BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148395.6 - phase: 0
(1336 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 353 2e-96
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 341 7e-93
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 199 5e-50
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 159 6e-38
YMT5_YEAST (Q04214) Transposon Ty1 protein B 137 3e-31
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 136 3e-31
YMU0_YEAST (Q04670) Transposon Ty1 protein B 134 1e-30
YMD9_YEAST (Q03434) Transposon Ty1 protein B 134 1e-30
YJZ7_YEAST (P47098) Transposon Ty1 protein B 134 2e-30
YJZ9_YEAST (P47100) Transposon Ty1 protein B 133 4e-30
YME4_YEAST (Q04711) Transposon Ty1 protein B 132 8e-30
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 131 1e-29
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 103 2e-21
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 91 2e-17
M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300... 46 6e-04
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 41 0.025
MUTL_CLOPE (Q8XL86) DNA mismatch repair protein mutL 37 0.28
YL78_YEAST (Q05854) Putative transcriptional regulatory protein ... 37 0.36
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 37 0.47
PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV) 36 0.62
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 353 bits (906), Expect = 2e-96
Identities = 219/624 (35%), Positives = 334/624 (53%), Gaps = 48/624 (7%)
Query: 707 NHPIIPATEQTSSNSELPLENQSETNKEPAMHIDNNTHIQDPTQ-IEHEPQQLNTRKSTR 765
N IP+T +++E + SE ++P I+ + + + +EH Q + R
Sbjct: 726 NFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLR 785
Query: 766 VSQKPNHLSDYVCNSSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEPISY 825
S++P S YP Y + I+D EP S
Sbjct: 786 RSERPRVESRR-----------------YPSTEY--------------VLISDDREPESL 814
Query: 826 KEA---SQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERY 882
KE +++ +KAM E+ +L N T+ V+ P +P+ KWV+K+K D + RY
Sbjct: 815 KEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRY 874
Query: 883 KARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSE 942
KARLV KG+ Q +GIDF + FSPV K+T++R +++LA+ + QLDV AFLHGDL E
Sbjct: 875 KARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEE 934
Query: 943 NVYMSVPQGVH-SPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFI 1001
+YM P+G + K + VCKL KSLYGLKQA R+WY K F+ Q Y ++ SD ++
Sbjct: 935 EIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYF 994
Query: 1002 LH-SDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKL 1060
S+ F LL+YVDD+++ G I ++K L F +KDLG + LG+++ +
Sbjct: 995 KRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERT 1054
Query: 1061 G--ISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDD------ILSYRRL 1112
+ + Q KY +L+ + AKPV+TPL +KL + P + + Y
Sbjct: 1055 SRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSA 1114
Query: 1113 VGKLLY-LTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQL 1171
VG L+Y + TRPDIA V +S+FL P H++ +++YL+GT G L F +
Sbjct: 1115 VGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI 1174
Query: 1172 QLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCE 1231
L G+TDAD AG D+R+S++GY F ISW++K Q VA S++EAEY A + E
Sbjct: 1175 -LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKE 1233
Query: 1232 LQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIF 1291
+ WL L++L + K V++CD+QSAI ++ N ++H RTKH+++ H++RE +
Sbjct: 1234 MIWLKRFLQELGLH-QKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESL 1292
Query: 1292 KLLPIKSQSQLADFFTKPLPPKNF 1315
K+L I + AD TK +P F
Sbjct: 1293 KVLKISTNENPADMLTKVVPRNKF 1316
Score = 116 bits (290), Expect = 5e-25
Identities = 139/661 (21%), Positives = 253/661 (38%), Gaps = 114/661 (17%)
Query: 50 SNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAWNRCNMLVHSWIMNSVEDSIA 109
+ + +W R MR L + +D P + W + S I + D +
Sbjct: 15 NGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKA--EDWADLDERAASAIRLHLSDDVV 72
Query: 110 QSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQDSRSVTEFFTALKVLWEELE 169
+I+ + A +W L+ + L+ ++++L T F + L V
Sbjct: 73 NNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEG--TNFLSHLNVF----- 125
Query: 170 AYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLNDSFDLVRSQILLMNPLPTIN 229
+ + + K + E ++I L L S+D + + IL +
Sbjct: 126 -----------NGLITQLANLGVKIEEE-DKAILLLNSLPSSYDNLATTILHGKTTIELK 173
Query: 230 KIFSMVMQHERQFKISIPVEDSTILVNSAGKSQGRGRGN-GNSNSNGK---------RSC 279
+ S ++ +E+ K + ++ G+S R N G S + GK R+C
Sbjct: 174 DVTSALLLNEKMRK-KPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNC 232
Query: 280 SFCGRDGHTIDICYR-KHGFPPNYGNKNFAKVNNSSIEQNEEREDLDDSKSCKGNSNTEP 338
C + GH C + G G KN DD+ + +N
Sbjct: 233 YNCNQPGHFKRDCPNPRKGKGETSGQKN------------------DDNTAAMVQNNDNV 274
Query: 339 SFGITKEQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGA 398
I +E+ ++ +S+ W+VD+ A
Sbjct: 275 VLFINEEEECMHLSGPESE----------------------------------WVVDTAA 300
Query: 399 SDHICSSIKFFDSYAPIIPVHIKLPNGNMAIAKFSGT------VNFSPGLIARNVLYVAE 452
S H F Y +K+ GN + +K +G N L+ ++V +V +
Sbjct: 301 SHHATPVRDLFCRYVAGDFGTVKM--GNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPD 358
Query: 453 FKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFN 512
++NL+S L D + F K L +G + G + +
Sbjct: 359 LRMNLISGIALDRDGY-------ESYFANQK--------WRLTKGSLVIAKGVARGTLYR 403
Query: 513 HQPVIALSQSSSSTTFLPQEALWHFRLGHLSND--RLLRMQQHFPCIKVDSNSVCDICHY 570
I + +++ + + LWH R+GH+S ++L + K + CD C +
Sbjct: 404 TNAEICQGELNAAQDEISVD-LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLF 462
Query: 571 SRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTK 630
+ ++ F+ S + + +L++ D+ GP+ S+ G+KYF+T +DD SR W+ + KTK
Sbjct: 463 GKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTK 522
Query: 631 SEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLMPDF---YSSKGIEHQTSCVETPQQN 687
+V + Q F +E + K+K +R+DNG E+ +F SS GI H+ + TPQ N
Sbjct: 523 DQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHN 582
Query: 688 G 688
G
Sbjct: 583 G 583
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 341 bits (875), Expect = 7e-93
Identities = 196/532 (36%), Positives = 303/532 (56%), Gaps = 10/532 (1%)
Query: 800 HSLNNISASHQKFALAITDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPN 859
+SLN + + + ++ + I Y++ + W +A+N+EL+A N TW P N
Sbjct: 874 NSLNKVVLNAHTIFNDVPNSFDEIQYRD--DKSSWEEAINTELNAHKINNTWTITKRPEN 931
Query: 860 IKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALA 919
+ S+WV+ +K+ G RYKARLVA+G+TQ ID+ +TF+PVA+I++ R +++L
Sbjct: 932 KNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLV 991
Query: 920 SINSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYE 979
+ +HQ+DV AFL+G L E +YM +PQG+ S + VCKL K++YGLKQA+R W+E
Sbjct: 992 IQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI-SCNSDNVCKLNKAIYGLKQAARCWFE 1050
Query: 980 KLTGFLLLQGYKQSASDHSLFILHSDTCFTAL--LVYVDDVILAGNSMTEIDRIKAVLDV 1037
L + S+ D ++IL + L+YVDDV++A MT ++ K L
Sbjct: 1051 VFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLME 1110
Query: 1038 EFKIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQ 1097
+F++ DL ++K+F+GI + + I + Q Y +L + V+TPL I
Sbjct: 1111 KFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYEL 1170
Query: 1098 DNSPPHDDILSYRRLVGKLLY-LTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLK 1156
NS D R L+G L+Y + TRPD+ V LS++ + + RV++YLK
Sbjct: 1171 LNS-DEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLK 1229
Query: 1157 GTPGQGLLFRRDSQLQ--LLGFTDADWAGCPDSRRSTSGYCF-FLGSSLISWRAKKQHTV 1213
GT L+F+++ + ++G+ D+DWAG R+ST+GY F +LI W K+Q++V
Sbjct: 1230 GTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSV 1289
Query: 1214 ARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTK 1273
A SS+EAEY AL A E WL +LL + +K ++ DNQ I IA NP H+R K
Sbjct: 1290 AASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAK 1349
Query: 1274 HLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNFHSFLPKLNMI 1325
H++I HF RE++Q N+ L I +++QLAD FTKPLP F KL ++
Sbjct: 1350 HIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLL 1401
Score = 105 bits (263), Expect = 6e-22
Identities = 109/433 (25%), Positives = 173/433 (39%), Gaps = 90/433 (20%)
Query: 272 NSNGKRSCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVNNSSIEQNEEREDLDDSKSCK 331
NS K C CGR+GH C+ ++ ++ N+ ++NE+
Sbjct: 225 NSKYKVKCHHCGREGHIKKDCF------------HYKRILNNKNKENEK----------- 261
Query: 332 GNSNTEPSFGITKEQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRTSYTMNHSSFGT 391
Q Q A+S H + + TS M++ F
Sbjct: 262 -----------------------QVQTATS------HGIAFMVKEVNNTS-VMDNCGF-- 289
Query: 392 WIVDSGASDHICSSIKFF-DSYAPIIPVHIKLPN-GNMAIAKFSGTVNFSPG--LIARNV 447
++DSGASDH+ + + DS + P+ I + G A G V + +V
Sbjct: 290 -VLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDV 348
Query: 448 LYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQV 507
L+ E NL+SV +L + + FD I + + G L
Sbjct: 349 LFCKEAAGNLMSVKRL-QEAGMSIEFDKSGVTISKNGLMVVKNSGML------------- 394
Query: 508 FSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHLSNDRLLRMQQH--FPCIKVDSN--- 562
N+ PVI S + LWH R GH+S+ +LL +++ F + +N
Sbjct: 395 ----NNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLEL 450
Query: 563 --SVCDICHYSRHKKLPFKLSMNKASHCYEL--IHFDIWGPISTHSIHGHKYFITALDDY 618
+C+ C + +LPFK +K L +H D+ GPI+ ++ YF+ +D +
Sbjct: 451 SCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQF 510
Query: 619 SRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL---MPDFYSSKGIE 675
+ + L K KS+V Q+F+ E FN KV + DNG E+L M F KGI
Sbjct: 511 THYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGIS 570
Query: 676 HQTSCVETPQQNG 688
+ + TPQ NG
Sbjct: 571 YHLTVPHTPQLNG 583
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 199 bits (505), Expect = 5e-50
Identities = 99/225 (44%), Positives = 149/225 (66%), Gaps = 3/225 (1%)
Query: 1011 LLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYC 1070
LL+YVDD++L G+S T ++ + L F +KDLG + YFLGI++ G+ + Q KY
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 1071 LDLLKDTGLLGAKPVTTPLDPSIKLHQD-NSPPHDDILSYRRLVGKLLYLTTTRPDIAFV 1129
+L + G+L KP++TPL +KL+ ++ + D +R +VG L YLT TRPDI++
Sbjct: 63 EQILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120
Query: 1130 VQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRR 1189
V + Q ++ PT+ +D RV++Y+KGT GL ++S+L + F D+DWAGC +RR
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRR 180
Query: 1190 STSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQW 1234
ST+G+C FLG ++ISW AK+Q TV+RSS+E EYRAL+ + EL W
Sbjct: 181 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 159 bits (401), Expect = 6e-38
Identities = 104/308 (33%), Positives = 159/308 (50%), Gaps = 4/308 (1%)
Query: 929 LDVNNAFLHGDLSENVYMSVPQG-VHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLL 987
+DV+ AFL+ + E +Y+ P G V+ P+ V +L +YGLKQA W E + L
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 988 QGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKL 1047
G+ + +H L+ + + VYVDD+++A S DR+K L + +KDLGK+
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1048 KYFLGIEVAHSKLG-ISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDI 1106
FLG+ + S G I++ + Y ++ + K TPL S L + SP DI
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 1107 LSYRRLVGKLLYLTTT-RPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLF 1165
Y+ +VG+LL+ T RPDI++ V LS+FL P H ++A RV++YL T L +
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240
Query: 1166 RRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKK-QHTVARSSSEAEYRA 1224
R SQ+ L + DA D ST GY L + ++W +KK + + S+EAEY
Sbjct: 241 RSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300
Query: 1225 LSFASCEL 1232
S E+
Sbjct: 301 ASETVMEI 308
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 137 bits (344), Expect = 3e-31
Identities = 159/644 (24%), Positives = 286/644 (43%), Gaps = 71/644 (11%)
Query: 709 PIIPATEQTSSNSELPLENQSETNKEPAMHIDNNTHIQDPTQIEHEPQQLNTRKSTRVSQ 768
P P TE + S ELP N +TN D+N + T S + S
Sbjct: 710 PPEPPTELSDSFKELPPINSRQTNSSLGGIGDSNAY--------------TTINSKKRSL 755
Query: 769 KPNHLSDYVCNSSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAIT-DASEPISY-K 826
+ N V + ++ S K H + + A + T E I+Y K
Sbjct: 756 EDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNK 815
Query: 827 EASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWV----YKIKHKSDGTIERY 882
+ +++ +++A + E++ L KTW D + K I K V + K DGT +
Sbjct: 816 DIKEKEKYIEAYHKEVNQLLKMKTWD-TDKYYDRKEIDPKRVINSMFIFNRKRDGT---H 871
Query: 883 KARLVAKGYTQVEGIDFFDTFSPVAKITTVR-----ILIALASINSWHLHQLDVNNAFLH 937
KAR VA+G I DT+ + TV ++LA N++++ QLD+++A+L+
Sbjct: 872 KARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLY 926
Query: 938 GDLSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDH 997
D+ E +Y+ P H +++ +L KSLYGLKQ+ WYE + +L+ Q +
Sbjct: 927 ADIKEELYIRPPP--HLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGW 984
Query: 998 SLFILHSDTCFTALLVYVDDVILAGNSMTEIDRI--KAVLDVEFKIKDLG----KLKY-F 1050
S +S + ++VDD++L ++ RI K + + KI +LG +++Y
Sbjct: 985 SCVFENSQ---VTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDI 1041
Query: 1051 LGIEVAHS-----KLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDD 1105
LG+E+ + KLG+ + L G K ++ P P + + Q +D
Sbjct: 1042 LGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRK-LSAPGQPGLYIDQQELELEED 1100
Query: 1106 -----ILSYRRLVGKLLYL-TTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTP 1159
+ ++L+G Y+ R D+ + + L+Q + P+ D +++++ T
Sbjct: 1101 DYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTR 1160
Query: 1160 GQGLLFRRDSQL----QLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVAR 1215
+ L++ + + +L+ +DA + P +S G + L +I ++ K
Sbjct: 1161 DKQLIWHKSKPVKPTNKLVVISDASYGNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCT 1219
Query: 1216 SSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPV---LFCDNQSAIH-IAGNPVFHER 1271
S++EAE A+S + L L YL+++L +K P+ L D++S I I N R
Sbjct: 1220 STTEAEIHAISESVPLLNNLSYLIQEL----DKKPITKGLLTDSKSTISIIISNNEEKFR 1275
Query: 1272 TKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNF 1315
+ +R+++ N + I+++ +AD TKPLP K F
Sbjct: 1276 NRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
Score = 43.5 bits (101), Expect = 0.004
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 565 CDICHYSRHKKLP-FKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTW 623
C I ++H+ + +L + ++ +H DI+GP+ YFI+ D+ ++F W
Sbjct: 213 CLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRW 272
Query: 624 IMLCKTKSE--VSKSVQNFILNIENQFNCKVKTVRTDNGPEF---LMPDFYSSKGIEHQT 678
+ + E + + I+NQF V ++ D G E+ + F GI T
Sbjct: 273 VYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGI---T 329
Query: 679 SCVET 683
C T
Sbjct: 330 PCYTT 334
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 136 bits (343), Expect = 3e-31
Identities = 156/678 (23%), Positives = 289/678 (42%), Gaps = 72/678 (10%)
Query: 695 NSNQYFQWQYHSNHP-----IIPATEQTSSNSELPLENQSETNKEPAMHI--DNNTHIQ- 746
++N+ +++ ++HP I+ ++QT S N + K ++ DN T++
Sbjct: 1133 STNKVEKFEKENHHPPPIEDIVDMSDQTDMESNCQDGNNLKELKVTDKNVPTDNGTNVSP 1192
Query: 747 ----------DPTQ-------IEHEPQQLNTRKSTRVSQKPNHLSDYVCNSSSDSTKQAS 789
P Q + E LN ++ + K N L+ Y +K+
Sbjct: 1193 RLEQNIEASGSPVQTVNKSAFLNKEFSSLNMKRKRKRHDKNNSLTSYELERDKKRSKKNR 1252
Query: 790 SGILYPIKHYHSLNNISASHQKFALAIT-DASEPISYKEASQQDCWVKAMNSELSALNHN 848
++ S I A + A++ D E YK+A ++ ++ + +
Sbjct: 1253 VKLIPDNMETVSAPKIRAIYYNEAISKNPDLKEKHEYKQAYHKEL---QNLKDMKVFDVD 1309
Query: 849 KTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAK 908
+ + P N+ + + ++ K YKAR+V +G TQ DT+S +
Sbjct: 1310 VKYSRSEIPDNLI-VPTNTIFTKKRNGI-----YKARIVCRGDTQSP-----DTYSVITT 1358
Query: 909 ITT----VRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHSPKPNQVCKLL 964
+ ++I + +A+ + + LD+N+AFL+ L E +Y+ P V KL
Sbjct: 1359 ESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHPHDRRC-----VVKLN 1413
Query: 965 KSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNS 1024
K+LYGLKQ+ ++W + L +L G K ++ L+ A VYVDD ++A ++
Sbjct: 1414 KALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLYQTEDKNLMIA--VYVDDCVIAASN 1471
Query: 1025 MTEIDRIKAVLDVEFKIKDLGKL------KYFLGIEVAHSK-LG---------ISICQRK 1068
+D L F++K G L LG+++ ++K LG I+ +K
Sbjct: 1472 EQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKK 1531
Query: 1069 YCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPP-HDDILSYRRLVGKLLYLT-TTRPDI 1126
Y +L K T +DP + Q + +L ++L+G+L Y+ R DI
Sbjct: 1532 YNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLKLQQLLGELNYVRHKCRYDI 1591
Query: 1127 AFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRD--SQLQLLGFTDADWAGC 1184
F V+++++ +N P + ++++YL G+ + RD +++ TDA G
Sbjct: 1592 EFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDAS-VGS 1650
Query: 1185 PDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRV 1244
+S G + G ++ + + K SS+EAE A+ + + L LK+L
Sbjct: 1651 EYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGE 1710
Query: 1245 KCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLAD 1304
N V+ D++ AI + K I ++EK+++ KLL I + +AD
Sbjct: 1711 GDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIAD 1770
Query: 1305 FFTKPLPPKNFHSFLPKL 1322
TKP+ +F F+ L
Sbjct: 1771 LLTKPVSASDFKRFIQVL 1788
Score = 58.2 bits (139), Expect = 2e-07
Identities = 50/225 (22%), Positives = 99/225 (43%), Gaps = 29/225 (12%)
Query: 493 ELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALW----HFRLGHLSNDRLL 548
+++ G+ + + + + + A+ +SS L + ++ H R+GH ++
Sbjct: 515 KIVNGVIHVKMNELIERPSDDSKINAIKPTSSPGFKLNKRSITLEDAHKRMGHTGIQQIE 574
Query: 549 RMQQH------FPCIKVDSNSVCDICHYSRH-KKLPFKLSMNKASHCYELIH---FDIWG 598
+H IK + C C S+ K+ + SMN S +E DI+G
Sbjct: 575 NSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTDHEPGSSWCMDIFG 634
Query: 599 PISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNI-------ENQFNCK 651
P+S+ + +Y + +D+ +R+ C T + +K+ + + + E QF+ K
Sbjct: 635 PVSSSNADTKRYMLIMVDNNTRY-----CMTSTHFNKNAETILAQVRKNIQYVETQFDRK 689
Query: 652 VKTVRTDNGPEFL---MPDFYSSKGIEHQTSCVETPQQNGRVLPY 693
V+ + +D G EF + +++ SKGI H + + NGR Y
Sbjct: 690 VREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERY 734
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 134 bits (338), Expect = 1e-30
Identities = 171/721 (23%), Positives = 319/721 (43%), Gaps = 88/721 (12%)
Query: 662 EFLMPDFYSSKGIEHQTSCVE-TPQQNGRVLPYSNSNQYFQWQYHSNHPIIPAT--EQTS 718
+F D YS H + T N + +P + + + H + P I A+ E S
Sbjct: 620 DFRHSDSYSENETNHTNVPISSTGGTNNKTVPQISDQETEKRIIHRS-PSIDASPPENNS 678
Query: 719 SNSELPLENQ---SETNKEPAMHID---NNTHIQDPTQIEHEPQQLNTRKSTRVSQKPNH 772
S++ +P++ SE N E ++ D + + PT+ ++L S + +
Sbjct: 679 SHNIVPIKTPTTVSEQNTEESIIADLPLPDLPPESPTEFPDPFKELPPINSRQTNSSLGG 738
Query: 773 LSDYVCNSSSDSTKQAS---------SGILYPIKHYHSLNNISASHQKFALAITDA---- 819
+ D ++ +S K++ S + K+ SL + + +A A
Sbjct: 739 IGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSI 798
Query: 820 ---------SEPISY-KEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWV- 868
E I+Y K+ +++ +++A + E++ L KTW D + K I K V
Sbjct: 799 KPIRTTLRYDEAITYNKDIKEKEKYIQAYHKEVNQLLKMKTWD-TDRYYDRKEIDPKRVI 857
Query: 869 ---YKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVR-----ILIALAS 920
+ K DGT +KAR VA+G I DT+ P + TV ++LA
Sbjct: 858 NSMFIFNRKRDGT---HKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLAL 909
Query: 921 INSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEK 980
N++++ QLD+++A+L+ D+ E +Y+ P H +++ +L KSLYGLKQ+ WYE
Sbjct: 910 DNNYYITQLDISSAYLYADIKEELYIRPPP--HLGMNDKLIRLKKSLYGLKQSGANWYET 967
Query: 981 LTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEF- 1039
+ +L+ Q + S +S + ++VDD+IL + +I L ++
Sbjct: 968 IKSYLIKQCGMEEVRGWSCVFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYD 1024
Query: 1040 -KIKDLG----KLKY-FLGIEVAHS-----KLGISICQRKYCLDLLKDTGLLGAKPVTTP 1088
KI +LG +++Y LG+E+ + KLG+ + L G K ++ P
Sbjct: 1025 TKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRK-LSAP 1083
Query: 1089 LDPSIKLHQDNSPPHDD-----ILSYRRLVGKLLYL-TTTRPDIAFVVQQLSQFLNAPTI 1142
P + + Q +D + ++L+G Y+ R D+ + + L+Q + P+
Sbjct: 1084 GQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSK 1143
Query: 1143 THYDTACRVVKYLKGTPGQGLLFRRDSQL----QLLGFTDADWAGCPDSRRSTSGYCFFL 1198
D +++++ T + L++ + + +L+ +DA + P +S G + L
Sbjct: 1144 QVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASYGNQP-YYKSQIGNIYLL 1202
Query: 1199 GSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPV---LFCD 1255
+I ++ K S++EAE A+S + L L +L+++L NK P+ L D
Sbjct: 1203 NGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQEL----NKKPITKGLLTD 1258
Query: 1256 NQSAIH-IAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKN 1314
++S I I N R + +R+++ N + I+++ +AD TKPLP K
Sbjct: 1259 SKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKT 1318
Query: 1315 F 1315
F
Sbjct: 1319 F 1319
Score = 43.5 bits (101), Expect = 0.004
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 565 CDICHYSRHKKLP-FKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTW 623
C I ++H+ + +L + ++ +H DI+GP+ YFI+ D+ ++F W
Sbjct: 213 CLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRW 272
Query: 624 IMLCKTKSE--VSKSVQNFILNIENQFNCKVKTVRTDNGPEF---LMPDFYSSKGIEHQT 678
+ + E + + I+NQF V ++ D G E+ + F GI T
Sbjct: 273 VYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGI---T 329
Query: 679 SCVET 683
C T
Sbjct: 330 PCYTT 334
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 134 bits (338), Expect = 1e-30
Identities = 137/531 (25%), Positives = 252/531 (46%), Gaps = 56/531 (10%)
Query: 821 EPISY-KEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWV----YKIKHKS 875
E I+Y K+ +++ +++A + E++ L KTW D + K I K V + K
Sbjct: 809 EAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWD-TDEYYDRKEIDPKRVINSMFIFNKKR 867
Query: 876 DGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVR-----ILIALASINSWHLHQLD 930
DGT +KAR VA+G I DT+ + TV ++LA N++++ QLD
Sbjct: 868 DGT---HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLD 919
Query: 931 VNNAFLHGDLSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGY 990
+++A+L+ D+ E +Y+ P H +++ +L KSLYGLKQ+ WYE + +L+ Q
Sbjct: 920 ISSAYLYADIKEELYIRPPP--HLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCG 977
Query: 991 KQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEF--KIKDLG--- 1045
+ S +S + ++VDD+IL + +I L ++ KI +LG
Sbjct: 978 MEEVRGWSCVFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESD 1034
Query: 1046 -KLKY-FLGIEVAHS-----KLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQD 1098
+++Y LG+E+ + KLG+ + L G K ++ P P + + QD
Sbjct: 1035 NEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRK-LSAPGQPGLYIDQD 1093
Query: 1099 NSPPHDD-----ILSYRRLVGKLLYL-TTTRPDIAFVVQQLSQFLNAPTITHYDTACRVV 1152
+D + ++L+G Y+ R D+ + + L+Q + P+ D ++
Sbjct: 1094 ELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELI 1153
Query: 1153 KYLKGTPGQGLLFRRDSQLQ----LLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAK 1208
+++ T + L++ ++ + L+ +DA + P +S G + L +I ++
Sbjct: 1154 QFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQP-YYKSQIGNIYLLNGKVIGGKST 1212
Query: 1209 KQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPV---LFCDNQSAIHIAGN 1265
K S++EAE A+S + L L YL+++L NK P+ L D++S I I +
Sbjct: 1213 KASLTCTSTTEAEIHAISESVPLLNNLSYLIQEL----NKKPIIKGLLTDSRSTISIIKS 1268
Query: 1266 PVFHE-RTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNF 1315
+ R + +R+++ N + I+++ +AD TKPLP K F
Sbjct: 1269 TNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1319
Score = 44.3 bits (103), Expect = 0.002
Identities = 75/348 (21%), Positives = 133/348 (37%), Gaps = 48/348 (13%)
Query: 369 VTNHVTSGITRTSYTMNHSSF------GTWIVDSGASDHICSSIKFFDSYAPIIPVHI-- 420
++ T G T T+NH++ G ++DSGAS + S S + +++
Sbjct: 2 ISTTFTLGQELTESTVNHTNHSDDELPGHLLLDSGASRTLIRSAHHIHSASSNPDINVVD 61
Query: 421 ----KLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDND 476
+P + +F N + VL+ +LLS+ N + D
Sbjct: 62 AQKRNIPINAIGDLQFHFQDNTKTSI---KVLHTPNIAYDLLSL-------NELAAVDIT 111
Query: 477 KCFIQDK-SNLKMTGLGELIEGLYFLNLGSQVFSQFNHQ-PVIALSQSSSSTTFLPQEAL 534
CF ++ T L +++ F + + N P I +S ST P +
Sbjct: 112 ACFTKNVLERSDGTVLAPIVKYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFI 171
Query: 535 WHFRLGHLSNDRLLRMQ------QHFPCIKVDSNSVCD-------ICHYSRHKKLP-FKL 580
H L H +N + +R +F VD +S D I ++H+ + +L
Sbjct: 172 -HRMLAH-ANAQTIRYSLKNNTITYFNESDVDRSSAIDYQCPDCLIGKSTKHRHIKGSRL 229
Query: 581 SMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSE--VSKSVQ 638
+ ++ +H DI+GP+ YFI+ D+ ++F W+ + E +
Sbjct: 230 KYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFT 289
Query: 639 NFILNIENQFNCKVKTVRTDNGPEF---LMPDFYSSKGIEHQTSCVET 683
+ I+NQF V ++ D G E+ + F GI T C T
Sbjct: 290 TILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGI---TPCYTT 334
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 134 bits (337), Expect = 2e-30
Identities = 135/528 (25%), Positives = 253/528 (47%), Gaps = 50/528 (9%)
Query: 821 EPISY-KEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWV----YKIKHKS 875
E I+Y K+ +++ +++A + E++ L KTW D + K I K V + K
Sbjct: 1236 EAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWD-TDEYYDRKEIDPKRVINSMFIFNKKR 1294
Query: 876 DGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRIL--IALASINSWHLHQLDVNN 933
DGT +KAR VA+G ++ D +DT + ++ ++LA N++++ QLD+++
Sbjct: 1295 DGT---HKARFVARG--DIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISS 1349
Query: 934 AFLHGDLSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQS 993
A+L+ D+ E +Y+ P H +++ +L KS YGLKQ+ WYE + +L+ Q +
Sbjct: 1350 AYLYADIKEELYIRPPP--HLGMNDKLIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEE 1407
Query: 994 ASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEF--KIKDLG----KL 1047
S +S + ++VDD+IL + +I L ++ KI +LG ++
Sbjct: 1408 VRGWSCVFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEI 1464
Query: 1048 KY-FLGIEVAHS-----KLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSP 1101
+Y LG+E+ + KLG+ + L G K ++ P P + + QD
Sbjct: 1465 QYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRK-LSAPGQPGLYIDQDELE 1523
Query: 1102 PHDD-----ILSYRRLVGKLLYL-TTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYL 1155
+D + ++L+G Y+ R D+ + + L+Q + P+ D +++++
Sbjct: 1524 IDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFM 1583
Query: 1156 KGTPGQGLLFRRDSQLQ----LLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQH 1211
T + L++ ++ + L+ +DA + P +S G F L +I ++ K
Sbjct: 1584 WDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQP-YYKSQIGNIFLLNGKVIGGKSTKAS 1642
Query: 1212 TVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPV---LFCDNQSAIHIAGNPVF 1268
S++EAE A+S + L L YL+++L NK P+ L D++S I I +
Sbjct: 1643 LTCTSTTEAEIHAISESVPLLNNLSYLIQEL----NKKPIIKGLLTDSRSTISIIKSTNE 1698
Query: 1269 HE-RTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNF 1315
+ R + +R+++ N + I+++ +AD TKPLP K F
Sbjct: 1699 EKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1746
Score = 45.1 bits (105), Expect = 0.001
Identities = 96/451 (21%), Positives = 168/451 (36%), Gaps = 73/451 (16%)
Query: 266 RGNGNSNSNGKRSCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVNNSSIEQNEEREDLD 325
+G+ NS N +R+ S D + + P +N K NNS +
Sbjct: 351 QGSRNSKPNYRRNLSDEKNDSRSYTNTTK-----PKVIARNPQKTNNSKSKTARAH---- 401
Query: 326 DSKSCKGNSNTEPSFGITKEQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRTSYTMN 385
+ S NS + + I+K E + ++N H +T G T T+N
Sbjct: 402 -NVSTSNNSPSTDNDSISKSTTEPI------------QLNNKH---DLTLGQELTESTVN 445
Query: 386 HSSF------GTWIVDSGASDHICSSIKFFDSYAPIIPVHI------KLPNGNMAIAKFS 433
H++ G ++DSGAS + S S + +++ +P + +F
Sbjct: 446 HTNHSDDELPGHLLLDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFH 505
Query: 434 GTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDK-SNLKMTGLG 492
N + VL+ +LLS+ N + D CF ++ T L
Sbjct: 506 FQDNTKTSI---KVLHTPNIAYDLLSL-------NELAAVDITACFTKNVLERSDGTVLA 555
Query: 493 ELIEGLYFLNLGSQVFSQFNHQ-PVIALSQSSSSTTFLPQEALWHFRLGHLSNDRLLRMQ 551
+++ F + + N P I +S ST P + H L H +N + +R
Sbjct: 556 PIVQYGDFYWVSKRYLLPSNISVPTINNVHTSESTRKYPYPFI-HRMLAH-ANAQTIRYS 613
Query: 552 ------QHFPCIKVDSNSVCD-------ICHYSRHKKLP-FKLSMNKASHCYELIHFDIW 597
+F VD +S D I ++H+ + +L + ++ +H DI+
Sbjct: 614 LKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIF 673
Query: 598 GPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSE--VSKSVQNFILNIENQFNCKVKTV 655
GP+ YFI+ D+ ++F W+ + E + + I+NQF V +
Sbjct: 674 GPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVI 733
Query: 656 RTDNGPEF---LMPDFYSSKGIEHQTSCVET 683
+ D G E+ + F GI T C T
Sbjct: 734 QMDRGSEYTNRTLHKFLEKNGI---TPCYTT 761
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 133 bits (334), Expect = 4e-30
Identities = 170/721 (23%), Positives = 319/721 (43%), Gaps = 88/721 (12%)
Query: 662 EFLMPDFYSSKGIEHQTSCVE-TPQQNGRVLPYSNSNQYFQWQYHSNHPIIPAT--EQTS 718
+F D YS H + T N + +P + + + H + P I A+ E S
Sbjct: 1047 DFRHSDSYSENETNHTNVPISSTGGTNNKTVPQISDQETEKRIIHRS-PSIDASPPENNS 1105
Query: 719 SNSELPLENQ---SETNKEPAMHID---NNTHIQDPTQIEHEPQQLNTRKSTRVSQKPNH 772
S++ +P++ SE N E ++ D + + PT+ ++L S + +
Sbjct: 1106 SHNIVPIKTPTTVSEQNTEESIIADLPLPDLPPESPTEFPDPFKELPPINSRQTNSSLGG 1165
Query: 773 LSDYVCNSSSDSTKQAS---------SGILYPIKHYHSLNNISASHQKFALAITDA---- 819
+ D ++ +S K++ S + K+ SL + + +A A
Sbjct: 1166 IGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSI 1225
Query: 820 ---------SEPISY-KEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWV- 868
E I+Y K+ +++ +++A + E++ L KTW D + K I K V
Sbjct: 1226 KPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWD-TDEYYDRKEIDPKRVI 1284
Query: 869 ---YKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVR-----ILIALAS 920
+ K DGT +KAR VA+G I DT+ + TV ++LA
Sbjct: 1285 NSMFIFNKKRDGT---HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLAL 1336
Query: 921 INSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEK 980
N++++ QLD+++A+L+ D+ E +Y+ P H +++ +L KSLYGLKQ+ WYE
Sbjct: 1337 DNNYYITQLDISSAYLYADIKEELYIRPPP--HLGMNDKLIRLKKSLYGLKQSGANWYET 1394
Query: 981 LTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRI--KAVLDVE 1038
+ +L+ Q + S +S + ++VDD++L ++ RI K + +
Sbjct: 1395 IKSYLIQQCGMEEVRGWSCVFKNSQ---VTICLFVDDMVLFSKNLNSNKRIIEKLKMQYD 1451
Query: 1039 FKIKDLG----KLKY-FLGIEVAHS-----KLGISICQRKYCLDLLKDTGLLGAKPVTTP 1088
KI +LG +++Y LG+E+ + KLG+ + L G K ++ P
Sbjct: 1452 TKIINLGESDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRK-LSAP 1510
Query: 1089 LDPSIKLHQDNSPPHDD-----ILSYRRLVGKLLYL-TTTRPDIAFVVQQLSQFLNAPTI 1142
P + + Q +D + ++L+G Y+ R D+ + + L+Q + P+
Sbjct: 1511 GQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSK 1570
Query: 1143 THYDTACRVVKYLKGTPGQGLLFRRDSQL----QLLGFTDADWAGCPDSRRSTSGYCFFL 1198
D +++++ T + L++ + + +L+ +DA + P +S G + L
Sbjct: 1571 QVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASYGNQP-YYKSQIGNIYLL 1629
Query: 1199 GSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPV---LFCD 1255
+I ++ K S++EAE A+S + L L YL+++L +K P+ L D
Sbjct: 1630 NGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQEL----DKKPITKGLLTD 1685
Query: 1256 NQSAIH-IAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKN 1314
++S I I N R + +R+++ N + I+++ +AD TKPLP K
Sbjct: 1686 SKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKT 1745
Query: 1315 F 1315
F
Sbjct: 1746 F 1746
Score = 43.5 bits (101), Expect = 0.004
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 565 CDICHYSRHKKLP-FKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTW 623
C I ++H+ + +L + ++ +H DI+GP+ YFI+ D+ ++F W
Sbjct: 640 CLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRW 699
Query: 624 IMLCKTKSE--VSKSVQNFILNIENQFNCKVKTVRTDNGPEF---LMPDFYSSKGIEHQT 678
+ + E + + I+NQF V ++ D G E+ + F GI T
Sbjct: 700 VYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGI---T 756
Query: 679 SCVET 683
C T
Sbjct: 757 PCYTT 761
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 132 bits (331), Expect = 8e-30
Identities = 136/531 (25%), Positives = 250/531 (46%), Gaps = 56/531 (10%)
Query: 821 EPISY-KEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWV----YKIKHKS 875
E I+Y K+ +++ +++A + E++ L TW D + K I K V + K
Sbjct: 809 EAITYNKDIKEKEKYIEAYHKEVNQLLKMNTWD-TDKYYDRKEIDPKRVINSMFIFNRKR 867
Query: 876 DGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVR-----ILIALASINSWHLHQLD 930
DGT +KAR VA+G I DT+ + TV ++LA N++++ QLD
Sbjct: 868 DGT---HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLD 919
Query: 931 VNNAFLHGDLSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGY 990
+++A+L+ D+ E +Y+ P H +++ +L KSLYGLKQ+ WYE + +L+ Q
Sbjct: 920 ISSAYLYADIKEELYIRPPP--HLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCG 977
Query: 991 KQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEF--KIKDLG--- 1045
+ S +S + ++VDD+IL + +I L ++ KI +LG
Sbjct: 978 MEEVRGWSCVFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESD 1034
Query: 1046 -KLKY-FLGIEVAHS-----KLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQD 1098
+++Y LG+E+ + KLG+ + L G K ++ P P + + QD
Sbjct: 1035 NEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRK-LSAPGQPGLYIDQD 1093
Query: 1099 NSPPHDD-----ILSYRRLVGKLLYL-TTTRPDIAFVVQQLSQFLNAPTITHYDTACRVV 1152
+D + ++L+G Y+ R D+ + + L+Q + P+ D ++
Sbjct: 1094 ELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELI 1153
Query: 1153 KYLKGTPGQGLLFRRDSQLQ----LLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAK 1208
+++ T + L++ ++ + L+ +DA + P +S G + L +I ++
Sbjct: 1154 QFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQP-YYKSQIGNIYLLNGKVIGGKST 1212
Query: 1209 KQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPV---LFCDNQSAIH-IAG 1264
K S++EAE A+S + L L +L+++L NK P+ L D++S I I
Sbjct: 1213 KASLTCTSTTEAEIHAISESVPLLNNLSHLVQEL----NKKPITKGLLTDSKSTISIIIS 1268
Query: 1265 NPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNF 1315
N R + +R+++ N + I+++ +AD TKPLP K F
Sbjct: 1269 NNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
Score = 43.5 bits (101), Expect = 0.004
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 565 CDICHYSRHKKLP-FKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTW 623
C I ++H+ + +L + ++ +H DI+GP+ YFI+ D+ ++F W
Sbjct: 213 CLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRW 272
Query: 624 IMLCKTKSE--VSKSVQNFILNIENQFNCKVKTVRTDNGPEF---LMPDFYSSKGIEHQT 678
+ + E + + I+NQF V ++ D G E+ + F GI T
Sbjct: 273 VYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGI---T 329
Query: 679 SCVET 683
C T
Sbjct: 330 PCYTT 334
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 131 bits (330), Expect = 1e-29
Identities = 159/644 (24%), Positives = 280/644 (42%), Gaps = 81/644 (12%)
Query: 714 TEQTSSNSELPLENQSETNKEPAMHIDNNTHIQDPTQIEHEPQQLNTRKSTRVSQKPNHL 773
T+ + + ++P + +TN D+N L T KS + S + N
Sbjct: 1157 TDTSDVSKDIPHIHSRQTNSSLGGMDDSNV--------------LTTTKSKKRSLEDNET 1202
Query: 774 SDYVCNSSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEPISYKEA----- 828
V S D+ + L P + +N I+A K +I + Y EA
Sbjct: 1203 EIEV---SRDTWNNKNMRSLEPPRSKKRINLIAAI--KGVKSIKPVRTTLRYDEAITYNK 1257
Query: 829 --SQQDCWVKAMNSELSALNHNKTWIFV------DTPPNIKPIGSKWVYKIKHKSDGTIE 880
++D +V+A + E+S L TW D P K I S +++ K DGT
Sbjct: 1258 DNKEKDRYVEAYHKEISQLLKMNTWDTNKYYDRNDIDPK-KVINSMFIFN--KKRDGT-- 1312
Query: 881 RYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDL 940
+KAR VA+G Q D S + +++A N +++ QLD+++A+L+ D+
Sbjct: 1313 -HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADI 1371
Query: 941 SENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLF 1000
E +Y+ P H +++ +L KSLYGLKQ+ WYE + +L+ Q S
Sbjct: 1372 KEELYIRPPP--HLGLNDKLLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRGWSCV 1429
Query: 1001 ILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEF--KIKDLGKLKYFLGIEVAHS 1058
+S + ++VDD+IL + +I L ++ KI +LG+ E+ +
Sbjct: 1430 FKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDN----EIQYD 1482
Query: 1059 KLGISI-CQRKYCLDLLKDTGLLGAKP-VTTPLDP-SIKLHQDNSPPH------------ 1103
LG+ I QR + L + L P + PL+P KL P H
Sbjct: 1483 ILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDED 1542
Query: 1104 ---DDILSYRRLVGKLLYL-TTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTP 1159
+ + ++L+G Y+ R D+ + + L+Q + P+ D +++++ T
Sbjct: 1543 EYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTR 1602
Query: 1160 GQGLLFRRDSQL----QLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVAR 1215
+ L++ ++ +L+ +DA + P +S G F L +I ++ K
Sbjct: 1603 DKQLIWHKNKPTKPDNKLVAISDASYGNQP-YYKSQIGNIFLLNGKVIGGKSTKASLTCT 1661
Query: 1216 SSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPV---LFCDNQSAIHIAGNPVFHE-R 1271
S++EAE A+S A L L +L+++L NK P+ L D++S I I + + R
Sbjct: 1662 STTEAEIHAVSEAIPLLNNLSHLVQEL----NKKPIIKGLLTDSRSTISIIKSTNEEKFR 1717
Query: 1272 TKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNF 1315
+ +R+++ N + I+++ +AD TKPLP K F
Sbjct: 1718 NRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1761
Score = 53.1 bits (126), Expect = 5e-06
Identities = 84/404 (20%), Positives = 158/404 (38%), Gaps = 72/404 (17%)
Query: 304 NKNFAKVNNSSIEQNEEREDL--DDSKSCKGNSNTEPSFGITKEQYEQLVT-LLQSQQAS 360
+ F++VNN I ++ DD++ G E T + ++L LL AS
Sbjct: 402 SSKFSRVNNDHINESTVSSQYLSDDNELSLGQQQKESKPTHTIDSNDELPDHLLIDSGAS 461
Query: 361 SSKVNLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSIKFFDSYAPIIPVHI 420
+ V +H +H T S I D+ IP++
Sbjct: 462 QTLVRSAHYLHHATPN---------------------------SEINIVDAQKQDIPINA 494
Query: 421 KLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFI 480
GN+ +GT L N+ Y +LLS+ +L N +T CF
Sbjct: 495 I---GNLHFNFQNGTKTSIKALHTPNIAY------DLLSLSELANQN---IT----ACFT 538
Query: 481 QDK-SNLKMTGLGELIE--GLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHF 537
++ T L +++ Y+L+ + S + + +++S S + L H
Sbjct: 539 RNTLERSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLTINNVNKSKSVNKY--PYPLIHR 596
Query: 538 RLGHLSNDRLLRMQQHFPCIKVDSNSV------------CDICHYSRHKKLP-FKLSMNK 584
LGH + + + + + + + C I ++H+ + +L +
Sbjct: 597 MLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQE 656
Query: 585 ASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVS--KSVQNFIL 642
+ ++ +H DI+GP+ YFI+ D+ +RF W+ + E S + +
Sbjct: 657 SYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILA 716
Query: 643 NIENQFNCKVKTVRTDNGPEF---LMPDFYSSKGIEHQTSCVET 683
I+NQFN +V ++ D G E+ + F++++GI T+C T
Sbjct: 717 FIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGI---TACYTT 757
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 103 bits (258), Expect = 2e-21
Identities = 55/117 (47%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
Query: 805 ISASHQKFALAITDA--SEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKP 862
I+ + K++L IT EP S A + W +AM EL AL+ NKTWI V P N
Sbjct: 9 INKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNI 68
Query: 863 IGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALA 919
+G KWV+K K SDGT++R KARLVAKG+ Q EGI F +T+SPV + T+R ++ +A
Sbjct: 69 LGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 91.3 bits (225), Expect = 2e-17
Identities = 43/89 (48%), Positives = 57/89 (63%), Gaps = 5/89 (5%)
Query: 1117 LYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGF 1176
+YLT TRPD+ F V +LSQF +A +V+ Y+KGT GQGL + S LQL F
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1177 TDADWAGCPDSRRSTSGYC-----FFLGS 1200
D+DWA CPD+RRS +G+C +FLG+
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLVPLWFLGA 89
>M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300
(ORF145a) (ORF1451)
Length = 145
Score = 46.2 bits (108), Expect = 6e-04
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 490 GLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHLSND--RL 547
G+ ++++G + G++ S + Q + +S+ + T + LWH RL H+S L
Sbjct: 27 GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETRLWHSRLAHMSQRGMEL 86
Query: 548 LRMQQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWG 598
L + KV S C+ C Y + ++ F + + + +H D+WG
Sbjct: 87 LVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWG 137
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 40.8 bits (94), Expect = 0.025
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 565 CDICHYS----RHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSR 620
C+IC+ + R+ K+P K++ N HC E DI+ S G K++I+ +D YS+
Sbjct: 793 CNICNLAKTEHRNTKMPLKITPNP-EHCREKFVVDIY------SSEG-KHYISCIDIYSK 844
Query: 621 FTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEF 663
F + KTK + +N ++ I NQ K K ++ D F
Sbjct: 845 FATLEQIKTKDWI--ECRNALMRIFNQLG-KPKLLKADRDGAF 884
>MUTL_CLOPE (Q8XL86) DNA mismatch repair protein mutL
Length = 674
Score = 37.4 bits (85), Expect = 0.28
Identities = 46/254 (18%), Positives = 105/254 (41%), Gaps = 29/254 (11%)
Query: 610 YFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLMPDFY 669
+F+ +D Y + + TKSE+ + FI + F+ +R F +P+
Sbjct: 283 FFVLFIDTYPELIDVNIHPTKSEIKFKDERFIFKV--VFDAVHSAMREYVKDTFTLPEEE 340
Query: 670 SSK-----------GIEHQTSCVETPQQNGRVLPYSNSNQYFQWQYHSNHPIIPATEQTS 718
K ++ + S +E ++N + Y S + + +S +P +T
Sbjct: 341 EKKFEALKEEVIQESLDKEISTLEKLKEN---INYKVSEDKKKEEIYSYNPSKDYEAKTE 397
Query: 719 SNSELPLENQSETNKEPAMHIDNN------THIQDPTQIEHEPQQLNTRKSTRVSQKPN- 771
N +P++ S+ N++ + I+N+ + +I ++P + +VS+ +
Sbjct: 398 VN--IPVDFLSKENQDESFSINNSLENNEFKEVSAKREISYDPILIKNELKDKVSESTSE 455
Query: 772 --HLSDYVCNSSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEPISYKEAS 829
SDY CN + + I+Y + L I ++ + LA D++ + + A+
Sbjct: 456 SLERSDYKCNKNEYG--NSIEEIIYREAKFPKLRVIGQFNKTYILAEYDSTLYLIDQHAA 513
Query: 830 QQDCWVKAMNSELS 843
+ + +S+++
Sbjct: 514 HEKILFEKYSSDIA 527
>YL78_YEAST (Q05854) Putative transcriptional regulatory protein
YLR278C
Length = 1341
Score = 37.0 bits (84), Expect = 0.36
Identities = 32/163 (19%), Positives = 67/163 (40%), Gaps = 8/163 (4%)
Query: 233 SMVMQHERQFKISIPVEDSTILVNSAGKSQGRGRGNGNSNSNGKRSCSFCGRDGHTIDIC 292
S E+ KI++ +++ + ++S + N N N+N + + + + ++
Sbjct: 888 SFPSSQEKNLKINVNNDNNGMTISSVNREHNNNHNNNNDNNNNNNNNNNNSNNNNNVNNN 947
Query: 293 YRK-------HGFPPNYGNKNFAKVNNSSIEQNEEREDLDDSKSCKGNSNTEPSFGITKE 345
+ + N N + + NN ++E + ER D K + TE + + ++
Sbjct: 948 DNESNSRSTTNNSCNNGNNSQYVRNNNVTMENDVERPIQDQYIVKKPTNQTEFDWQVFQQ 1007
Query: 346 Q-YEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRTSYTMNHS 387
Q + Q + QA S +N +TN S + S +HS
Sbjct: 1008 QAFLQQQLAQHNLQAYLSSLNTDTMTNRSPSKSSSISTASSHS 1050
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 36.6 bits (83), Expect = 0.47
Identities = 34/126 (26%), Positives = 59/126 (45%), Gaps = 18/126 (14%)
Query: 565 CDICHYS----RHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSR 620
C IC+ + R+ +P K + K HC E DI+ S G K++++ +D YS+
Sbjct: 793 CSICNLAKTEHRNTDMPTKTTP-KPEHCREKFMIDIY------SSEG-KHYVSCIDIYSK 844
Query: 621 FTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEF---LMPDFYSSKGIEHQ 677
F + KTK + +N ++ I NQ K K ++ D F + + S+ +E Q
Sbjct: 845 FATLEEIKTKDWI--ECKNALMRIFNQLG-KPKLLKADRDGAFSSLALKRWLESEEVELQ 901
Query: 678 TSCVET 683
+ +T
Sbjct: 902 LNTTKT 907
>PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV)
Length = 513
Score = 36.2 bits (82), Expect = 0.62
Identities = 33/152 (21%), Positives = 63/152 (40%), Gaps = 16/152 (10%)
Query: 685 QQNGRVLPYSNSNQYFQWQYHSNHPIIPATEQT----SSNSELPLENQSETNKEPAMHID 740
Q+N + S Q+ + H P AT+Q + N++ N + + +PA H
Sbjct: 285 QRNAKPAQQQRSAQHAKPAQHGK-PAQHATQQQHAKPAQNAKPVQHNAQQQHAKPAQHAA 343
Query: 741 NNTHIQDPTQIEHEPQQLNTRKSTRVSQKP-NHLSDYVCNSSSDSTKQASSGILYPIKHY 799
H + + + QQ + + + + KP H N+ K A+ P++H
Sbjct: 344 QQQHAKPAQHVAQQQQQQHAKPAAHTAAKPVQH------NAQQQHAKPAAHTAAKPVQHN 397
Query: 800 HSLNNIS-ASHQKFALAITDASEPISYKEASQ 830
+ + A+H K A+ +A+ P+ + A Q
Sbjct: 398 AAQQHAKPAAHAKPAV---NAARPVQHNAAQQ 426
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,758,303
Number of Sequences: 164201
Number of extensions: 6927535
Number of successful extensions: 17578
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 17459
Number of HSP's gapped (non-prelim): 88
length of query: 1336
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1214
effective length of database: 39,941,532
effective search space: 48489019848
effective search space used: 48489019848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC148395.6