BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148470.10 - phase: 0 /pseudo
         (598 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CCA_METTH (O26684) tRNA nucleotidyltransferase (EC 2.7.7.25) (tR...    33  2.1
ACPB_BACAN (Q9RMX9) Capsule synthesis positive regulator acpB          32  4.7
MSBA_WIGBR (Q8D2U8) Lipid A export ATP-binding/permease protein ...    32  6.2
DTD_XANCP (Q8P4H1) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)          32  6.2

>CCA_METTH (O26684) tRNA nucleotidyltransferase (EC 2.7.7.25) (tRNA
           adenylyltransferase) (tRNA CCA-pyrophosphorylase)
           (CCA-adding enzyme)
          Length = 454

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 20/58 (34%), Positives = 31/58 (52%), Gaps = 1/58 (1%)

Query: 56  VSLLPILEQDDAAMTWAVFRREFLN-RYVPEDVRGQKEIEFLELKQGDMSVTEYAAEF 112
           V  +P    DDA+M  +   R  L+ RY+ E++R ++  + L LKQ   S   Y +EF
Sbjct: 117 VDFVPCYRIDDASMLRSAVDRTILHTRYIQENLRDEQRDDVLLLKQFMKSTGTYGSEF 174


>ACPB_BACAN (Q9RMX9) Capsule synthesis positive regulator acpB
          Length = 482

 Score = 32.0 bits (71), Expect = 4.7
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 80  NRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEFSKSSSLKMV*ELISSGPLVIKR**IFL 139
           ++YV +D+  +KE      K+G++S+ E   +F  S   K+  +LIS    +        
Sbjct: 263 SKYVYKDINKEKEESVQYFKEGNLSIYELVKDFINSLEEKLKVDLISDEEFIF------- 315

Query: 140 IW*AVVGYMKR 150
              A+V Y KR
Sbjct: 316 ---ALVDYFKR 323


>MSBA_WIGBR (Q8D2U8) Lipid A export ATP-binding/permease protein
           msbA
          Length = 581

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 79  LNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEFSKSSSLKMV*ELISSGPLVIKR**IF 138
           +N  V + ++G KEI     ++ ++    Y + F +  S+K+V   ISS  L I    I 
Sbjct: 202 VNFIVEQMLKGHKEIRIFGGQKEEIDRFNYVSNFIRQQSMKIV---ISSSTLDIIIQFIS 258

Query: 139 LIW*AVVGYMKRIPKLI 155
            I  AV+ Y+  +PK+I
Sbjct: 259 SITLAVILYISSLPKII 275


>DTD_XANCP (Q8P4H1) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)
          Length = 146

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 7   PTFKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLL 59
           P+F     P+ A++   ++ +I R      V+  RFG HM+ +  ND  V+ L
Sbjct: 91  PSFSTAAPPEEAERAFNQLVAICREKHSGGVETGRFGAHMVVDLVNDGPVTFL 143


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.370    0.166    0.609 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,412,966
Number of Sequences: 164201
Number of extensions: 1614819
Number of successful extensions: 9188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9186
Number of HSP's gapped (non-prelim): 5
length of query: 598
length of database: 59,974,054
effective HSP length: 116
effective length of query: 482
effective length of database: 40,926,738
effective search space: 19726687716
effective search space used: 19726687716
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 69 (31.2 bits)