435
+R S P +P+Y
Sbjct: 291 LR--LKEKSRPPGVPIY 305
>PAB5_HYLLA (P60048) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 382
Score = 310 bits (793), Expect = 1e-83
Identities = 174/390 (44%), Positives = 244/390 (61%), Gaps = 23/390 (5%)
Query: 23 PNVANQ---FVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVN 79
PN A + ++ +LYVGDL+ +V + LY F G + R+CRD TR LGYGYVN
Sbjct: 6 PNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
Query: 80 FTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDT 139
F P DA AL+ +NF +N K R+M+S D RKSG NIFIKNLDK+ID++AL
Sbjct: 66 FRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYL 125
Query: 140 FSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQ 199
FS+FG I+SCK+ D +G SKGY +V F++ +A AI +NG+ +N++QV+VG F +
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 200 DRD---NVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFV 256
+R + F NV+VKN+ + ++ LK F YG S ++RDA G+SK FGFV
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 257 NFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQ-TVKESVVDKFQGL 315
+E E A KAV L+GK +D + YVG+AQKK ER EL+ RFE+ +KE + G+
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK--SRPPGV 302
Query: 316 NLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFS 375
+Y+KNLD++I DEKLKE FS FG+I+ KV + G +G G V FS
Sbjct: 303 PIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-------------GQGKGFGVVCFS 349
Query: 376 TPEEASRALGEMNGKMIVSKPLYVAVAQRK 405
+ EEA++A+ EMNG+++ SKPL+V + Q +
Sbjct: 350 SFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 148 bits (373), Expect = 5e-35
Identities = 102/317 (32%), Positives = 167/317 (52%), Gaps = 30/317 (9%)
Query: 120 ANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSK-GYGFVQFEAEDSAQNAID 178
A +++ +LD + L+ F G + +I D +S GYG+V F A+ A++
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 179 KLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTIT 238
+N LIN K L D+ L K+ N+++KNL +S L F A+G I
Sbjct: 78 TMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNIL 133
Query: 239 SAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKG 298
S ++ D +G SK + +V+F++ A +A+ +NG ++++ + YVG+ + ER E++
Sbjct: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 299 RFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVI 358
R D+ N+++KN+ D I DEKLKE+F E+G S KV
Sbjct: 193 R----------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKV------------ 230
Query: 359 MRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ 418
+RD +G S+G GFV + T E A +A+ +++GK I K LYV AQ+K +R A L+ +F +
Sbjct: 231 IRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFER 290
Query: 419 MRPVAITPSVAPRMPLY 435
+R S P +P+Y
Sbjct: 291 LR--LKEKSRPPGVPIY 305
>PAB5_HUMAN (Q96DU9) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 382
Score = 310 bits (793), Expect = 1e-83
Identities = 174/390 (44%), Positives = 244/390 (61%), Gaps = 23/390 (5%)
Query: 23 PNVANQ---FVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVN 79
PN A + ++ +LYVGDL+ +V + LY F G + R+CRD TR LGYGYVN
Sbjct: 6 PNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
Query: 80 FTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDT 139
F P DA AL+ +NF +N K R+M+S D RKSG NIFIKNLDK+ID++AL
Sbjct: 66 FRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYL 125
Query: 140 FSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQ 199
FS+FG I+SCK+ D +G SKGY +V F++ +A AI +NG+ +N++QV+VG F +
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 200 DRD---NVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFV 256
+R + F NV+VKN+ + ++ LK F YG S ++RDA G+SK FGFV
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 257 NFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQ-TVKESVVDKFQGL 315
+E E A KAV L+GK +D + YVG+AQKK ER EL+ RFE+ +KE + G+
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK--SRPPGV 302
Query: 316 NLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFS 375
+Y+KNLD++I DEKLKE FS FG+I+ KV + G +G G V FS
Sbjct: 303 PIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-------------GQGKGFGVVCFS 349
Query: 376 TPEEASRALGEMNGKMIVSKPLYVAVAQRK 405
+ EEA++A+ EMNG+++ SKPL+V + Q +
Sbjct: 350 SFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 148 bits (373), Expect = 5e-35
Identities = 102/317 (32%), Positives = 167/317 (52%), Gaps = 30/317 (9%)
Query: 120 ANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSK-GYGFVQFEAEDSAQNAID 178
A +++ +LD + L+ F G + +I D +S GYG+V F A+ A++
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 179 KLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTIT 238
+N LIN K L D+ L K+ N+++KNL +S L F A+G I
Sbjct: 78 TMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNIL 133
Query: 239 SAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKG 298
S ++ D +G SK + +V+F++ A +A+ +NG ++++ + YVG+ + ER E++
Sbjct: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 299 RFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVI 358
R D+ N+++KN+ D I DEKLKE+F E+G S KV
Sbjct: 193 R----------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKV------------ 230
Query: 359 MRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ 418
+RD +G S+G GFV + T E A +A+ +++GK I K LYV AQ+K +R A L+ +F +
Sbjct: 231 IRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFER 290
Query: 419 MRPVAITPSVAPRMPLY 435
+R S P +P+Y
Sbjct: 291 LR--LKEKSRPPGVPIY 305
>PAB5_GORGO (P60047) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 382
Score = 310 bits (793), Expect = 1e-83
Identities = 174/390 (44%), Positives = 244/390 (61%), Gaps = 23/390 (5%)
Query: 23 PNVANQ---FVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVN 79
PN A + ++ +LYVGDL+ +V + LY F G + R+CRD TR LGYGYVN
Sbjct: 6 PNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
Query: 80 FTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDT 139
F P DA AL+ +NF +N K R+M+S D RKSG NIFIKNLDK+ID++AL
Sbjct: 66 FRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYL 125
Query: 140 FSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQ 199
FS+FG I+SCK+ D +G SKGY +V F++ +A AI +NG+ +N++QV+VG F +
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 200 DRD---NVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFV 256
+R + F NV+VKN+ + ++ LK F YG S ++RDA G+SK FGFV
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 257 NFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQ-TVKESVVDKFQGL 315
+E E A KAV L+GK +D + YVG+AQKK ER EL+ RFE+ +KE + G+
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK--SRPPGV 302
Query: 316 NLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFS 375
+Y+KNLD++I DEKLKE FS FG+I+ KV + G +G G V FS
Sbjct: 303 PIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-------------GQGKGFGVVCFS 349
Query: 376 TPEEASRALGEMNGKMIVSKPLYVAVAQRK 405
+ EEA++A+ EMNG+++ SKPL+V + Q +
Sbjct: 350 SFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 148 bits (373), Expect = 5e-35
Identities = 102/317 (32%), Positives = 167/317 (52%), Gaps = 30/317 (9%)
Query: 120 ANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSK-GYGFVQFEAEDSAQNAID 178
A +++ +LD + L+ F G + +I D +S GYG+V F A+ A++
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 179 KLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTIT 238
+N LIN K L D+ L K+ N+++KNL +S L F A+G I
Sbjct: 78 TMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNIL 133
Query: 239 SAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKG 298
S ++ D +G SK + +V+F++ A +A+ +NG ++++ + YVG+ + ER E++
Sbjct: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 299 RFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVI 358
R D+ N+++KN+ D I DEKLKE+F E+G S KV
Sbjct: 193 R----------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKV------------ 230
Query: 359 MRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ 418
+RD +G S+G GFV + T E A +A+ +++GK I K LYV AQ+K +R A L+ +F +
Sbjct: 231 IRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFER 290
Query: 419 MRPVAITPSVAPRMPLY 435
+R S P +P+Y
Sbjct: 291 LR--LKEKSRPPGVPIY 305
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.316 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,985,591
Number of Sequences: 164201
Number of extensions: 3767389
Number of successful extensions: 16903
Number of sequences better than 10.0: 630
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 349
Number of HSP's that attempted gapping in prelim test: 12940
Number of HSP's gapped (non-prelim): 2356
length of query: 659
length of database: 59,974,054
effective HSP length: 117
effective length of query: 542
effective length of database: 40,762,537
effective search space: 22093295054
effective search space used: 22093295054
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)
Medicago: description of AC148486.10