BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148360.12 + phase: 0 /pseudo
         (102 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NNMT_HUMAN (P40261) Nicotinamide N-methyltransferase (EC 2.1.1.1)      30  0.79
NNMT_MOUSE (O55239) Nicotinamide N-methyltransferase (EC 2.1.1.1)      29  2.3
TCPH_MOUSE (P80313) T-complex protein 1, eta subunit (TCP-1-eta)...    28  3.0
TCPH_HUMAN (Q99832) T-complex protein 1, eta subunit (TCP-1-eta)...    28  3.0
VIB2_AGRTU (P09776) VirB2 protein precursor                            28  3.9
VIB2_AGRT9 (P05351) VirB2 protein precursor                            28  3.9
C1TC_DROME (O96553) C-1-tetrahydrofolate synthase, cytoplasmic (...    28  3.9
MUTL_CLOTT (Q05491) MutL protein                                       28  5.1
KTN1_VULVU (O97961) Kinectin                                           27  6.7
TCPH_TETPY (P54409) T-complex protein 1, eta subunit (TCP-1-eta)...    27  8.7
DHAS_BACSU (Q04797) Aspartate-semialdehyde dehydrogenase (EC 1.2...    27  8.7

>NNMT_HUMAN (P40261) Nicotinamide N-methyltransferase (EC 2.1.1.1)
          Length = 264

 Score = 30.4 bits (67), Expect = 0.79
 Identities = 12/31 (38%), Positives = 19/31 (60%)

Query: 19 KFGCRKSLKGDILEQISAAKALFQLISACSA 49
          K  C   +KGD+L  I +   ++QL+SAC +
Sbjct: 47 KIFCLDGVKGDLLIDIGSGPTIYQLLSACES 77


>NNMT_MOUSE (O55239) Nicotinamide N-methyltransferase (EC 2.1.1.1)
          Length = 264

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 19 KFGCRKSLKGDILEQISAAKALFQLISACSA 49
          K  C  ++KG++L  I +   ++QL+SAC +
Sbjct: 47 KIFCLGAVKGELLIDIGSGPTIYQLLSACES 77


>TCPH_MOUSE (P80313) T-complex protein 1, eta subunit (TCP-1-eta)
           (CCT-eta)
          Length = 544

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 36  AAKALFQLISACSASVG-GSKSIALLAPKAMKEVKSLVD 73
           AAK L  +  +  A VG G+ S+ LLA + +K+VK  V+
Sbjct: 75  AAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVE 113


>TCPH_HUMAN (Q99832) T-complex protein 1, eta subunit (TCP-1-eta)
           (CCT-eta) (HIV-1 Nef interacting protein)
          Length = 543

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 36  AAKALFQLISACSASVG-GSKSIALLAPKAMKEVKSLVD 73
           AAK L  +  +  A VG G+ S+ LLA + +K+VK  V+
Sbjct: 75  AAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVE 113


>VIB2_AGRTU (P09776) VirB2 protein precursor
          Length = 121

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 31 LEQISAAKALFQLISACSASVGGSK--SIALLAPKAMKEVKSLVDMILGFMSIC 82
          L ++S + A+ ++IS+C+ S+GG+   SI+   P A +      D      +IC
Sbjct: 11 LNRLSLSNAMMRVISSCAPSLGGAMAWSISSCGPAAAQSAGGGTDPATMVNNIC 64


>VIB2_AGRT9 (P05351) VirB2 protein precursor
          Length = 121

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 31 LEQISAAKALFQLISACSASVGGSK--SIALLAPKAMKEVKSLVDMILGFMSIC 82
          L ++S + A+ ++IS+C+ S+GG+   SI+   P A +      D      +IC
Sbjct: 11 LNRLSLSNAMMRVISSCAPSLGGAMAWSISSCGPAAAQSAGGGTDPATMVNNIC 64


>C1TC_DROME (O96553) C-1-tetrahydrofolate synthase, cytoplasmic
           (C1-THF synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)]
          Length = 968

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 13/29 (44%), Positives = 19/29 (64%)

Query: 59  LLAPKAMKEVKSLVDMILGFMSICCSKIS 87
           +L+P A ++VK L D   G + IC SK+S
Sbjct: 873 VLSPAAEEKVKRLTDAGFGNLPICMSKVS 901


>MUTL_CLOTT (Q05491) MutL protein
          Length = 462

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 10 DVIWVYSAIKFGCRKSLKGDILEQISAAKALFQLISACSASVGGSKSIAL-LAPKAMKE 67
          D+  + S I  G  K+ +  + EQ+   +  F    ACS++ GG K IA+ L P+   E
Sbjct: 32 DITTIESDIMVGFNKAYE-KLTEQLEGKEVNFVKKLACSSAAGGLKMIAIGLVPELTAE 89


>KTN1_VULVU (O97961) Kinectin
          Length = 1330

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 29  DILEQISAAKALF-----QLISACSASVGGSKSIALLAPKAMKEVKSLVDMILGFMSICC 83
           DILEQ  A KAL      Q+ +  SASV   +   ++A K  K++K   D +        
Sbjct: 573 DILEQNEALKALIQQFHSQIAAQTSASVLAEELHKVIAEKD-KQIKQTEDSLANEHDHLT 631

Query: 84  SKISEEKDL 92
           SK  E KD+
Sbjct: 632 SKEEELKDI 640


>TCPH_TETPY (P54409) T-complex protein 1, eta subunit (TCP-1-eta)
           (CCT-eta)
          Length = 558

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 36  AAKALFQLISACSASVG-GSKSIALLAPKAMKEVKSLVD 73
           AAK L  +  A    VG G+ S+ LLA + +KE K+ ++
Sbjct: 74  AAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKNFIE 112


>DHAS_BACSU (Q04797) Aspartate-semialdehyde dehydrogenase (EC
           1.2.1.11) (ASA dehydrogenase) (ASADH)
          Length = 346

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 19/58 (32%), Positives = 29/58 (49%), Gaps = 1/58 (1%)

Query: 21  GCRKSLKGDILEQISAAKALFQLISACSASVGGSKSIALLAPKAMKEVKSLVDMILGF 78
           G + + KG  L    A+   F+ ++    S GGS S A LAP+A+K    ++D    F
Sbjct: 44  GTKVTFKGQELTVQEASPESFEGVNIALFSAGGSVSQA-LAPEAVKRGAIVIDNTSAF 100


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.321    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,516,589
Number of Sequences: 164201
Number of extensions: 296809
Number of successful extensions: 774
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 11
length of query: 102
length of database: 59,974,054
effective HSP length: 78
effective length of query: 24
effective length of database: 47,166,376
effective search space: 1131993024
effective search space used: 1131993024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)