BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148359.6 + phase: 0 /pseudo
         (2066 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ROAA_EUGGR (P30397) Ribosomal operon-associated A protein (RoaA)       38  0.33
YAB2_SCHPO (Q09804) Hypothetical protein C2G11.02 in chromosome I      34  4.8

>ROAA_EUGGR (P30397) Ribosomal operon-associated A protein (RoaA)
          Length = 516

 Score = 37.7 bits (86), Expect = 0.33
 Identities = 23/78 (29%), Positives = 39/78 (49%), Gaps = 12/78 (15%)

Query: 1976 LFLFHFTFGQILFFIQILFFLHFGPSIEVPKLHFCPNFFFYFISSFFNFAV*SSSSYFCR 2035
            L +F+F F  + FF Q  FF+    S +V  L +   F+F+F   +          + C+
Sbjct: 212  LIIFNFIFNGLNFFFQENFFI----SYKVYYLFYIDKFYFFFKFPY--------DFFICK 259

Query: 2036 KVQSSFFQVQGRAISIQI 2053
            K+  SFF ++G  ++I I
Sbjct: 260  KIIISFFSLRGIILNINI 277


>YAB2_SCHPO (Q09804) Hypothetical protein C2G11.02 in chromosome I
          Length = 1318

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 20/161 (12%)

Query: 814 KVQSLRKLGLLWLH*RMLGEPSKKVRLPAGAR*YSSVRTSVKKVSGSPRHQGFPRESSTV 873
           K Q  R L LL +H ++L +      +        S+R  +  +  +P   GF R+   +
Sbjct: 765 KNQRTRLLNLLIIHEKLLSDKDNSAHI--------SLRKIIYTLMKTPCSSGFYRDPKII 816

Query: 874 LGLLM-----LSLKKPLDLVSGLYLLHQEALRQIGMPLTFLQSCMF------LSNVSCCF 922
           + L+      LS  K   L+   ++ H +   +  + L  LQ  +       L  ++  F
Sbjct: 817 IDLMQFGKTDLSFHKVHVLIMRSWIQHLDEGNKSEVILKLLQLILADFRELPLETITLIF 876

Query: 923 NALFSK*QSSRSAQSESDIFCKGMFVSASPLINKILSFLPR 963
           NAL     +S+  ++ +DI    +F     LI+++ ++L +
Sbjct: 877 NALVDSLPTSKHIKNSNDIL-SSVFTINDMLIDEMTAYLSK 916


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.364    0.161    0.615 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,694,891
Number of Sequences: 164201
Number of extensions: 6363795
Number of successful extensions: 27839
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 27837
Number of HSP's gapped (non-prelim): 3
length of query: 2066
length of database: 59,974,054
effective HSP length: 126
effective length of query: 1940
effective length of database: 39,284,728
effective search space: 76212372320
effective search space used: 76212372320
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 74 (33.1 bits)