BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148345.6 + phase: 0
(570 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GAOA_DACDE (Q01745) Galactose oxidase precursor (EC 1.1.3.9) (GAO) 76 3e-13
UZIP_DROME (P10379) Unzipped protein precursor (Zipper protein) 36 0.31
KELC_ANOST (Q70JS2) Ring canal kelch homolog (Kelch-like protein... 33 2.6
VL2_HPV35 (P27234) Minor capsid protein L2 32 5.8
SHK3_HUMAN (Q9BYB0) SH3 and multiple ankyrin repeat domains prot... 32 5.8
POL1_BAYMJ (Q01206) Genome polyprotein 1 [Contains: Protein P3; ... 32 5.8
MTR2_YEAST (P34232) mRNA transport regulator MTR2 32 5.8
YOR3_YEREN (P28836) Hypothetical UPF0075 protein (ORF3) 31 7.6
AMNL_MOUSE (Q99JB7) Amnionless protein precursor 31 9.9
>GAOA_DACDE (Q01745) Galactose oxidase precursor (EC 1.1.3.9) (GAO)
Length = 680
Score = 75.9 bits (185), Expect = 3e-13
Identities = 119/471 (25%), Positives = 195/471 (41%), Gaps = 72/471 (15%)
Query: 121 RSLTV-QTDTWCSSGSVLSNGTLVQTGGFNDGERRIRMFTPCFNENCD-WIEFPSYLSER 178
R++TV + D +C S+ NG +V TGG ND ++ T ++ + D WI P +
Sbjct: 258 RTVTVTKHDMFCPGISMDGNGQIVVTGG-NDAKK-----TSLYDSSSDSWIPGPD-MQVA 310
Query: 179 RWYATNQILPDNRIIIIGGRRQFNYEFIPKTTTSSSSSSSSSIHLSFLQETNDPSENNLY 238
R Y ++ + D R+ IGG S SS + +S+ + + + LY
Sbjct: 311 RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 370
Query: 239 PFVHLLPNGNLFIFANTRSILFDYKQNVVVKEFPEIPGGDPHNYPSSGSSVLLPLDENQI 298
++ + LF +K+ V F P + Y +SGS + + Q
Sbjct: 371 R-------------SDNHAWLFGWKKGSV---FQAGPSTAMNWYYTSGSGDVKSAGKRQS 414
Query: 299 SME-ATIMICGGAPRGSFEAAKGK--------NFMPALKTCGFLKVTDSNPS------WI 343
+ A +CG A ++A KGK ++ + T +T P +
Sbjct: 415 NRGVAPDAMCGNAVM--YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA 472
Query: 344 IENMPMARVMGDMLILPNGDVIIINGAGSGTAGWENGRQPVLTPVIFRSSETKSDKRFSV 403
+ AR ++LP+G I G G ++ PV TP I+ F
Sbjct: 473 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS--TPVFTPEIY----VPEQDTFYK 526
Query: 404 MSPASRPRLYHSSAIVLRDGRVLVGGSNPHVNYNFTGVEFPTDLSLEAFSPPYL--SLEF 461
+P S R+YHS +++L DGRV GG G + F+P YL S
Sbjct: 527 QNPNSIVRVYHSISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGN 580
Query: 462 DLVRPTIWHVTNKI--LGYRVFYYVTFTVAKFASASEVSVRLLAPSFTTHSFGMNQRMVV 519
RP I + + +G R+ T++ +S S+ S L+ TH+ +QR +
Sbjct: 581 LATRPKITRTSTQSVKVGGRI------TISTDSSISKAS--LIRYGTATHTVNTDQRRIP 632
Query: 520 LKLIGVTMVNLDIYYATVVGPSTQEIAPPGYYLLFLVH-AGVPSSGEWVQL 569
L L N Y+ V PS +A PGY++LF+++ AGVPS +++
Sbjct: 633 LTLTN----NGGNSYSFQV-PSDSGVALPGYWMLFVMNSAGVPSVASTIRV 678
>UZIP_DROME (P10379) Unzipped protein precursor (Zipper protein)
Length = 488
Score = 35.8 bits (81), Expect = 0.31
Identities = 17/46 (36%), Positives = 29/46 (62%), Gaps = 1/46 (2%)
Query: 202 NYEFIPKTTTSSSSSSSSSIHLSFLQETNDPSENNLYPFVHLLPNG 247
N +P TTT++++S+S++ H + TN+P+ N P VH+ NG
Sbjct: 374 NGTLVPTTTTTTTTSTSTTTHAT-TTSTNEPTPINEPPLVHMKDNG 418
>KELC_ANOST (Q70JS2) Ring canal kelch homolog (Kelch-like protein 1)
[Contains: Kelch short protein]
Length = 1499
Score = 32.7 bits (73), Expect = 2.6
Identities = 24/70 (34%), Positives = 33/70 (46%), Gaps = 1/70 (1%)
Query: 113 YDIATNTFRSLTVQTDTWCSSGSVLSNGTLVQTGGFNDGERRIRMFTPCFNENCDWIEFP 172
YD ATNT+R++ ++G V NG L GG +DG + E+ W P
Sbjct: 559 YDPATNTWRAVGDMAFCRRNAGVVAHNGMLYVVGG-DDGLSNLASVEVYSPESDSWRILP 617
Query: 173 SYLSERRWYA 182
S +S R YA
Sbjct: 618 SSMSIGRSYA 627
>VL2_HPV35 (P27234) Minor capsid protein L2
Length = 469
Score = 31.6 bits (70), Expect = 5.8
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 34 PSPLPSLLSSPSSNQGEWELIQPTIGISAMHMQLSHNNKIIIFDRTDFGPSN--LPLSNG 91
PS LP S S N G +++ P + S NN + T + PSN +PLS+G
Sbjct: 343 PSSLPHTTVSTSLNDGMFDIYAPIDTEEDIIFSASSNNTLYTTSNTAYVPSNTTIPLSSG 402
>SHK3_HUMAN (Q9BYB0) SH3 and multiple ankyrin repeat domains protein
3 (Shank3) (Proline-rich synapse-associated protein 2)
(ProSAP2) (Fragment)
Length = 797
Score = 31.6 bits (70), Expect = 5.8
Identities = 18/34 (52%), Positives = 20/34 (57%), Gaps = 6/34 (17%)
Query: 17 IPH------FHILIVSSSSSSPSPSPLPSLLSSP 44
IPH F + VS+ S SPSPSPLPS S P
Sbjct: 682 IPHEPKEVRFVVRSVSARSRSPSPSPLPSPASGP 715
>POL1_BAYMJ (Q01206) Genome polyprotein 1 [Contains: Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (EC 3.4.22.44) (NI-a) (NIa)
(NIa-pro); Nuclea
Length = 2410
Score = 31.6 bits (70), Expect = 5.8
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 138 SNGTLVQTGGFNDGERRIRMFTPCFNENC----DWIEFPSYLSERRWYATNQILPDNRI 192
S G L+ G + R R+F FN NC DWI P +L +R T Q PD +
Sbjct: 1364 STGILLSQVGVDVATRVGRIFIGTFNMNCYFYSDWILVPGHLQDRSGNVTIQ-FPDQTV 1421
>MTR2_YEAST (P34232) mRNA transport regulator MTR2
Length = 184
Score = 31.6 bits (70), Expect = 5.8
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 226 LQETNDPSENNLYPFVHLL-PNGNLFIFANT----RSILFDYKQNVVVKEFPEIPGGDPH 280
L +DP N L FV L PN IF T ++ QN VV+ + G D H
Sbjct: 27 LAHLDDPDSNKLAQFVQLFNPNNCRIIFNATPFAQATVFLQMWQNQVVQTQHALTGVDYH 86
Query: 281 NYPSSGSSV 289
P SG+ +
Sbjct: 87 AIPGSGTLI 95
>YOR3_YEREN (P28836) Hypothetical UPF0075 protein (ORF3)
Length = 125
Score = 31.2 bits (69), Expect = 7.6
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 19/100 (19%)
Query: 269 KEFPEIPGGDPHNYPSSGSSVLLPLDENQISMEA---TIMICGGAPRGSFEAAKGKNFMP 325
K+ +IPG P + ++ + + Q+ + +++CGG R ++ +P
Sbjct: 27 KQLNKIPGIKPEDVQATLAELTALSVAEQVQLAGGCERLLVCGGGARNPLVMSRMSTLLP 86
Query: 326 ALKTCGFLKVTDS------------NPSWIIENMPMARVM 353
+ C VTD +P W+ E P+ RV+
Sbjct: 87 GTEVC----VTDDFGVSGDDMEALHSPGWLFEPCPVNRVI 122
>AMNL_MOUSE (Q99JB7) Amnionless protein precursor
Length = 458
Score = 30.8 bits (68), Expect = 9.9
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 25/124 (20%)
Query: 350 ARVMGDMLILPNGDVIIINGAGSGTAGWENGRQPVL---TPVIFR-------------SS 393
+ + DML+ +G++++ +GA AG ++ P P++FR SS
Sbjct: 63 SHAISDMLLPLDGELVLASGAALSAAGGDS--DPACNPGAPLLFRNPDRFSWLDPHLWSS 120
Query: 394 ETKSDKRFSVMSPASRPRLYHSSAIVLRDG--RVLVG-GSNP-HV-NYNFTGVEFPTDLS 448
T++ FSV A R + + RDG RV +G G NP HV + + G F D
Sbjct: 121 GTQAPGLFSV--DAERVPCSYDDVLFPRDGSFRVALGPGPNPVHVRSVSAVGQTFSRDED 178
Query: 449 LEAF 452
L AF
Sbjct: 179 LTAF 182
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,929,495
Number of Sequences: 164201
Number of extensions: 3206843
Number of successful extensions: 9275
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9266
Number of HSP's gapped (non-prelim): 12
length of query: 570
length of database: 59,974,054
effective HSP length: 116
effective length of query: 454
effective length of database: 40,926,738
effective search space: 18580739052
effective search space used: 18580739052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC148345.6