BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148291.6 - phase: 0
(1161 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 144 1e-33
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 129 6e-29
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 124 1e-27
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 123 3e-27
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 116 3e-25
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 108 1e-22
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 105 5e-22
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 104 1e-21
POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.2... 104 1e-21
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 104 1e-21
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 103 2e-21
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 103 2e-21
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 103 2e-21
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 102 6e-21
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 101 1e-20
POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse transcript... 99 7e-20
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 98 1e-19
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 96 6e-19
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 94 2e-18
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 94 3e-18
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 144 bits (364), Expect = 1e-33
Identities = 145/538 (26%), Positives = 228/538 (41%), Gaps = 39/538 (7%)
Query: 611 HAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHAALKYLLTKGD 670
H I +ASK L+ + Y T+ E LA++FAL +F++ + G+ + VFTDH L LL
Sbjct: 1269 HPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSP 1328
Query: 671 SKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSR----------LDNKEVTKKKGAIMA 720
RL RW + + EFD++I G N VAD LSR KE+T AI
Sbjct: 1329 LADRLWRWSIEILEFDVKIVYLAGKANAVADALSRGGCPPNELEEEQTKELTSIVNAIQT 1388
Query: 721 EFPDEKLFAIGERPWFADMANFKAG-NIVPDDFEYHQRKKFFKDANHYVWDDPYLFKVST 779
E PD + W + G V E + K FK +K+
Sbjct: 1389 ELPD----ILDSSCWLERLKGEDEGWKEVIAALEGGKTKGTFKIVGIESEISLEYYKI-V 1443
Query: 780 DGLMRRCVAGEEAHSI---------MWHCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKD 830
G+++ E++ S+ + H GH G + +++ F+WP +
Sbjct: 1444 GGVLKNTEIEEQSRSVVPEKIRTPLLKELHEGMLAGHF-GIKKMWRMVHRKFYWPQMRVC 1502
Query: 831 CHDFVARCDKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDY 890
+ V C KC SK LT P + D M S +IL +D
Sbjct: 1503 VENCVRTCAKCLCANDHSKLTSS-LTPYRMTFPLEIVACDLMDVGLSVQGNRYILTIIDL 1561
Query: 891 VTKWVEAIPCVANDAKTVV-SFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIR 949
TK+ A+P A+TV+ +F+++ P L++D GK F N L I
Sbjct: 1562 FTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIE 1621
Query: 950 HKVATPYHPQTSAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSP 1009
H Y+ + + VE N+ + I++K A +W ++ A++AY + G +P
Sbjct: 1622 HITTKGYNSRANGAVERFNKTIMHIMKKKTAV-PMEWDDQVVYAVYAYNNCVHENTGETP 1680
Query: 1010 YQLVYGKACHLPVELEHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAYENALIYKA 1069
L++G+ P+E+ + I + D+ K LL EL +++ A E+A+ +
Sbjct: 1681 MFLMHGRDVMGPLEMSGEDAVGINYADMDEY----KHLL-TQELLKVQKIAKEHAMREQE 1735
Query: 1070 RTKRYHDKNLVS---RDINSGQLVLLY--NSRLKLFPGKLKSKWSGPFLVKSVLPHGA 1122
K D+ S R G VLL + +L KL +KWSGP+ V S + A
Sbjct: 1736 SYKSLFDQKYASKKHRFPQPGSRVLLEIPSEKLGAQCPKLVNKWSGPYRVISCSENSA 1793
Score = 92.0 bits (227), Expect = 8e-18
Identities = 64/217 (29%), Positives = 103/217 (46%), Gaps = 21/217 (9%)
Query: 380 EEEKLMRVLRENQGALGWKISDLKGISPAYCMHRIHMEAEYKPVVQPQRRLNPTMKEVVK 439
++ K+ V+ + Q +L S C+ + AE P+ Q R + +K ++
Sbjct: 902 DDRKIWDVIEQFQDVFAISDDELGRNSGTECVIELKEGAE--PIRQKPRPIPLALKPEIR 959
Query: 440 KEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGMTVVANDKNELIPTRTVTGWRMCIDYRR 499
K + K+LN +I S S W SPV +V KK G RMCIDYR+
Sbjct: 960 KMIQKMLNQKVIRE-SKSPWSSPVVLVKKKDGSI------------------RMCIDYRK 1000
Query: 500 LNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTAFTCPFGVFA 559
+N + + PLP ++ ++ LAG+ Y D + + QI + + +E TAF +F
Sbjct: 1001 VNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFE 1060
Query: 560 YRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDD 596
+ +PFGL +PA FQ M I D++ V++DD
Sbjct: 1061 WNVLPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDD 1097
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 129 bits (323), Expect = 6e-29
Identities = 93/360 (25%), Positives = 173/360 (47%), Gaps = 20/360 (5%)
Query: 790 EEAHSIMWHCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDKCQRTGSISK 849
+E +I+ H G H+G T ++ ++W + K ++V +C KCQ+ + +K
Sbjct: 891 KEKEAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKT-TK 949
Query: 850 RNEMPLTGIIEV--EPFDCWGIDFMGPFPSSYS---FLHILVCVDYVTKWVEAIPCVAND 904
+ P+T I E FD +D +GP P S + + L+C +TK++ AIP
Sbjct: 950 HTKTPMT-ITETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICD--LTKYLVAIPIANKS 1006
Query: 905 AKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQV 964
AKTV + ++ ++G + I+D G + N+++ ++ K I++ +T +H QT V
Sbjct: 1007 AKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVV 1066
Query: 965 EVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVEL 1024
E S+R L + + I++++ DW L ++ + T + PY+LV+G+ +LP
Sbjct: 1067 ERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHF 1126
Query: 1025 EHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAYENALIYKARTKRYHDKNLVSRDI 1084
+K + N D A K LE RA + +K + K +D + ++
Sbjct: 1127 -NKLHSIEPIYNIDDYAKESK-----YRLEVAYARARKLLEAHKEKNKENYDLKVKDIEL 1180
Query: 1085 NSGQLVLLYNSRLKLFPGKLKSKWSGPFLVKSVLPHGAVELMTPEGDRSFKVNGQRVKPY 1144
G VLL N KL K++GP+ ++S+ + + L+T + + V+ R+K +
Sbjct: 1181 EVGDKVLLRNE----VGHKLDFKYTGPYKIESIGDNNNITLLTNKNKKQI-VHKDRLKKF 1235
Score = 89.0 bits (219), Expect = 7e-17
Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 421 KPVVQPQRRLNPTMKEVVKKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGMTVVANDKN 480
+PV R + E ++ +V KL+ ++ P S S + SP+ +VPKK +DK
Sbjct: 313 EPVYTKNYRSPHSQVEEIQAQVQKLIKDKIVEP-SVSQYNSPLLLVPKKSSPN---SDKK 368
Query: 481 ELIPTRTVTGWRMCIDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIA 540
+ WR+ IDYR++N D FPLP +D ++++L ++ LD S ++QI
Sbjct: 369 K---------WRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIE 419
Query: 541 VAPEDQEKTAFTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDD 596
+ ++ T+F+ G + + R+PFGL AP +FQR M FS + ++MDD
Sbjct: 420 LDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDD 475
Score = 73.6 bits (179), Expect = 3e-12
Identities = 44/119 (36%), Positives = 65/119 (53%)
Query: 601 VLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHA 660
VL Q N + YAS+ + + N +TTE+EL A+ +A+ FR Y+ G V TDH
Sbjct: 630 VLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHR 689
Query: 661 ALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKKGAIM 719
L YL + + +L R L L+E++ + KG +N VAD LSR+ KE+ G I+
Sbjct: 690 PLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRITIKELKDITGNIL 748
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 124 bits (311), Expect = 1e-27
Identities = 97/351 (27%), Positives = 158/351 (44%), Gaps = 30/351 (8%)
Query: 808 HSGERTTAKVLQSGFWWPTLFKDCHDFVARCDKCQRTGSISKRNEMPLTGIIEVEPFDCW 867
H+G +T + S +WWP L KD + +C +C T + + L V+PFD +
Sbjct: 830 HTGRDSTFLKVSSKYWWPNLRKDVVKVIRQCKQCLVTNAATLAAPPILRPERPVKPFDKF 889
Query: 868 GIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVLI 927
ID++GP P S +LH+LV VD +T +V P A V L N+ T P+V+
Sbjct: 890 FIDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKAL--NMLTSIAVPKVIH 947
Query: 928 SDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEKTIASNRKDWS 987
SD G F + + K I+ + +TPYHPQ+S +VE N +K++L K + W
Sbjct: 948 SDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPAKWY 1007
Query: 988 KKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVELEHKAYWAIKALNFDQLAAGKKRL 1047
L A ++ ++P+QL++G + P N D L ++
Sbjct: 1008 DLLPVVQLALNNSYSPSSKYTPHQLLFGIDSNTPF------------ANSDTLDLSREEE 1055
Query: 1048 LKLNELEEMRLRAYENALIYKARTKRYHDKNLVSRDINSGQLVLLYNSRLKLFPGKLKSK 1107
L L L+E+R + +Y T ++ + + GQLV +R P L+ +
Sbjct: 1056 LSL--LQEIR------SSLYLPSTP---PASIRAWSPSVGQLVQERVAR----PASLRPR 1100
Query: 1108 WSGPFLVKSVLPHGAVELMTPEGD-RSFKVNGQRVKPYLGGDLPKERVGLV 1157
W P V V+ AV ++ G+ R+ V+ ++ Y P E +V
Sbjct: 1101 WHKPTPVLEVINPRAVVILDHLGNRRTVSVDNLKLTAYQKDGTPNESAAVV 1151
Score = 50.4 bits (119), Expect = 3e-05
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 35/182 (19%)
Query: 422 PVVQPQRRLNPTMKEVVKKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGMTVVANDKNE 481
P Q Q +NP K ++ + LL G++ +S +PV+ VPK G
Sbjct: 176 PRPQKQYPINPKAKASIQTVINDLLKQGVLIQ-QNSIMNTPVYPVPKPDGK--------- 225
Query: 482 LIPTRTVTGWRMCIDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIA- 540
WRM +DYR +N +P + + AG F Y ++
Sbjct: 226 ---------WRMVLDYREVNKT-------IPLIAAQNQHSAGILSSIFRGKYKTTLDLSN 269
Query: 541 ------VAPEDQEKTAFTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFM 594
+ PE TAFT + + R+P G +PA F ++ + ++ N++V++
Sbjct: 270 GFWAHSITPESYWLTAFTWLGQQYCWTRLPQGFLNSPALFTADVVDLLKEV--PNVQVYV 327
Query: 595 DD 596
DD
Sbjct: 328 DD 329
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 123 bits (309), Expect = 3e-27
Identities = 69/221 (31%), Positives = 113/221 (50%), Gaps = 2/221 (0%)
Query: 801 SSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDKCQRTGSISKRNEMPLTGIIE 860
S+A+ H+G T + S +WWP L KD + +C +C T + + + L +
Sbjct: 821 STAHNIAHTGRDATFLKVSSKYWWPNLRKDVVKSIRQCKQCLVTNATNLTSPPILRPVKP 880
Query: 861 VEPFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRF 920
++PFD + ID++GP P S +LH+LV VD +T +V P A V L N+ T
Sbjct: 881 LKPFDKFYIDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKAL--NMLTSI 938
Query: 921 GTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEKTIA 980
P+VL SD G F ++ + K+ I+ + +TPYHPQ+S +VE N +K++L K +
Sbjct: 939 AIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLI 998
Query: 981 SNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLP 1021
W L A ++ ++P+QL++G + P
Sbjct: 999 GRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGVDSNTP 1039
Score = 48.1 bits (113), Expect = 1e-04
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 35/182 (19%)
Query: 422 PVVQPQRRLNPTMKEVVKKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGMTVVANDKNE 481
P Q Q +NP K ++ + LL G++ +S+ +PV+ VPK G
Sbjct: 174 PRPQKQYPINPKAKPSIQIVIDDLLKQGVLIQ-QNSTMNTPVYPVPKPDGK--------- 223
Query: 482 LIPTRTVTGWRMCIDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIA- 540
WRM +DYR +N +P + + AG + Y +
Sbjct: 224 ---------WRMVLDYREVNKT-------IPLIAAQNQHSAGILSSIYRGKYKTTLDLTN 267
Query: 541 ------VAPEDQEKTAFTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFM 594
+ PE TAFT + + R+P G +PA F ++ + ++ N++ ++
Sbjct: 268 GFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEI--PNVQAYV 325
Query: 595 DD 596
DD
Sbjct: 326 DD 327
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 116 bits (291), Expect = 3e-25
Identities = 113/436 (25%), Positives = 189/436 (42%), Gaps = 52/436 (11%)
Query: 611 HAIYYAS-KVLNENQV---NYATTEKELLAVIFALEKFRSYLIGSKVIVFTD-------- 658
HA Y +VLN+ + N+ E+ AV FA +K + I V+V TD
Sbjct: 423 HATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKK--ALKIPGPVLVITDSFYVAESA 480
Query: 659 HAALKYLLTKG--DSKPRLLRWI--------LLLQEFDLEIRDKKGVENVVADHLSRLDN 708
+ L Y + G ++K + L+ I L + D+ I+ +KG+ +
Sbjct: 481 NKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGISLQIP-------- 532
Query: 709 KEVTKKKGAIMAEFPDEKLFAIGERPWFADMANFKAGNI---VPDDFEYHQRKKFFKDAN 765
V KG +A+ KL G + N K N+ + + H K + K
Sbjct: 533 --VFILKGNALAD----KLATQGS---YVVNCNTKKPNLDAELDQLLQGHYIKGYPKQYT 583
Query: 766 HYVWDDPYLFKVSTDGLMRRCVAGEEAHSIMWHCHSSAYGGHHSGERTTAKVLQSGFWWP 825
+++ D KVS ++ + I+ H+ A H+G T + + +WWP
Sbjct: 584 YFLEDGKV--KVSRPEGVKIIPPQSDRQKIVLQAHNLA----HTGREATLLKIANLYWWP 637
Query: 826 TLFKDCHDFVARCDKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHIL 885
+ KD + RC +C T + +K + L +PFD + ID++GP P S +L++L
Sbjct: 638 NMRKDVVKQLGRCQQCLITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQGYLYVL 697
Query: 886 VCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKK 945
V VD +T + P A V L N+ T P+V+ SD G F ++ K+
Sbjct: 698 VVVDGMTGFTWLYPTKAPSTSATVKSL--NVLTSIAIPKVIHSDQGAAFTSSTFAEWAKE 755
Query: 946 YNIRHKVATPYHPQTSAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHL 1005
I + +TPYHPQ+ ++VE N +K++L K + W L A + L
Sbjct: 756 RGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVL 815
Query: 1006 GFSPYQLVYGKACHLP 1021
++P+QL++G + P
Sbjct: 816 KYTPHQLLFGIDSNTP 831
Score = 44.3 bits (103), Expect = 0.002
Identities = 32/136 (23%), Positives = 56/136 (40%), Gaps = 20/136 (14%)
Query: 461 SPVHVVPKKGGMTVVANDKNELIPTRTVTGWRMCIDYRRLNSATRKDHFPLPFMDQMIER 520
+PV+ VPK G WRM +DYR +N ++
Sbjct: 3 TPVYPVPKPDGR------------------WRMVLDYREVNKTIPLTAAQNQHSAGILAT 44
Query: 521 LAGQAFYCFLDGYSRYNQIAVAPEDQEKTAFTCPFGVFAYRRMPFGLCGAPATFQRCMLS 580
+ Q + LD + + + PE TAFT + + R+P G +PA F ++
Sbjct: 45 IVRQKYKTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVD 104
Query: 581 IFSDMIEKNIEVFMDD 596
+ ++ N++V++DD
Sbjct: 105 LLKEI--PNVQVYVDD 118
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 108 bits (269), Expect = 1e-22
Identities = 66/179 (36%), Positives = 100/179 (54%), Gaps = 14/179 (7%)
Query: 422 PVVQPQRRLNPTMKEVVKKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGMTVVANDKNE 481
P+ Q L T + V+ +V ++LN G+I S+S + SP VVPKK A+ N+
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRE-SNSPYNSPTWVVPKKPD----ASGANK 260
Query: 482 LIPTRTVTGWRMCIDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAV 541
+R+ IDYR+LN T D +P+P MD+++ +L ++ +D ++QI +
Sbjct: 261 ---------YRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEM 311
Query: 542 APEDQEKTAFTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDFSAF 600
E KTAF+ G + Y RMPFGL APATFQRCM +I ++ K+ V++DD F
Sbjct: 312 DEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIF 370
Score = 90.5 bits (223), Expect = 2e-17
Identities = 103/456 (22%), Positives = 184/456 (39%), Gaps = 58/456 (12%)
Query: 592 VFMDDFSAFVLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGS 651
V D S LG ++ H I + S+ LN++++NY+ EKELLA+++A + FR YL+G
Sbjct: 509 VLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGR 568
Query: 652 KVIVFTDHAALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEV 711
+ ++ +DH L++L + +L RW + L E+ +I KG EN VAD LSR+ +E
Sbjct: 569 QFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIEEN 628
Query: 712 TKKKGA-IMAEFPDEKLFAIGERP--WFADMANF-------------------------- 742
+ AE + L + E+P +F F
Sbjct: 629 HHSEATQHSAEEDNSNLIHLTEKPINYFKKQIIFIKSDKNKVEHSKIFGNSITTIQYDVM 688
Query: 743 ---KAGNIVPDDFEYHQRKKFFKD---------ANHYVWDDPYLFKVSTDGLMRRCVAGE 790
KA I+ D F + + + A+ + + Y + + L++ +
Sbjct: 689 TLEKAKQILLDHFIHRNITIYIESDVDFEIVQRAHIEIVNTTYTKVIRSLFLLKNVGSYA 748
Query: 791 EAHSIMWHCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDKCQRTGSISKR 850
E I+ H H G + K+ + ++P + + C+ C + +
Sbjct: 749 EFKEIILQSHEKLL---HPGIQKMTKLFKENHFFPNSQLLIQNIINECNICNLAKTEHRN 805
Query: 851 NEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVS 910
+MPL I P C + + S H + C+D +K+ D +
Sbjct: 806 TKMPLK--ITPNPEHCREKFVVDIYSSEGK--HYISCIDIYSKFATLEQIKTKDWIECRN 861
Query: 911 FLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQ 970
L + IF + G P++L +D F + L+ L++ + ++ T + + R
Sbjct: 862 ALMR-IFNQLGKPKLLKADRDGAFSSLALKRWLEEEEVELQLNTAKNGVADVE-----RL 915
Query: 971 LKQILEKTIASNRKDWSK----KLDDALWAYRTAFK 1002
K I EK N D + K++ L+ Y K
Sbjct: 916 HKTINEKIRIINSSDDEEVKLSKIETILYTYNQKIK 951
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 105 bits (263), Expect = 5e-22
Identities = 62/166 (37%), Positives = 95/166 (56%), Gaps = 14/166 (8%)
Query: 435 KEVVKKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGMTVVANDKNELIPTRTVTGWRMC 494
++ V+ ++ +LN G+I S+S + SP+ VVPKK A+ K + +R+
Sbjct: 220 EQEVESQIQDMLNQGIIRT-SNSPYNSPIWVVPKKQD----ASGKQK---------FRIV 265
Query: 495 IDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTAFTCP 554
IDYR+LN T D P+P MD+++ +L ++ +D ++QI + PE KTAF+
Sbjct: 266 IDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTK 325
Query: 555 FGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDFSAF 600
G + Y RMPFGL APATFQRCM I ++ K+ V++DD F
Sbjct: 326 HGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVF 371
Score = 100 bits (248), Expect = 3e-20
Identities = 99/399 (24%), Positives = 165/399 (40%), Gaps = 48/399 (12%)
Query: 596 DFSAFVLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIV 655
D S LG ++ H + Y S+ LNE+++NY+T EKELLA+++A + FR YL+G +
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEI 573
Query: 656 FTDHAALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEV-TKK 714
+DH L +L D +L RW + L EFD +I+ KG EN VAD LSR+ +E +
Sbjct: 574 SSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSE 633
Query: 715 KGAIMAEFPDEKLFAIGERP------------------------------WFADMANFKA 744
+ AE + L I ERP ++ M KA
Sbjct: 634 QTQHSAEEDNSDLIFITERPLNTFNRQVIFSKGPPDIKVTKYFKKHITQIFYDIMTREKA 693
Query: 745 GNIVPDDFEYHQRKKFFK-DANHYVWDDPYLFKVSTDG--------LMRRCVAGEEAHSI 795
+ D F + + + DA+ V + ++T L++ E +
Sbjct: 694 EQYLIDHFCGKKSALYIESDADFEVIQAAHKLAINTKYTKILRSTILLKNITTYAEFKEL 753
Query: 796 MWHCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDKCQRTGSISKRNEMPL 855
+ H H G + T K+ +++P + + C C + + +MP
Sbjct: 754 ILTAHEKLL---HPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAKTEHRNTDMPT 810
Query: 856 TGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKN 915
+P C FM SS H + C+D +K+ D + L +
Sbjct: 811 K--TTPKPEHC-REKFMIDIYSSEG-KHYVSCIDIYSKFATLEEIKTKDWIECKNALMR- 865
Query: 916 IFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVAT 954
IF + G P++L +D F + L+ L+ + ++ T
Sbjct: 866 IFNQLGKPKLLKADRDGAFSSLALKRWLESEEVELQLNT 904
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 104 bits (260), Expect = 1e-21
Identities = 80/255 (31%), Positives = 118/255 (45%), Gaps = 20/255 (7%)
Query: 867 WGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVL 926
W IDF P Y + ++LV VD + WVEA P AK V L + IF RFG P+VL
Sbjct: 298 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVL 357
Query: 927 ISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEK-TIASNRKD 985
+D G F + + ++V K I K+ Y PQ+S QVE NR +K+ L K T+A+ +D
Sbjct: 358 GTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRD 417
Query: 986 WSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVELEHKAYWAIKALNFDQLAAGKK 1045
W L AL+ R H G +PY+++YG P + K N L A +
Sbjct: 418 WVLLLPLALYRARNTPGPH-GLTPYEILYGAP---PPLVNFHDPEMSKFTNSPSLQAHLQ 473
Query: 1046 RLLKL-NELEEMRLRAYENALIYKARTKRYHDKNLVSRDINSGQLVLLYNSRLKLFPGKL 1104
L + E+ + AY++ L D+ ++ G V + + K L
Sbjct: 474 ALQAVQREVWKPLAAAYQDQL----------DQPVIPHPFRVGDTVWVRRHQTK----NL 519
Query: 1105 KSKWSGPFLVKSVLP 1119
+ +W GP+ V P
Sbjct: 520 EPRWKGPYTVLLTTP 534
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 104 bits (260), Expect = 1e-21
Identities = 80/255 (31%), Positives = 118/255 (45%), Gaps = 20/255 (7%)
Query: 867 WGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVL 926
W IDF P Y + ++LV VD + WVEA P AK V L + IF RFG P+VL
Sbjct: 913 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVL 972
Query: 927 ISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEK-TIASNRKD 985
+D G F + + ++V K I K+ Y PQ+S QVE NR +K+ L K T+A+ +D
Sbjct: 973 GTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRD 1032
Query: 986 WSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVELEHKAYWAIKALNFDQLAAGKK 1045
W L AL+ R H G +PY+++YG P + K N L A +
Sbjct: 1033 WVLLLPLALYRARNTPGPH-GLTPYEILYGAP---PPLVNFHDPEMSKFTNSPSLQAHLQ 1088
Query: 1046 RLLKL-NELEEMRLRAYENALIYKARTKRYHDKNLVSRDINSGQLVLLYNSRLKLFPGKL 1104
L + E+ + AY++ L D+ ++ G V + + K L
Sbjct: 1089 ALQAVQREVWKPLAAAYQDQL----------DQPVIPHPFRVGDTVWVRRHQTK----NL 1134
Query: 1105 KSKWSGPFLVKSVLP 1119
+ +W GP+ V P
Sbjct: 1135 EPRWKGPYTVLLTTP 1149
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonuclease)
(Fragment)
Length = 390
Score = 104 bits (260), Expect = 1e-21
Identities = 80/255 (31%), Positives = 118/255 (45%), Gaps = 20/255 (7%)
Query: 867 WGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVL 926
W IDF P Y + ++LV VD + WVEA P AK V L + IF RFG P+VL
Sbjct: 122 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVL 181
Query: 927 ISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEK-TIASNRKD 985
+D G F + + ++V K I K+ Y PQ+S QVE NR +K+ L K T+A+ +D
Sbjct: 182 GTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRD 241
Query: 986 WSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVELEHKAYWAIKALNFDQLAAGKK 1045
W L AL+ R H G +PY+++YG P + K N L A +
Sbjct: 242 WVLLLPLALYRARNTPGPH-GLTPYEILYGAP---PPLVNFHDPEMSKFTNSPSLQAHLQ 297
Query: 1046 RLLKL-NELEEMRLRAYENALIYKARTKRYHDKNLVSRDINSGQLVLLYNSRLKLFPGKL 1104
L + E+ + AY++ L D+ ++ G V + + K L
Sbjct: 298 ALQAVQREVWKPLAAAYQDQL----------DQPVIPHPFRVGDTVWVRRHQTK----NL 343
Query: 1105 KSKWSGPFLVKSVLP 1119
+ +W GP+ V P
Sbjct: 344 EPRWKGPYTVLLTTP 358
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 103 bits (258), Expect = 2e-21
Identities = 86/289 (29%), Positives = 125/289 (42%), Gaps = 21/289 (7%)
Query: 833 DFVARCDKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVT 892
D C C + + SK T + P W IDF P Y + ++LV VD +
Sbjct: 885 DITETCKACAQVNA-SKSAVKQGTRVRGHRPGTHWEIDFTEVKPGLYGYKYLLVFVDTFS 943
Query: 893 KWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKV 952
WVEA P AK V L + IF RFG P+VL +D G F + + + V + K+
Sbjct: 944 GWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKL 1003
Query: 953 ATPYHPQTSAQVEVSNRQLKQILEK-TIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQ 1011
Y PQ+S QVE NR +K+ L K T+A+ +DW L AL+ R H G +PY+
Sbjct: 1004 HCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNTPGPH-GLTPYE 1062
Query: 1012 LVYGKACHLPVELEHKAYWAIKALNFDQLAAGKKRL-LKLNELEEMRLRAYENALIYKAR 1070
++YG P + K + L A + L L +E+ AY+ L
Sbjct: 1063 ILYGAP---PPLVNFPDPDMAKVTHNPSLQAHLQALYLVQHEVWRPLAAAYQEQL----- 1114
Query: 1071 TKRYHDKNLVSRDINSGQLVLLYNSRLKLFPGKLKSKWSGPFLVKSVLP 1119
D+ +V G V + + K L+ +W GP+ V P
Sbjct: 1115 -----DRPVVPHPFRVGDTVWVRRHQTK----NLEPRWKGPYTVLLTTP 1154
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 103 bits (258), Expect = 2e-21
Identities = 85/289 (29%), Positives = 125/289 (42%), Gaps = 21/289 (7%)
Query: 833 DFVARCDKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVT 892
D C C + + SK T + P W IDF P Y + ++LV +D +
Sbjct: 885 DITETCQACAQVNA-SKSAVKQGTRVRGHRPGTHWEIDFTEVKPGLYGYKYLLVFIDTFS 943
Query: 893 KWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKV 952
WVEA P AK V L + IF RFG P+VL +D G F + + + V + K+
Sbjct: 944 GWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKL 1003
Query: 953 ATPYHPQTSAQVEVSNRQLKQILEK-TIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQ 1011
Y PQ+S QVE NR +K+ L K T+A+ +DW L AL+ R H G +PY+
Sbjct: 1004 HCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNTPGPH-GLTPYE 1062
Query: 1012 LVYGKACHLPVELEHKAYWAIKALNFDQLAAGKKRL-LKLNELEEMRLRAYENALIYKAR 1070
++YG P + K + L A + L L +E+ AY+ L
Sbjct: 1063 ILYGAP---PPLVNFPDPDMAKVTHNPSLQAHLQALYLVQHEVWRPLAAAYQEQL----- 1114
Query: 1071 TKRYHDKNLVSRDINSGQLVLLYNSRLKLFPGKLKSKWSGPFLVKSVLP 1119
D+ +V G V + + K L+ +W GP+ V P
Sbjct: 1115 -----DRPVVPHPFRVGDTVWVRRHQTK----NLEPRWKGPYTVLLTTP 1154
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 103 bits (258), Expect = 2e-21
Identities = 86/289 (29%), Positives = 125/289 (42%), Gaps = 21/289 (7%)
Query: 833 DFVARCDKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVT 892
D C C + + SK T + P W IDF P Y + ++LV VD +
Sbjct: 885 DITETCKACAQVNA-SKSAVKQGTRVRGHRPGTHWEIDFTEVKPGLYGYKYLLVFVDTFS 943
Query: 893 KWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKV 952
WVEA P AK V L + IF RFG P+VL +D G F + + + V + K+
Sbjct: 944 GWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKL 1003
Query: 953 ATPYHPQTSAQVEVSNRQLKQILEK-TIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQ 1011
Y PQ+S QVE NR +K+ L K T+A+ +DW L AL+ R H G +PY+
Sbjct: 1004 HCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNTPGPH-GLTPYE 1062
Query: 1012 LVYGKACHLPVELEHKAYWAIKALNFDQLAAGKKRL-LKLNELEEMRLRAYENALIYKAR 1070
++YG P + K + L A + L L +E+ AY+ L
Sbjct: 1063 ILYGAP---PPLVNFPDPDMAKVTHNPSLQAHLQALYLVQHEVWRPLAAAYQEQL----- 1114
Query: 1071 TKRYHDKNLVSRDINSGQLVLLYNSRLKLFPGKLKSKWSGPFLVKSVLP 1119
D+ +V G V + + K L+ +W GP+ V P
Sbjct: 1115 -----DRPVVPHPFRVGDTVWVRRHQTK----NLEPRWKGPYTVLLTTP 1154
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 102 bits (254), Expect = 6e-21
Identities = 84/284 (29%), Positives = 124/284 (43%), Gaps = 21/284 (7%)
Query: 838 CDKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEA 897
C C + + SK T + P W IDF P Y + ++LV +D + W+EA
Sbjct: 885 CKACAQVNA-SKSAVKQGTRVRGHRPGTHWEIDFTEIKPGLYGYKYLLVFIDTFSGWIEA 943
Query: 898 IPCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYH 957
P AK V L + IF RFG P+VL +D G F + + + V I K+ Y
Sbjct: 944 FPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYR 1003
Query: 958 PQTSAQVEVSNRQLKQILEK-TIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGK 1016
PQ+S QVE NR +K+ L K T+A+ +DW L AL+ R H G +PY+++YG
Sbjct: 1004 PQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNTPGPH-GLTPYEILYGA 1062
Query: 1017 ACHLPVELEHKAYWAIKALNFDQLAAGKKRL-LKLNELEEMRLRAYENALIYKARTKRYH 1075
P + + N L A + L L +E+ AY+ L
Sbjct: 1063 P---PPLVNFPDPDMTRVTNSPSLQAHLQALYLVQHEVWRPLAAAYQEQL---------- 1109
Query: 1076 DKNLVSRDINSGQLVLLYNSRLKLFPGKLKSKWSGPFLVKSVLP 1119
D+ +V G V + + K L+ +W GP+ V P
Sbjct: 1110 DRPVVPHPYRVGDTVWVRRHQTK----NLEPRWKGPYTVLLTTP 1149
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 101 bits (251), Expect = 1e-20
Identities = 60/154 (38%), Positives = 83/154 (52%), Gaps = 2/154 (1%)
Query: 863 PFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGT 922
P W IDF P Y + ++LV VD + WVEA P A+ V L + IF RFG
Sbjct: 909 PGSHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGM 968
Query: 923 PRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEK-TIAS 981
P+VL SD G F + + ++V I K+ Y PQ+S QVE NR +K+ L K T+A+
Sbjct: 969 PQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAA 1028
Query: 982 NRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYG 1015
+DW L AL+ R H G +PY+++YG
Sbjct: 1029 GTRDWVLLLPLALYRARNTPGPH-GLTPYEILYG 1061
>POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 282
Score = 99.0 bits (245), Expect = 7e-20
Identities = 78/253 (30%), Positives = 114/253 (44%), Gaps = 20/253 (7%)
Query: 869 IDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVLIS 928
IDF P Y + ++LV VD + W+EA P AK V L + IF RFG P+VL +
Sbjct: 1 IDFTEVKPRLYGYKYLLVFVDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGT 60
Query: 929 DGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEK-TIASNRKDWS 987
D G F + + + V I K+ Y PQ+S QVE NR +K+ L K T+A+ +DW
Sbjct: 61 DNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWV 120
Query: 988 KKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVELEHKAYWAIKALNFDQLAAGKKRL 1047
L AL+ R H G +PY+++YG P + + N L A + L
Sbjct: 121 LLLPLALYRARNTPGPH-GLTPYEILYGAP---PPLVNFPDPDMTRVTNSPSLQAHLQAL 176
Query: 1048 -LKLNELEEMRLRAYENALIYKARTKRYHDKNLVSRDINSGQLVLLYNSRLKLFPGKLKS 1106
L +E+ AY+ L D+ +V G V + + K L+
Sbjct: 177 YLVQHEVWRPLAAAYQEQL----------DRPVVPHPYRVGDTVWVRRHQTK----NLEP 222
Query: 1107 KWSGPFLVKSVLP 1119
+W GP+ V P
Sbjct: 223 RWKGPYTVLLTTP 235
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 97.8 bits (242), Expect = 1e-19
Identities = 60/154 (38%), Positives = 83/154 (52%), Gaps = 3/154 (1%)
Query: 863 PFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGT 922
P W IDF P Y + ++LV VD + WVEA P A+ V L + IF RFG
Sbjct: 557 PGSHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGM 616
Query: 923 PRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEK-TIAS 981
P+VL SD G F + + ++V I K+ Y PQ+S QVE NR +K+ L K T+A+
Sbjct: 617 PQVLGSDNGPAFTSQVSQSVADLLGI-DKLHCAYRPQSSGQVERMNRTIKETLTKLTLAA 675
Query: 982 NRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYG 1015
+DW L AL+ R H G +PY+++YG
Sbjct: 676 GTRDWVLLLPLALYRARNTPGPH-GLTPYEILYG 708
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 95.9 bits (237), Expect = 6e-19
Identities = 88/321 (27%), Positives = 133/321 (41%), Gaps = 35/321 (10%)
Query: 807 HHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDKCQRTGSISKRNEMPLTGIIEV--EPF 864
H E+ V ++ P L + ++C C T +++ E TG + P
Sbjct: 821 HLGPEKLLQLVNRTSLLIPNLQSAVREVTSQCQACAMTNAVTTYRE---TGKRQRGDRPG 877
Query: 865 DCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPR 924
W +DF P Y ++LV +D + WVEA P A V + + I RFG P+
Sbjct: 878 VYWEVDFTEIKPGRYGNKYLLVFIDTFSGWVEAFPTKTETALIVCKKILEEILPRFGIPK 937
Query: 925 VLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEK-TIASNR 983
VL SD G F + + + + I K+ Y PQ+S QVE NR +K+ L K + +
Sbjct: 938 VLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGG 997
Query: 984 KDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVELEHKAYWAIKALNFDQLAAG 1043
KDW L AL R G +PY+++YG P LE + + L
Sbjct: 998 KDWVTLLPLALLRARNT-PGRFGLTPYEILYGGP---PPILE----------SGETLGPD 1043
Query: 1044 KKRL----LKLNELEEMRLRAYENAL-IYKARTKRYHDKNLVSRDINSGQLVLLYNSRLK 1098
+ L L LE +R + ++ +YK T + G VL+ R
Sbjct: 1044 DRFLPVLFTHLKALEIVRTQIWDQIKEVYKPGTV------TIPHPFQVGDQVLVRRHR-- 1095
Query: 1099 LFPGKLKSKWSGPFLVKSVLP 1119
P L+ +W GP+LV P
Sbjct: 1096 --PSSLEPRWKGPYLVLLTTP 1114
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 94.0 bits (232), Expect = 2e-18
Identities = 54/150 (36%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 867 WGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVL 926
W IDF P + ++LV VD + WVEA P A V + + IF RFG P+V+
Sbjct: 765 WEIDFTEVKPHYAGYKYLLVFVDTFSGWVEAYPTRQETAHMVAKKILEEIFPRFGLPKVI 824
Query: 927 ISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEK-TIASNRKD 985
SD G F + + + + + I K+ Y PQ+S QVE NR +K+ L K T+ + KD
Sbjct: 825 GSDNGPAFVSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKD 884
Query: 986 WSKKLDDALWAYRTAFKTHLGFSPYQLVYG 1015
W + L AL R G +PY+++YG
Sbjct: 885 WRRLLSLALLRARNT-PNRFGLTPYEILYG 913
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 93.6 bits (231), Expect = 3e-18
Identities = 54/150 (36%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 867 WGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVL 926
W IDF P + ++LV VD + WVEA P A V + + IF RFG P+V+
Sbjct: 908 WEIDFTEVKPHYAGYKYLLVFVDTFSGWVEAFPTRQETAHIVAKKILEEIFPRFGLPKVI 967
Query: 927 ISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEK-TIASNRKD 985
SD G F + + + + + I K+ Y PQ+S QVE NR +K+ L K T+ + KD
Sbjct: 968 GSDNGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKD 1027
Query: 986 WSKKLDDALWAYRTAFKTHLGFSPYQLVYG 1015
W + L AL R G +PY+++YG
Sbjct: 1028 WRRLLSLALLRARNT-PNRFGLTPYEILYG 1056
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,657,513
Number of Sequences: 164201
Number of extensions: 6301851
Number of successful extensions: 15833
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 15506
Number of HSP's gapped (non-prelim): 286
length of query: 1161
length of database: 59,974,054
effective HSP length: 121
effective length of query: 1040
effective length of database: 40,105,733
effective search space: 41709962320
effective search space used: 41709962320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC148291.6