BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148406.5 - phase: 0 /pseudo
(363 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FEN1_HUMAN (P39748) Flap endonuclease-1 (EC 3.-.-.-) (Maturation... 388 e-107
FEN1_MOUSE (P39749) Flap endonuclease-1 (EC 3.-.-.-) 380 e-105
RAD2_SCHPO (P39750) DNA repair protein rad2 377 e-104
RA27_YEAST (P26793) Structure specific endonuclease RAD27 353 5e-97
FEN_PYRFU (O93634) Flap structure-specific endonuclease (EC 3.-.... 246 7e-65
FEN_PYRAE (Q8ZYN2) Flap structure-specific endonuclease (EC 3.-.... 245 1e-64
FEN_PYRHO (O50123) Flap structure-specific endonuclease (EC 3.-.... 244 2e-64
FEN_PYRAB (Q9V0P9) Flap structure-specific endonuclease (EC 3.-.... 241 2e-63
FEN_METKA (Q8TXU4) Flap structure-specific endonuclease (EC 3.-.... 236 7e-62
FEN_METJA (Q58839) Flap structure-specific endonuclease (EC 3.-.... 223 5e-58
FEN_SULSO (Q980U8) Flap structure-specific endonuclease (EC 3.-.... 221 2e-57
FEN_SULTO (Q976H6) Flap structure-specific endonuclease (EC 3.-.... 211 2e-54
FEN_METAC (Q8TIY5) Flap structure-specific endonuclease (EC 3.-.... 211 2e-54
FEN_METTH (O27670) Flap structure-specific endonuclease (EC 3.-.... 211 3e-54
FEN_METMA (Q8PYF6) Flap structure-specific endonuclease (EC 3.-.... 210 5e-54
FEN_AERPE (Q9YFY5) Flap structure-specific endonuclease (EC 3.-.... 208 2e-53
FEN_NANEQ (P61942) Flap structure-specific endonuclease (EC 3.-.... 207 3e-53
FEN_ARCFU (O29975) Flap structure-specific endonuclease (EC 3.-.... 207 3e-53
FEN_THEAC (Q9HJD4) Flap structure-specific endonuclease (EC 3.-.... 180 4e-45
FEN_THEVO (Q97B98) Flap structure-specific endonuclease (EC 3.-.... 167 5e-41
>FEN1_HUMAN (P39748) Flap endonuclease-1 (EC 3.-.-.-) (Maturation
factor 1) (MF1)
Length = 380
Score = 388 bits (997), Expect = e-107
Identities = 191/343 (55%), Positives = 257/343 (74%), Gaps = 3/343 (0%)
Query: 1 MKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLE 60
++EN +SYFGRK+A+DASMSIYQFLI V R G ++L NE GE TSHL GMF RTIR++E
Sbjct: 18 IRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGETTSHLMGMFYRTIRMME 76
Query: 61 AGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQ 120
G+KPVYVFDGKPP++K+ EL KR +RAEA L +A A ++++EKF+KR VKVTKQ
Sbjct: 77 NGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQ 136
Query: 121 HNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMD 180
HND+CK LL LMG+P ++APSEAEA CAAL KAGKVYA A+EDMD LTFG+P +RHL
Sbjct: 137 HNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTA 196
Query: 181 PSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSI 240
+KK+P+ EF +++IL+EL L +QF+DLCIL G DYC++IRGIG A+ LI++H SI
Sbjct: 197 SEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSI 256
Query: 241 EKILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFLVNENG 300
E+I+ + +Y VP++W ++EA +LF EPEV D E + LKWS P+EE LI F+ E
Sbjct: 257 EEIVRRLDPNKYPVPENWLHKEAHQLFLEPEV-LDPESVELKWSEPNEEELIKFMCGEKQ 315
Query: 301 FNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKQ 343
F+ +R+ ++++ ++ S+QGRL+ FFK T + S KRK+
Sbjct: 316 FSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLS-SAKRKE 357
>FEN1_MOUSE (P39749) Flap endonuclease-1 (EC 3.-.-.-)
Length = 378
Score = 380 bits (975), Expect = e-105
Identities = 190/343 (55%), Positives = 257/343 (74%), Gaps = 5/343 (1%)
Query: 1 MKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLE 60
++EN +SYFGRK+A+DASMSIYQFLI V R G ++L NE GE TS L GMF RTIR+ E
Sbjct: 18 IRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGETTS-LMGMFYRTIRM-E 74
Query: 61 AGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQ 120
G+KPVYVFDGKPP++K+ EL KR +RAEA L +A EA +E++EKF+KR VKVTKQ
Sbjct: 75 NGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQ 134
Query: 121 HNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMD 180
HND+CK LL LMG+P ++APSEAEA CAAL KAGKVYA A+EDMD LTFG+P +RHL
Sbjct: 135 HNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTA 194
Query: 181 PSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSI 240
+KK+P+ EF ++++L+EL L +QF+DLCIL G DYC++IRGIG A+ LI++H SI
Sbjct: 195 SEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGAKRAVDLIQKHKSI 254
Query: 241 EKILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFLVNENG 300
E+I+ + +Y VP++W ++EA++LF EPEV D E + LKWS P+EE L+ F+ E
Sbjct: 255 EEIVRRLDPSKYPVPENWLHKEAQQLFLEPEV-VDPESVELKWSEPNEEELVKFMCGEKQ 313
Query: 301 FNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKQ 343
F+ +R+ ++++ ++ S+QGRL+ FFK T + S KRK+
Sbjct: 314 FSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLS-SAKRKE 355
>RAD2_SCHPO (P39750) DNA repair protein rad2
Length = 380
Score = 377 bits (968), Expect = e-104
Identities = 178/343 (51%), Positives = 246/343 (70%), Gaps = 2/343 (0%)
Query: 1 MKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLE 60
+K N ++YFGRK+A+DASMS+YQFLI V + L NE GE TSHL GMF RT+R+++
Sbjct: 18 VKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGETTSHLMGMFYRTLRIVD 77
Query: 61 AGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQ 120
G+KP +VFDGKPP +K+ EL KR+++ +A E E E +++F+KRTVKVT+Q
Sbjct: 78 NGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGTAEMVDRFAKRTVKVTRQ 137
Query: 121 HNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMD 180
HND+ KRLL LMG+P V AP EAEAQCAAL ++GKVYA ASEDMD+L F AP LRHL
Sbjct: 138 HNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRHLTF 197
Query: 181 PSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSI 240
+K P+ E+++ K L LD++++QF+DLCIL GCDYC+ IRG+G A++LIRQ+G++
Sbjct: 198 SEQRKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDYCEPIRGVGPARAVELIRQYGTL 257
Query: 241 EKILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFLVNENG 300
++ ++ + +Y +P+DWPY++ARRLF + EV +E+ LKW PD +G+I FLV E G
Sbjct: 258 DRFVKEADRSKYPIPEDWPYEDARRLFLDAEVLPGEEI-ELKWKSPDADGIIQFLVKEKG 316
Query: 301 FNSDRVTKAIEKIKAAKNKSSQGRLESFFKPT-ANPSVPIKRK 342
FN DRV I +++ A QGRL+SFFKP ++P P+ K
Sbjct: 317 FNEDRVKLGINRLEKASKTIPQGRLDSFFKPVPSSPKKPVDTK 359
>RA27_YEAST (P26793) Structure specific endonuclease RAD27
Length = 382
Score = 353 bits (905), Expect = 5e-97
Identities = 178/349 (51%), Positives = 245/349 (70%), Gaps = 14/349 (4%)
Query: 1 MKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLE 60
++++ +S+FGRK+A+DASMS+YQFLI V + LTNEAGE TSHL GMF RT+R+++
Sbjct: 18 IRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYRTLRMID 77
Query: 61 AGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQ 120
G+KP YVFDGKPP++K+ EL KR S+R E L EA K K +R VKV+K+
Sbjct: 78 NGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELEKM---KQERRLVKVSKE 134
Query: 121 HNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMD 180
HN++ ++LL LMG+P + AP+EAEAQCA L K GKVYA ASEDMD+L + P LRHL
Sbjct: 135 HNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTF 194
Query: 181 PSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSI 240
+KK P+ E D +L LDLT++QF+DLCI+ GCDYC++IRG+G +TALKLI+ HGSI
Sbjct: 195 SEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLIKTHGSI 254
Query: 241 EKILENI-----SKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFL 295
EKI+E I + ++++P+DWPY++AR LF +PEV +E+ NLKWSPP E+ LI +L
Sbjct: 255 EKIVEFIESGESNNTKWKIPEDWPYKQARMLFLDPEVIDGNEI-NLKWSPPKEKELIEYL 313
Query: 296 VNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKQL 344
++ F+ +RV I ++K QGRL+ FF+ VP ++QL
Sbjct: 314 CDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQ-----VVPKTKEQL 357
>FEN_PYRFU (O93634) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 340
Score = 246 bits (628), Expect = 7e-65
Identities = 141/342 (41%), Positives = 201/342 (58%), Gaps = 27/342 (7%)
Query: 2 KENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEA 61
KE + E+ +G+KIA+DA +IYQFL + + L + G +TSHL G+F RTI L+EA
Sbjct: 12 KEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEA 71
Query: 62 GMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQH 121
G+KPVYVFDG+PPE K +EL+KR R EA EALE E+ K+++R +V +
Sbjct: 72 GIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEML 131
Query: 122 NDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDP 181
+D K+LL LMG+P+V+APSE EAQ A + G VYA AS+D DSL FGAP+ +R+L
Sbjct: 132 IEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTIT 191
Query: 182 SSKKIPVMEFDV---------AKILEELDLTMDQFIDLCILSGCDY-CDNIRGIGGMTAL 231
+K+P V ++L+EL LT ++ I+L IL G DY I+GIG AL
Sbjct: 192 GKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKAL 251
Query: 232 KLIRQHGSIEKILENISKE---RYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDE 288
+++R SK+ ++Q D + F P V+ + NL W PDE
Sbjct: 252 EIVRH-----------SKDPLAKFQKQSDVDLYAIKEFFLNPPVTDN---YNLVWRDPDE 297
Query: 289 EGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 330
EG++ FL +E+ F+ +RV +E++K A Q LES+FK
Sbjct: 298 EGILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWFK 339
>FEN_PYRAE (Q8ZYN2) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 346
Score = 245 bits (625), Expect = 1e-64
Identities = 142/337 (42%), Positives = 203/337 (60%), Gaps = 15/337 (4%)
Query: 2 KENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEA 61
+E K ES G+ IA+DA ++YQFL + + L + AG +TSHL G+F RTI LLEA
Sbjct: 16 REVKLESLSGKCIALDAYNALYQFLASIRQPDGTPLMDRAGRITSHLSGLFYRTINLLEA 75
Query: 62 GMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQH 121
G++PVYVFDGKPPE K E+++R R +A + A++ +ED+ K++KR V +T +
Sbjct: 76 GIRPVYVFDGKPPEFKLAEIEERRKTREKAMEEVLRAIKEGRREDVAKYAKRAVFITSEM 135
Query: 122 NDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDP 181
D+ KRLL MGVP V+APSE EAQ A + + G +AV S+D DSL FG+PK +R+L
Sbjct: 136 VDEAKRLLSYMGVPWVQAPSEGEAQAAYMARKGHCWAVGSQDYDSLLFGSPKLVRNLAVS 195
Query: 182 SSKKIPVMEFDVAKILEELDLTM--------DQFIDLCILSGCDY-CDNIRGIGGMTALK 232
+KI ++ + ELD + +Q IDL IL G DY D + G+G ALK
Sbjct: 196 PKRKIGEEVIELTPEIIELDAVLRALRLKNREQLIDLAILLGTDYNPDGVPGVGPQKALK 255
Query: 233 LIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLI 292
LI + GS+EK+LE + K Y D E ++ F P V TD ++ PDE L
Sbjct: 256 LIWEFGSLEKLLETVLKGAYFPIDP---LEIKKFFLNPPV-TDQYATEVR--DPDEAALK 309
Query: 293 TFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 329
FL+ E+ F+ +RV+KA+E+++ A+ K L+SFF
Sbjct: 310 DFLIREHDFSEERVSKALERLRKARGKLKTSSLDSFF 346
>FEN_PYRHO (O50123) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 343
Score = 244 bits (623), Expect = 2e-64
Identities = 136/338 (40%), Positives = 197/338 (58%), Gaps = 21/338 (6%)
Query: 2 KENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEA 61
KE E+ +G+KIA+DA +IYQFL + + L + G +TSHL G+F RTI L+EA
Sbjct: 12 KEIDLENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEA 71
Query: 62 GMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQH 121
G+KP YVFDGKPPE K +EL+KR R EA EAL N E+ K+++R KV +
Sbjct: 72 GIKPAYVFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQRATKVNEML 131
Query: 122 NDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDP 181
+D K+LL+LMG+P+++APSE EAQ A + G VYA AS+D DSL FGAP+ +R+L
Sbjct: 132 IEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLTIT 191
Query: 182 SSKKIPVMEFDVA---------KILEELDLTMDQFIDLCILSGCDY-CDNIRGIGGMTAL 231
+K+P + V ++L+EL +T ++ I+L IL G DY ++GIG AL
Sbjct: 192 GKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKKAL 251
Query: 232 KLIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGL 291
+++R ++Q D + F P V+ + +L W PDEEG+
Sbjct: 252 EIVR--------YSRDPLAKFQRQSDVDLYAIKEFFLNPPVTNE---YSLSWKEPDEEGI 300
Query: 292 ITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 329
+ FL +E+ F+ +RV IE++K A Q LES+F
Sbjct: 301 LKFLCDEHNFSEERVKNGIERLKKAIKAGRQSTLESWF 338
>FEN_PYRAB (Q9V0P9) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 343
Score = 241 bits (616), Expect = 2e-63
Identities = 140/341 (41%), Positives = 202/341 (59%), Gaps = 27/341 (7%)
Query: 2 KENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEA 61
KE + E+ +G+KIA+DA +IYQFL + + L + G +TSHL G+F RTI L+EA
Sbjct: 12 KEIELENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEA 71
Query: 62 GMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQH 121
G+KPVYVFDGKPP K +EL+KR R EA EAL + E+ K+++R KV +
Sbjct: 72 GIKPVYVFDGKPPAFKKKELEKRREAREEAEIKWKEALAKGDIEEARKYAQRATKVNEML 131
Query: 122 NDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDP 181
+D K+LL+LMG+P+V+APSE EAQ A + G VYA AS+D DSL FG P+ +R+L
Sbjct: 132 IEDAKKLLQLMGIPIVQAPSEGEAQAAYMAGKGDVYASASQDYDSLLFGTPRLVRNLTIT 191
Query: 182 SSKKIPVMEFDV---------AKILEELDLTMDQFIDLCILSGCDY-CDNIRGIGGMTAL 231
+K+P + V ++L+EL +T ++ I+L IL G DY I+GIG AL
Sbjct: 192 GKRKMPGKDIYVEIKPELIVLEEVLKELKITREKLIELAILVGTDYNPGGIKGIGPKKAL 251
Query: 232 KLIRQHGSIEKILENISKE---RYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDE 288
++++ SK+ ++Q D + F P +TDD +LKW PDE
Sbjct: 252 EIVK-----------YSKDPLAKFQRQSDVDLYAIKEFFLNPP-TTDD--YSLKWKEPDE 297
Query: 289 EGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 329
EG+I FL +E+ F+ +RV +E++K A Q LES+F
Sbjct: 298 EGIIRFLCDEHDFSEERVKNGLERLKKAIKAGKQSTLESWF 338
>FEN_METKA (Q8TXU4) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 348
Score = 236 bits (602), Expect = 7e-62
Identities = 137/352 (38%), Positives = 213/352 (59%), Gaps = 40/352 (11%)
Query: 2 KENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEA 61
+E + GR+IA+DA ++YQFL + + G ++ + G +TSHL G+ RT+ L+E
Sbjct: 13 EETDLRALAGREIAIDAFNALYQFLTTIMKDGRPLMDSR-GRITSHLNGLLYRTVNLVEE 71
Query: 62 GMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQH 121
G+KPVYVFDG+PP++K + L++R ++ EA L A KE+ EK++++ ++ +
Sbjct: 72 GIKPVYVFDGEPPDLKRETLERRRERKEEAMEKLRRA---KTKEEREKYARQVARLDESL 128
Query: 122 NDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDP 181
+D KRLL LMG+P V+APSE EAQCA + + G V+A S+D DSL FG+P+ +R++
Sbjct: 129 VEDAKRLLDLMGIPWVQAPSEGEAQCAYMARCGDVWATGSQDYDSLLFGSPRLVRNITIV 188
Query: 182 SSKKIP----VME-----FDVAKILEELDL-TMDQFIDLCILSGCDY-CDNIRGIGGMTA 230
+K P ++E + +L++L L + +Q +DL IL G DY D + GIG A
Sbjct: 189 GKRKHPHTGEIIEVKPEIMRLEDVLDQLGLESREQLVDLAILLGTDYNPDGVPGIGPKRA 248
Query: 231 LKLIRQHGSIEKILENISKERYQVPDDWPY---------QEARRLFKEPEVSTDDEVLNL 281
L+LIR++GS++++ + D WP ++ RRLF EPEV+ D E L
Sbjct: 249 LQLIRKYGSLDELKDT---------DIWPKIERHLPVEPEKLRRLFLEPEVTDDYE---L 296
Query: 282 KWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQG----RLESFF 329
W PDEEGL+ FLV E F+ DRV +A+E++K A + +G L++FF
Sbjct: 297 DWDEPDEEGLVEFLVEERDFSEDRVRRAVERLKEALQELRKGGRQETLDAFF 348
>FEN_METJA (Q58839) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 326
Score = 223 bits (569), Expect = 5e-58
Identities = 127/327 (38%), Positives = 206/327 (62%), Gaps = 18/327 (5%)
Query: 6 FESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEAGMKP 65
FE G+K+A+D ++YQFL + L N GE+TS G+F +TI LLE + P
Sbjct: 16 FEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITP 75
Query: 66 VYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDC 125
++VFDG+PP++K + K R + +A + EA++ ++ E+ K++KR +T + ++C
Sbjct: 76 IWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENC 135
Query: 126 KRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKK 185
K LL LMG+P VEAPSE EAQ + + K G V+AV S+D D+L +GAP+ +R+L ++K+
Sbjct: 136 KYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNL--TTTKE 193
Query: 186 IPVMEFDVAKILEELDLTMDQFIDLCILSGCDY-CDNIRGIGGMTALKLIRQHGSIEKIL 244
+P + ++ ++LE+L +++D ID+ I G DY ++GIG A +L+R +
Sbjct: 194 MPEL-IELNEVLEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVR-----SGVA 247
Query: 245 ENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFLVNENGFNSD 304
+++ K+ + Y E +R+FKEP+V TD+ L+LK PD+EG+I FLV+EN FN D
Sbjct: 248 KDVLKKEVEY-----YDEIKRIFKEPKV-TDNYSLSLKL--PDKEGIIKFLVDENDFNYD 299
Query: 305 RVTKAIEKI-KAAKNKSSQGRLESFFK 330
RV K ++K+ NK+ Q L+++FK
Sbjct: 300 RVKKHVDKLYNLIANKTKQKTLDAWFK 326
>FEN_SULSO (Q980U8) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 349
Score = 221 bits (563), Expect = 2e-57
Identities = 132/344 (38%), Positives = 202/344 (58%), Gaps = 22/344 (6%)
Query: 2 KENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEA 61
+E F G+++++D ++YQFL + + L + G VTSHL G+F RTI +LE
Sbjct: 12 RELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEE 71
Query: 62 GMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQH 121
G+ P+YVFDGKPPE K++EL++R + EA L A E++ K+S+ ++++
Sbjct: 72 GVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIM 131
Query: 122 NDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDP 181
++ K+LLR MG+P+V+APSE EA+ A L K G +A AS+D D++ FGA + +R+L
Sbjct: 132 VEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTIT 191
Query: 182 SSKKIPVME---------FDVAKILEELDLTMDQFIDLCILSGCDY-CDNIRGIGGMTAL 231
+K+P + + +L++L +T +Q ID+ IL G DY D IRGIG AL
Sbjct: 192 GKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERAL 251
Query: 232 KLIRQHGSIEKILE--NISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEE 289
K+I+++G IEK +E ISK+ D E R LF P+V +E L+L + P+ E
Sbjct: 252 KIIKKYGKIEKAMEYGEISKKDINFNID----EIRGLFLNPQVVKPEEALDL--NEPNGE 305
Query: 290 GLITFLVNENGFNSDRVTKAIEK----IKAAKNKSSQGRLESFF 329
+I LV E+ F+ +RV IE+ IK AK S Q L+ +F
Sbjct: 306 DIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLDRWF 349
>FEN_SULTO (Q976H6) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 351
Score = 211 bits (538), Expect = 2e-54
Identities = 126/344 (36%), Positives = 203/344 (58%), Gaps = 20/344 (5%)
Query: 2 KENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEA 61
KE F G+KI++DA ++YQFL + + L + G VTSHL G+F RTI +LE
Sbjct: 12 KELSFAELKGKKISIDAYNALYQFLAAIRQPDGTPLMDSQGRVTSHLNGLFYRTISILEE 71
Query: 62 GMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADN--KEDIEKFSKRTVKVTK 119
G+ P+YVFDGKPPE K QEL++R + EA L +A + +++K+++ ++++T
Sbjct: 72 GIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIKTSELKKYAQMSIRLTN 131
Query: 120 QHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLM 179
+ ++ K LL+ MG+PVV+APSE EA+ A + G +A AS+D DSL FGA + +R+L
Sbjct: 132 EMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLIRNLT 191
Query: 180 DPSSKKIPVME---------FDVAKILEELDLTMDQFIDLCILSGCDY-CDNIRGIGGMT 229
+K+P + ++ +L++L LT +Q ID+ I+ G DY D I+G G T
Sbjct: 192 LSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKT 251
Query: 230 ALKLIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEE 289
A ++I+++GS+EK +E + +V ++ +E R LF +P+V E NL+ D
Sbjct: 252 AYRIIKKYGSLEKAIEKGEIPKIKV--NFNVEEIRSLFLKPQVVEPKE--NLELVDCDSN 307
Query: 290 GLITFLVNENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 329
++ LV + FN +RV IE+++ AK + S Q L+ +F
Sbjct: 308 KILDILVKTHDFNEERVKNGIERLEKAKREAKGASRQTGLDQWF 351
>FEN_METAC (Q8TIY5) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 338
Score = 211 bits (538), Expect = 2e-54
Identities = 124/327 (37%), Positives = 187/327 (56%), Gaps = 19/327 (5%)
Query: 12 RKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEAGMKPVYVFDG 71
R +AVDA +++QFL ++ + L N G+VTSHL G+ RT L+EAG+KPV++FDG
Sbjct: 22 RVVAVDAFNTLHQFLSIIRQRDGSPLVNSRGKVTSHLSGLLYRTASLVEAGIKPVFIFDG 81
Query: 72 KPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRL 131
KPP++K++ L +R R + A + E K+++ + +V ++ +D K LL +
Sbjct: 82 KPPDLKSETLSRRKEVRETSLEKWENAKAEGDLEAAYKYAQASSRVDQEIVEDSKYLLGI 141
Query: 132 MGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIP---- 187
MG+P ++AP E EAQ A + VAS+D DS FGAPK +R++ +K+P
Sbjct: 142 MGIPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSFLFGAPKVVRNMAVTGKRKLPGKNV 201
Query: 188 --VMEFDVAKI---LEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEK 242
+E +V ++ L L++ DQ ID+ I G DY + +G TALKLI++HG I
Sbjct: 202 YVDVELEVIELEETLRALEINRDQLIDIAICVGTDYNKGLEKVGPKTALKLIKKHGDIHA 261
Query: 243 ILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFLVNENGFN 302
+L E + R+LF PEV+ D E+ KW+ PD E LI FL EN F+
Sbjct: 262 VLREKDMEIEGL------DRIRKLFTHPEVTEDYEI---KWTKPDSEKLIKFLCEENDFS 312
Query: 303 SDRVTKAIEKIKAAKNKSSQGRLESFF 329
+DRV KA E++KAA + Q L+ +F
Sbjct: 313 TDRVEKAAERLKAASG-ARQKTLDQWF 338
>FEN_METTH (O27670) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 328
Score = 211 bits (536), Expect = 3e-54
Identities = 118/325 (36%), Positives = 190/325 (58%), Gaps = 11/325 (3%)
Query: 5 KFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEAGMK 64
+ E GR +AVDA+ ++YQFL + + L + G VTSHL G+ RT ++E ++
Sbjct: 15 RLEDLRGRTVAVDAANTLYQFLSSIRQRDGTPLMDSRGRVTSHLSGILYRTAAVMEREIR 74
Query: 65 PVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDD 124
+YVFDG+ +K + + +R R ++ ALE + + +K++ R+ +++ + +
Sbjct: 75 VIYVFDGRSHHLKGETVSRRADIRKKSEVEWKRALEEGDIDRAKKYAVRSSRMSSEILES 134
Query: 125 CKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSK 184
KRLL L+G+P V+AP E EAQ + + K G +AVAS+D D L FGAP+ +R+L
Sbjct: 135 SKRLLELLGIPYVQAPGEGEAQASYMVKMGDAWAVASQDYDCLLFGAPRVVRNLTLSGKL 194
Query: 185 KIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKIL 244
+ P + ++ L EL ++ Q +D+ +L G D+ + ++GIG LKLIR+ G I K++
Sbjct: 195 EDPEI-IELESTLRELSISHTQLVDMALLVGTDFNEGVKGIGARRGLKLIREKGDIFKVI 253
Query: 245 ENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFLVNENGFNSD 304
++ + P Q RR+F EPEVS D E+ +W PD EG+I FL E+GF+ D
Sbjct: 254 RDLEADIGGDP-----QVLRRIFLEPEVSEDYEI---RWRKPDVEGVIEFLCTEHGFSED 305
Query: 305 RVTKAIEKIKAAKNKSSQGRLESFF 329
RV A++K + A S+Q LE +F
Sbjct: 306 RVRAALKKFEGA--SSTQKSLEDWF 328
>FEN_METMA (Q8PYF6) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 338
Score = 210 bits (534), Expect = 5e-54
Identities = 121/320 (37%), Positives = 175/320 (53%), Gaps = 18/320 (5%)
Query: 12 RKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEAGMKPVYVFDG 71
R +AVDA +++QFL ++ + L N G+VTSHL G+ RT L+EAG+KPV+VFDG
Sbjct: 22 RVVAVDAFNTLHQFLSIIRQRDGSPLVNSQGKVTSHLSGLLYRTASLVEAGIKPVFVFDG 81
Query: 72 KPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRL 131
KPPEMK L +R R + A N E K+++ + KV + +D K LL +
Sbjct: 82 KPPEMKTGTLNRRKEIRESSKEKWENAKAEGNLEAAYKYAQASSKVDQDIIEDSKYLLDI 141
Query: 132 MGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIP---- 187
MG+P ++AP E EAQ A + VAS+D DS FGAP +R+L +K+P
Sbjct: 142 MGIPWIQAPCEGEAQAAHMVLKKDADCVASQDYDSFLFGAPTVVRNLAATGKRKLPGKNV 201
Query: 188 -----VMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEK 242
+ ++ + L+ L + DQ ID+ I G DY + +G TALKLI++HG+I
Sbjct: 202 YVDVELEMIELEETLDSLGINRDQLIDIAICVGTDYNKGLEKVGPKTALKLIKKHGNIHA 261
Query: 243 ILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFLVNENGFN 302
++ E + + LF P+V+ D E+ KW PD E LI FL +EN F+
Sbjct: 262 VIREKGMEIEAL------DSIKELFTHPDVTDDYEI---KWGKPDSEKLINFLCDENDFS 312
Query: 303 SDRVTKAIEKIKAAKNKSSQ 322
DRV KA +++KAA Q
Sbjct: 313 EDRVVKAADRLKAASGARQQ 332
>FEN_AERPE (Q9YFY5) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 351
Score = 208 bits (529), Expect = 2e-53
Identities = 122/341 (35%), Positives = 196/341 (56%), Gaps = 19/341 (5%)
Query: 2 KENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEA 61
+E + + G +A+DA +YQFL + + L + G VTSHL G+F RTI L+E
Sbjct: 16 REVELRALSGYVLALDAYNMLYQFLTAIRQPDGTPLLDREGRVTSHLSGLFYRTINLVEE 75
Query: 62 GMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQH 121
G+KPVYVFDGKPPEMK++E+++RL ++AEA A A+EA E+ K++ ++T
Sbjct: 76 GIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAGEVEEARKYAMMAARLTSDM 135
Query: 122 NDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDP 181
++ K LL MG+P V+AP+E EAQ A + + G +A S+D DSL FG+P+ +R+L
Sbjct: 136 VEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAIT 195
Query: 182 SSKKIPVME---------FDVAKILEELDLTMDQFIDLCILSGCDY-CDNIRGIGGMTAL 231
+K+P + ++ +L +L +T +Q I + IL G DY +RG G TAL
Sbjct: 196 GRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLGTDYNPGGVRGYGPKTAL 255
Query: 232 KLIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGL 291
+L++ G K+L ++ + Y PD ++ F P V+ D +++ PD++ +
Sbjct: 256 RLVKSLGDPMKVLASVPRGEYD-PD--YLRKVYEYFLNPPVTDD---YKIEFRKPDQDKV 309
Query: 292 ITFLVNENGFNSDRVTKAIEKIKAA---KNKSSQGRLESFF 329
LV + FN +RV +A+E++ A K + Q RL+ +F
Sbjct: 310 REILVERHDFNPERVERALERLGKAYREKLRGRQSRLDMWF 350
>FEN_NANEQ (P61942) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 339
Score = 207 bits (527), Expect = 3e-53
Identities = 121/337 (35%), Positives = 191/337 (55%), Gaps = 22/337 (6%)
Query: 2 KENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEA 61
KE +F+ FG+ IA+DA ++YQFL + + G E L + G +TSHL G+F RTI LLE
Sbjct: 14 KEIEFKQLFGKVIAIDAFNALYQFLFSIRQDG-EPLRDSKGRITSHLSGLFYRTINLLEY 72
Query: 62 GMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQH 121
G+KP+YVFDG PP+ K +KR + + + EAL+ N ++ K++K K+
Sbjct: 73 GIKPIYVFDGTPPKFKIVAWEKRKKHKEQLESKYKEALKKGNIQEAIKYAKSLGKLDSYM 132
Query: 122 NDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDP 181
++ K+LL MG+P V+APSE EA+ A L K G S+D DSL FG+P+ +R++
Sbjct: 133 VEEAKKLLEAMGIPYVQAPSEGEAEAAYLTKKGVSDYCGSQDYDSLLFGSPRVVRNITIS 192
Query: 182 SSKKIPVME---------FDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALK 232
+K+P ++ +L +T +Q I + +L G DY + + GIG TA++
Sbjct: 193 EKRKLPGKNIYVEVKPEVIELEAVLNYWKITREQLIAIAMLLGTDYNEKVPGIGPKTAIE 252
Query: 233 LIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLI 292
++++ G K++ E Y++P+ +E F P V + KW P++E +
Sbjct: 253 IVKRFGDPIKVI-----EYYKIPNG---KEIFEFFLNPPVIDFEP----KWGKPNKELIF 300
Query: 293 TFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 329
LV E+ FN +RV +AIE+++ A NK +Q L SFF
Sbjct: 301 KILVEEHDFNPERVERAIERLEKALNKINQKTLFSFF 337
>FEN_ARCFU (O29975) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 336
Score = 207 bits (527), Expect = 3e-53
Identities = 125/337 (37%), Positives = 189/337 (55%), Gaps = 21/337 (6%)
Query: 2 KENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEA 61
+E + E + G+KIAVDA ++YQF+ ++ + L + G +TSHL G+ R ++E
Sbjct: 12 EEVELEYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEV 71
Query: 62 GMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQH 121
G++PV+VFDG+PPE K E+++R +RAEA AL+A +K D +K+++ +V +
Sbjct: 72 GIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDK-DAKKYAQAAGRVDEYI 130
Query: 122 NDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDP 181
D K LL MG+P V+APSE EAQ A + G V S+D DSL FG+P+ R+L
Sbjct: 131 VDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAIT 190
Query: 182 SSKKIPVMEFDV---------AKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALK 232
+K+P V L+ L LT +Q ID+ IL G DY + ++G+G AL
Sbjct: 191 GKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKALN 250
Query: 233 LIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLI 292
I+ +G I + L+ + V +E R F P V+ D +++ PD E I
Sbjct: 251 YIKTYGDIFRALKALKVNIDHV------EEIRNFFLNPPVTDD---YRIEFREPDFEKAI 301
Query: 293 TFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 329
FL E+ F+ +RV KA+EK+KA KS+Q LE +F
Sbjct: 302 EFLCEEHDFSRERVEKALEKLKAL--KSTQATLERWF 336
>FEN_THEAC (Q9HJD4) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 336
Score = 180 bits (457), Expect = 4e-45
Identities = 118/335 (35%), Positives = 178/335 (52%), Gaps = 21/335 (6%)
Query: 3 ENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEAG 62
E + + ++D +YQ L V + L + G VTSHL G+F RTI LLE
Sbjct: 13 ETSLKDQGNQTFSIDTYNILYQLLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLLENR 72
Query: 63 MKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHN 122
++PVYVFDGKP +KN+ + +R + +A A L EA+E +ED+ ++ R +T Q
Sbjct: 73 IRPVYVFDGKPSPLKNRTISERQMMKEKAKAELEEAIER-GEEDLRQYYSRINYITPQIV 131
Query: 123 DDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPS 182
DD K+LL MG+P V+APSE EAQ + + K V V S+D D L FGA K LR+
Sbjct: 132 DDTKKLLDYMGIPYVDAPSEGEAQASYMTKK-NVDGVISQDYDCLLFGARKILRNFAIYG 190
Query: 183 SKKIP--------VMEFDVA-KILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKL 233
+K+P E+ + ++L + DQ I + IL G D+ + I+GIG AL L
Sbjct: 191 RRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKALAL 250
Query: 234 IRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLIT 293
I++ G I+ +L++I K + E FK P V D K+ PD + +
Sbjct: 251 IKKEGDIKSVLKHIGKNIENL------DEIIDFFKNPPVVDYD----FKFRKPDTDAIEH 300
Query: 294 FLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 328
FL +E+ F+ +R+ +E ++ S+Q RL+SF
Sbjct: 301 FLCDEHDFSRERIRDHLESLRKNDQASTQFRLDSF 335
>FEN_THEVO (Q97B98) Flap structure-specific endonuclease (EC
3.-.-.-)
Length = 335
Score = 167 bits (422), Expect = 5e-41
Identities = 111/323 (34%), Positives = 172/323 (52%), Gaps = 21/323 (6%)
Query: 15 AVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEAGMKPVYVFDGKPP 74
A+D +YQ L V + L + +G VTSHL G+F RT+ L+E G+KP++VFDGKP
Sbjct: 25 AIDTYNILYQLLSNVRQYDGTPLMDSSGNVTSHLYGIFYRTVNLVENGIKPIFVFDGKPS 84
Query: 75 EMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGV 134
+KN+ L+ R + +A A L EA+ + +E+++++ R +T Q +D K LL MG+
Sbjct: 85 PLKNRTLEIRQLAKEKAKAELEEAI-SRGEENLKQYYSRINYITPQIVNDTKELLTYMGI 143
Query: 135 PVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVME---- 190
P V+APSE EAQ + + + V S+D D L FGA K LR+ +K+P
Sbjct: 144 PYVDAPSEGEAQASYMTRK-DADGVISQDYDCLLFGAKKILRNFAIYGRRKVPRKNVYRT 202
Query: 191 -----FDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILE 245
+ ++L++ + DQ I++ IL G D+ + I+GIG AL LI++ G+I+ +L
Sbjct: 203 VYPEYVMLDEVLKKNGINQDQLIEIGILVGTDFNEGIKGIGAKKALALIKKEGNIKAVLN 262
Query: 246 NISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFLVNENGFNSDR 305
I K + E FK P V + + PD + + FL + F+ DR
Sbjct: 263 KIGKNIENL------DEIIDFFKNPPVVD----VKYVFGKPDPKKIEEFLCVVHDFSRDR 312
Query: 306 VTKAIEKIKAAKNKSSQGRLESF 328
+ + I NKS Q RL+SF
Sbjct: 313 ILEHINTYVKYYNKSVQFRLDSF 335
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.135 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,042,980
Number of Sequences: 164201
Number of extensions: 1759763
Number of successful extensions: 5691
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 5544
Number of HSP's gapped (non-prelim): 98
length of query: 363
length of database: 59,974,054
effective HSP length: 111
effective length of query: 252
effective length of database: 41,747,743
effective search space: 10520431236
effective search space used: 10520431236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Medicago: description of AC148406.5