BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148405.1 + phase: 0 
         (149 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SYC_LACPL (Q88YX9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst...    30  2.5
DR29_ARATH (Q9SZA7) Probable disease resistance protein At4g33300      30  2.5
VNCA_RSVT (Q00844) Major noncapsid protein (NCP) (20.5 kDa prote...    29  3.3
VNCA_RSVM (Q01209) Major noncapsid protein (NCP) (20.5 kDa prote...    29  4.3
R23A_MOUSE (P54726) UV excision repair protein RAD23 homolog A (...    29  4.3
R23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A (...    29  4.3
YAUG_SCHPO (Q10169) Hypothetical protein C26A3.16 in chromosome I      28  5.7
Y4WI_RHISN (P55687) Hypothetical 59.0 kDa protein y4wI                 28  5.7
RS4_HALN1 (Q9HQJ6) 30S ribosomal protein S4P                           28  9.7
R231_ARATH (Q84L33) Putative DNA repair protein RAD23-1 (RAD23-l...    28  9.7

>SYC_LACPL (Q88YX9) Cysteinyl-tRNA synthetase (EC 6.1.1.16)
           (Cysteine--tRNA ligase) (CysRS)
          Length = 470

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 76  KPEKISWPLVWGQFCLCYEGQKLVTETDYLRD-YGIKDGDQ-LRFIRHVSNVCNFQRKPK 133
           KP +ISW   WG     +  +  V  T YL D + I  G Q L F  H + +   + K  
Sbjct: 191 KPGEISWESPWGAGRPGWHIECSVMSTKYLGDTFDIHGGGQDLEFPHHENEIAQSEAKTG 250

Query: 134 KRTVNLKQHGRY 145
           K   N   H  +
Sbjct: 251 KTFANYWLHNGF 262


>DR29_ARATH (Q9SZA7) Probable disease resistance protein At4g33300
          Length = 855

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 32/111 (28%), Positives = 47/111 (41%), Gaps = 10/111 (9%)

Query: 25  IVDCTLPYD---KLPSQNLTLTVLKLDS-SSFQVEVAKTATVAVLKQAVEAAFRHKPEKI 80
           + DC  P+D   KL   +   T   LD  +SF+     T  V+  K   E  F +  E +
Sbjct: 265 VPDCNFPFDGARKLVILDDVWTTQALDRLTSFKFPGCTTLVVSRSK-LTEPKFTYDVEVL 323

Query: 81  SWPLVWGQFCLCYEGQKLVTE---TDYLRDYGIKDGDQLRF--IRHVSNVC 126
           S       FCLC  GQK +      D ++ + I+    LR   +  V+N C
Sbjct: 324 SEDEAISLFCLCAFGQKSIPLGFCKDLVKQHNIQSFSILRVLCLAQVANEC 374


>VNCA_RSVT (Q00844) Major noncapsid protein (NCP) (20.5 kDa
          protein) (Protein S) (Stripe disease-specific protein)
          Length = 178

 Score = 29.3 bits (64), Expect = 3.3
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 13 RRSLSIQLSSMIIVDCTLPYDKLP---SQNLTLTVLKLDSSSFQVEVAKTATVAVLKQAV 69
          +R++ + +  ++ +D TL YD LP   S N+TL  LK         V +     +LK  V
Sbjct: 5  QRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPE-----RVTEDTKKLILKGCV 59

Query: 70 EAAFRHKPE 78
            A+ H  E
Sbjct: 60 YIAYHHPLE 68


>VNCA_RSVM (Q01209) Major noncapsid protein (NCP) (20.5 kDa
          protein) (Protein S) (Stripe disease-specific protein)
          Length = 178

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 13 RRSLSIQLSSMIIVDCTLPYDKLP---SQNLTLTVLKLDSSSFQVEVAKTATVAVLKQAV 69
          +R++ + +  ++ +D TL YD LP   S N+TL  LK         V +     +LK  V
Sbjct: 5  QRTVEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPE-----RVTEDTKKLILKGCV 59

Query: 70 EAAFRHKPE 78
            A+ H  E
Sbjct: 60 YIAYHHPLE 68


>R23A_MOUSE (P54726) UV excision repair protein RAD23 homolog A
           (mHR23A)
          Length = 363

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 40  LTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEKISWPLVWGQFCLCYEGQKLV 99
           +T+T+  L   +F++ +    TV VLK+ +EA    +  + ++P V GQ  L Y G K++
Sbjct: 3   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEA----EKGRDAFP-VAGQ-KLIYAG-KIL 55

Query: 100 TETDYLRDYGIKD 112
           ++   +RDY I +
Sbjct: 56  SDDVPIRDYHIDE 68


>R23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A
           (hHR23A)
          Length = 363

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 40  LTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEKISWPLVWGQFCLCYEGQKLV 99
           +T+T+  L   +F++ +    TV VLK+ +EA    +  + ++P V GQ  L Y G K++
Sbjct: 3   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEA----EKGRDAFP-VAGQ-KLIYAG-KIL 55

Query: 100 TETDYLRDYGIKD 112
           ++   +RDY I +
Sbjct: 56  SDDVPIRDYRIDE 68


>YAUG_SCHPO (Q10169) Hypothetical protein C26A3.16 in chromosome I
          Length = 354

 Score = 28.5 bits (62), Expect = 5.7
 Identities = 20/82 (24%), Positives = 38/82 (45%), Gaps = 10/82 (12%)

Query: 39  NLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEKISWPLVWGQFCLCYEGQKL 98
           N++LT+   +   + V V   ++V  LK+A+      + E+           L Y G+ L
Sbjct: 3   NISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQR---------LIYAGRVL 53

Query: 99  VTETDYLRDYGIKDGDQLRFIR 120
             E + L+ Y I+DG  +  ++
Sbjct: 54  KDE-ESLKTYKIQDGHSIHLVK 74


>Y4WI_RHISN (P55687) Hypothetical 59.0 kDa protein y4wI
          Length = 513

 Score = 28.5 bits (62), Expect = 5.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 7/39 (17%)

Query: 73  FRHKPEKISWPL--VWGQFCLCYEGQKLVTETDYLRDYG 109
           +R+KPE   WPL  +W ++      + ++   D LRD+G
Sbjct: 103 YRYKPESAPWPLSIMWDEYM-----RDMLRHRDLLRDHG 136


>RS4_HALN1 (Q9HQJ6) 30S ribosomal protein S4P
          Length = 170

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 12/42 (28%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 93  YEGQKLVTETDYLRDYGIKDGDQLRFIRHVSNVCNFQRKPKK 134
           Y+G+++  E+D L  YG+K+ ++L   R  S + +++R+ ++
Sbjct: 18  YQGERIAEESDLLSRYGLKNKEEL--WRAQSELRDYRREARR 57


>R231_ARATH (Q84L33) Putative DNA repair protein RAD23-1 (RAD23-like
           protein 1) (AtRAD23-1)
          Length = 371

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 40  LTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEKISWPLVWGQFCLCYEGQKLV 99
           + LTV  L  S F++ V  + T+  +K+ +E        K ++P   GQ  L + G+ L 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIE----DSQGKDNYPC--GQQLLIHNGKVLK 54

Query: 100 TETDYLRDYGIKDG 113
            ET  + +   ++G
Sbjct: 55  DETSLVENKVTEEG 68


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,429,950
Number of Sequences: 164201
Number of extensions: 543462
Number of successful extensions: 1290
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1290
Number of HSP's gapped (non-prelim): 10
length of query: 149
length of database: 59,974,054
effective HSP length: 100
effective length of query: 49
effective length of database: 43,553,954
effective search space: 2134143746
effective search space used: 2134143746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)