BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148396.11 + phase: 0 
         (745 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab pol...    34  1.6
YSW1_YEAST (P38280) Spore-specific protein YSW1                        33  2.1
ENGC_PASMU (Q9CMD1) Probable GTPase engC (EC 3.6.1.-)                  33  2.7
WR51_ARATH (Q93WU9) Probable WRKY transcription factor 51 (WRKY ...    32  6.1
RF1_UREPA (Q9PRE0) Peptide chain release factor 1 (RF-1)               32  6.1
LUXS_STRPY (Q99YL7) S-ribosylhomocysteinase (EC 3.13.1.-) (Autoi...    32  6.1

>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab
            polyprotein) [Includes: Replicase polyprotein 1a (pp1a)
            (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.24.-)
            (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide
            HD2 (p44); 3C-like proteinase (
          Length = 7059

 Score = 33.9 bits (76), Expect = 1.6
 Identities = 28/114 (24%), Positives = 54/114 (46%), Gaps = 10/114 (8%)

Query: 517  ELWSACVDCGIEGTKEEGENLSFSILDNAVRKHREVVYCLSNNIAHCSCKMFESEGIPCR 576
            +L S C    +EGTK+  E LSF++  + V +       LSN++A  S      + +  R
Sbjct: 1425 DLISKCQITAVEGTKKLAERLSFNVGRSIVYETDANKLILSNDVAFVSTFNVLQDVLSLR 1484

Query: 577  HILFI------LKGKGFSEIPSHY-IVNRWTKLATSKPI--FDCDGNVLEACSK 621
            H + +              +P  + +VN++ ++   +P+  F+C G + + CS+
Sbjct: 1485 HDIALDDDARTFVQSNVDVVPEGWRVVNKFYQINGVRPVKYFECPGGI-DICSQ 1537


>YSW1_YEAST (P38280) Spore-specific protein YSW1
          Length = 609

 Score = 33.5 bits (75), Expect = 2.1
 Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 39/257 (15%)

Query: 476 HKELFADNNTLHSNPELNMHMNLEKHAREVYTHENFYIFQKELWSACVDCGIEGTKEEGE 535
           +K +F   NT  S P + +  +  K  R V  + N     K+L  A ++  I+ T    +
Sbjct: 233 YKFVFQTPNTFTSQPNITVENDFHKGGRHVIDYLN-----KKL--ATMNIDIDLTSGGKQ 285

Query: 536 NLSFSILDNAVRKHREVVYCLSNNIA----HCSCKMFESEGIPCRHI-LFILKGKGFSEI 590
           N+S+    + +  H  V+  ++N+I+    H   K  E E +   ++ L  LK +     
Sbjct: 286 NVSWEEELDQLSDH--VIESITNHISKGRMHAQEKQDELEKLKLENLNLSTLKQE----- 338

Query: 591 PSHYIVNRWTKLATSKPIFDCDGNVLEACSKFESESTLVSKTWSQLLKCMHMAGTNKEKL 650
                      L   + I     N LE+ SK  ++  L      ++ K    +  NK   
Sbjct: 339 ----------NLQHKQEINSLKDN-LESISKKNNDLIL------EMNKLKKKSTNNKTNE 381

Query: 651 LLIYDEGCSIELKMSKMKTDVVSRPLDELEAFIGSNVAKTIEVLPPEPSNTKGCGKRIKG 710
            +  DE  + E+  S M   ++   ++E    +  +  K  + LP E  N +   K ++ 
Sbjct: 382 YISTDENENEEITKSNMGPGILELNVNETSKKLQQSTFKPSKYLPRETRNNENRLKHLEK 441

Query: 711 ---GKEKAMEQQQKRTR 724
              G EK++E+++K+ R
Sbjct: 442 RIFGLEKSLEKKKKQVR 458


>ENGC_PASMU (Q9CMD1) Probable GTPase engC (EC 3.6.1.-)
          Length = 350

 Score = 33.1 bits (74), Expect = 2.7
 Identities = 19/66 (28%), Positives = 37/66 (55%), Gaps = 1/66 (1%)

Query: 620 SKFESESTLVSKTWSQLLKCMHMAGTNKEKLLLIYDEGCSIELKMSKM-KTDVVSRPLDE 678
           ++ E++  +  +   Q L    ++G N EKL  ++DEG SI +  S + K+ +++  L E
Sbjct: 173 AEVEAQLRIYQQIGYQTLMISALSGENMEKLTALFDEGTSIFVGQSGVGKSSLINHILPE 232

Query: 679 LEAFIG 684
           + A +G
Sbjct: 233 VNAQVG 238


>WR51_ARATH (Q93WU9) Probable WRKY transcription factor 51 (WRKY
           DNA-binding protein 51)
          Length = 194

 Score = 32.0 bits (71), Expect = 6.1
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 18/99 (18%)

Query: 51  DFYKAYAYVAGFSVRNSIKTKDKDGVKWKYFLCSKEGFKEEKKVDKPQLLIAENSLSKSR 110
           D  K   +   F  R+ I   D DG KW+     K G K  K           N+++K  
Sbjct: 89  DQTKETGHRVAFRTRSKIDVMD-DGFKWR-----KYGKKSVK-----------NNINKRN 131

Query: 111 KRKLTREGCKARLVLKRTIDGKYEVSNFYEG-HSHGLVS 148
             K + EGC  +  ++R  D    V   YEG H+H  +S
Sbjct: 132 YYKCSSEGCSVKKRVERDGDDAAYVITTYEGVHNHESLS 170


>RF1_UREPA (Q9PRE0) Peptide chain release factor 1 (RF-1)
          Length = 359

 Score = 32.0 bits (71), Expect = 6.1
 Identities = 32/116 (27%), Positives = 48/116 (40%), Gaps = 12/116 (10%)

Query: 5   DNEVDFSSPSKDGNDPKNTSVEWIPAC-EDELKPVIGKVFDTLVEGGDFYKAYAYVAGFS 63
           +N++       D ND KN  VE  PA   DE    +G +FDT       Y+AYA    + 
Sbjct: 96  ENDLKIMLLPTDPNDDKNVIVEMRPAAGGDESSIFVGNLFDT-------YRAYAENNNWK 148

Query: 64  VRNSIKTKDKDGVKWKYFLCSKE----GFKEEKKVDKPQLLIAENSLSKSRKRKLT 115
           ++    T +  G  +  F+ S E      K E  V + Q + A  S  +     +T
Sbjct: 149 MKIIEMTPNAVGFSFISFMISGEEVYSRMKFESGVHRVQRVPATESKGRVHTSTIT 204


>LUXS_STRPY (Q99YL7) S-ribosylhomocysteinase (EC 3.13.1.-)
           (Autoinducer-2 production protein luxS) (AI-2 synthesis
           protein)
          Length = 160

 Score = 32.0 bits (71), Expect = 6.1
 Identities = 17/57 (29%), Positives = 28/57 (48%)

Query: 581 ILKGKGFSEIPSHYIVNRWTKLATSKPIFDCDGNVLEACSKFESESTLVSKTWSQLL 637
           I+ GK  S   +  I +   ++AT     D  G  LE+C  ++  S   +K W+QL+
Sbjct: 89  IMWGKHSSTDIAKVIKSSLEEIATGITWEDVPGTTLESCGNYKDHSLFAAKEWAQLI 145


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,504,965
Number of Sequences: 164201
Number of extensions: 4005970
Number of successful extensions: 9355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9350
Number of HSP's gapped (non-prelim): 7
length of query: 745
length of database: 59,974,054
effective HSP length: 118
effective length of query: 627
effective length of database: 40,598,336
effective search space: 25455156672
effective search space used: 25455156672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)