BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148349.4 - phase: 0
(151 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DX5A_BRARE (P50576) Homeobox protein Dlx5a (DLX-4) 36 0.028
RS11_MYCLE (Q9X7A0) 30S ribosomal protein S11 30 1.5
GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix prote... 30 1.5
GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix prote... 30 1.5
CAD6_HUMAN (P55285) Cadherin-6 precursor (Kidney-cadherin) (K-ca... 30 2.6
DPD3_MOUSE (Q9EQ28) DNA polymerase delta subunit 3 (DNA polymera... 29 4.5
CP51_UNCNE (O14442) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (... 29 4.5
H2B4_CHLRE (P54347) Histone H2B-IV 28 5.9
DLX4_ELECQ (P87394) Homeobox protein DLX-4 (Fragment) 28 5.9
RS11_STRCO (P72403) 30S ribosomal protein S11 28 7.7
RS11_STRAW (Q82DM3) 30S ribosomal protein S11 28 7.7
PER_ANTPE (Q17062) Period circadian protein 28 7.7
CAD6_RAT (P55280) Cadherin-6 precursor (Kidney-cadherin) (K-cadh... 28 7.7
>DX5A_BRARE (P50576) Homeobox protein Dlx5a (DLX-4)
Length = 283
Score = 36.2 bits (82), Expect = 0.028
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 61 GSYRATYNYFIQPVNSQIYWEPTPYEK-SAPPKVRRAAGRPKKNRRKDGNKEPIGRSQMK 119
GSY Y+ + N ++ +P+P EK +A P+VR G+PKK R+ + ++
Sbjct: 95 GSYSTAYHQYAGTYN-RVQSQPSPQEKETAEPEVRMVNGKPKKVRKPRTIYSSFQLAALQ 153
Query: 120 RTYNDTQ 126
R + +TQ
Sbjct: 154 RRFQNTQ 160
>RS11_MYCLE (Q9X7A0) 30S ribosomal protein S11
Length = 138
Score = 30.4 bits (67), Expect = 1.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 90 PPKVRRAAGRPK--KNRRKDGNKEPIGRSQMKRTYNDT 125
PPK AAG K K R+++ P G + +K T+N+T
Sbjct: 2 PPKKANAAGPKKGQKTRKREKKNIPYGAAHIKSTFNNT 39
>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein
p17; Capsid protein p26; Nucleocapsid protein p14]
Length = 476
Score = 30.4 bits (67), Expect = 1.5
Identities = 23/102 (22%), Positives = 41/102 (39%), Gaps = 8/102 (7%)
Query: 43 DTPMQRYQIEHCHAWLTLGSYRATYNYFIQPVNSQIYWEPTPYEKSAPPKVRRA-AGRPK 101
+TPM++ ++E C +GS ++ + + + P P P+ + P+
Sbjct: 345 NTPMEK-KLEACRV---VGSQKSKMQFLVAAMKEMGIQSPIPAVLPHTPEAYASQTSGPE 400
Query: 102 KNRRKDGNKEPIGRSQMKRTYNDTQCGRCGLIGHNLRGCNKQ 143
RR G + +KR +C CG GH R C +
Sbjct: 401 DGRRCYGCGKT---GHLKRNCKQQKCYHCGKPGHQARNCRSK 439
>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein
p17; Capsid protein p26; Nucleocapsid protein p14]
Length = 476
Score = 30.4 bits (67), Expect = 1.5
Identities = 23/102 (22%), Positives = 41/102 (39%), Gaps = 8/102 (7%)
Query: 43 DTPMQRYQIEHCHAWLTLGSYRATYNYFIQPVNSQIYWEPTPYEKSAPPKVRRA-AGRPK 101
+TPM++ ++E C +GS ++ + + + P P P+ + P+
Sbjct: 345 NTPMEK-KLEACRV---VGSQKSKMQFLVAAMKEMGIQSPIPAVLPHTPEAYASQTSGPE 400
Query: 102 KNRRKDGNKEPIGRSQMKRTYNDTQCGRCGLIGHNLRGCNKQ 143
RR G + +KR +C CG GH R C +
Sbjct: 401 DGRRCYGCGKT---GHLKRNCKQQKCYHCGKPGHQARNCRSK 439
>CAD6_HUMAN (P55285) Cadherin-6 precursor (Kidney-cadherin)
(K-cadherin)
Length = 790
Score = 29.6 bits (65), Expect = 2.6
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 66 TYNYFIQPVNSQIYWEPTPYEKSAPPKVRRAAGRPKKNRRKD---GNKEPIGRSQMKRTY 122
TY YF+ ++W PY + P +R +G P K R + +K + RS+ +
Sbjct: 3 TYRYFLL-----LFWVGQPYPTLSTPLSKRTSGFPAKKRALELSGNSKNELNRSKRSWMW 57
Query: 123 N 123
N
Sbjct: 58 N 58
>DPD3_MOUSE (Q9EQ28) DNA polymerase delta subunit 3 (DNA polymerase
delta subunit p66)
Length = 462
Score = 28.9 bits (63), Expect = 4.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 82 PTPYEKSAPPKVRRAAGRPKKNRRK 106
P P K+ PP V+R++G K+ R++
Sbjct: 357 PDPMPKTEPPPVKRSSGETKRRRKR 381
>CP51_UNCNE (O14442) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI)
(P450-LIA1) (Sterol 14-alpha demethylase) (Eburicol
14-alpha-demethylase) (P450-14DM)
Length = 524
Score = 28.9 bits (63), Expect = 4.5
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 73 PVNSQIYWEPTPYEKSAPPKVRRAA-------GRPKKNRRKDGNKEPIGRSQMKRTYND 124
P+N YW P P+ ++ R A ++ +R NK I M+ TY D
Sbjct: 231 PINFTFYWAPLPWNRARDHAQRTVARTYMNIIQARREEKRSGENKHDIMWELMRSTYKD 289
>H2B4_CHLRE (P54347) Histone H2B-IV
Length = 153
Score = 28.5 bits (62), Expect = 5.9
Identities = 14/36 (38%), Positives = 18/36 (49%)
Query: 84 PYEKSAPPKVRRAAGRPKKNRRKDGNKEPIGRSQMK 119
P + A PK +AA + KK K KEP G + K
Sbjct: 19 PAKAEAKPKAEKAAKKAKKEPSKKAAKEPKGDGEKK 54
>DLX4_ELECQ (P87394) Homeobox protein DLX-4 (Fragment)
Length = 131
Score = 28.5 bits (62), Expect = 5.9
Identities = 19/64 (29%), Positives = 31/64 (47%), Gaps = 7/64 (10%)
Query: 63 YRATYNYFIQPVNSQIYWEPTPYEKSAPPKVRRAAGRPKKNRRKDGNKEPIGRSQMKRTY 122
Y YN +QP ++Q P ++ A P+VR G+PKK R+ + ++R +
Sbjct: 49 YSGAYNR-VQPPSTQ------PEKEVAEPEVRMVNGKPKKIRKPRTIYSSFQVAALQRRF 101
Query: 123 NDTQ 126
TQ
Sbjct: 102 QKTQ 105
>RS11_STRCO (P72403) 30S ribosomal protein S11
Length = 134
Score = 28.1 bits (61), Expect = 7.7
Identities = 15/36 (41%), Positives = 21/36 (57%), Gaps = 2/36 (5%)
Query: 90 PPKVRRAAGRPKKNRRKDGNKEPIGRSQMKRTYNDT 125
PPK R+ A KK RRK+ G + +K T+N+T
Sbjct: 2 PPKGRQGAA--KKVRRKEKKNVAHGHAHIKSTFNNT 35
>RS11_STRAW (Q82DM3) 30S ribosomal protein S11
Length = 134
Score = 28.1 bits (61), Expect = 7.7
Identities = 15/36 (41%), Positives = 21/36 (57%), Gaps = 2/36 (5%)
Query: 90 PPKVRRAAGRPKKNRRKDGNKEPIGRSQMKRTYNDT 125
PPK R+ A KK RRK+ G + +K T+N+T
Sbjct: 2 PPKGRQGAA--KKVRRKEKKNVAHGHAHIKSTFNNT 35
>PER_ANTPE (Q17062) Period circadian protein
Length = 849
Score = 28.1 bits (61), Expect = 7.7
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 93 VRRAAGRP------KKNRRKDGNKEPIGRSQMKRTYNDTQCGRCGLIGHNLRGCNKQGVA 146
V + GRP + N + ++P+G S++ T QCG +I H+ RG G
Sbjct: 788 VTTSEGRPSEPNYHRNNMNNNQFQQPLGNSRLPTTICVIQCGTSRII-HSFRGTRTTGGT 846
Query: 147 R 147
R
Sbjct: 847 R 847
>CAD6_RAT (P55280) Cadherin-6 precursor (Kidney-cadherin)
(K-cadherin)
Length = 789
Score = 28.1 bits (61), Expect = 7.7
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 66 TYNYFIQPVNSQIYWEPTPYEKSAPPKVRRAAGRPKKNRRKD---GNKEPIGRSQMKRTY 122
TY YF+ ++W PY + P +R +G P K R + ++ + RS+ +
Sbjct: 3 TYRYFLL-----LFWVGQPYPTFSNPLSKRTSGFPAKRRALELSANSRNELSRSKRSWMW 57
Query: 123 N 123
N
Sbjct: 58 N 58
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.134 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,874,397
Number of Sequences: 164201
Number of extensions: 829436
Number of successful extensions: 2048
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2042
Number of HSP's gapped (non-prelim): 15
length of query: 151
length of database: 59,974,054
effective HSP length: 100
effective length of query: 51
effective length of database: 43,553,954
effective search space: 2221251654
effective search space used: 2221251654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC148349.4