BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148291.4 + phase: 0 /pseudo
(659 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 321 4e-87
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 321 4e-87
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 321 4e-87
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 191 4e-48
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 176 1e-43
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 173 1e-42
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 150 1e-35
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 147 1e-34
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 130 1e-29
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 99 4e-20
M860_ARATH (P92523) Hypothetical mitochondrial protein AtMg00860... 97 2e-19
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 91 7e-18
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 90 2e-17
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 86 4e-16
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 82 3e-15
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 82 3e-15
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 81 1e-14
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 76 3e-13
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 76 3e-13
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 76 3e-13
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 321 bits (822), Expect = 4e-87
Identities = 202/655 (30%), Positives = 335/655 (50%), Gaps = 32/655 (4%)
Query: 7 SKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIEG 66
+KCEF S+V F+G+ I +D V QW+ K+ E+R FLG Y R+FI
Sbjct: 599 AKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPK 658
Query: 67 FSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLG 126
S+L P L K + W ++ +K+ L PVL + ++ DAS +
Sbjct: 659 TSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVA 718
Query: 127 LGGVLMQ---DGKV--VAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVF 181
+G VL Q D K V Y S ++ + NY D E+ A++ LK WRHYL + +
Sbjct: 719 VGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLEST---IE 775
Query: 182 RFEVFSDHKSL--KYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLH 239
F++ +DH++L + + + N R RW L+D++F +NY PG AN +ADALSR
Sbjct: 776 PFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR---- 831
Query: 240 MSALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKIDSDFLNSIREAQKVDLKFVDLMTS 299
+V E E + + + ++F + + I DF N + D K ++L+ +
Sbjct: 832 ----IVDETEPIPKDSEDN---SINF----VNQISITDDFKNQVVTEYTNDTKLLNLLNN 880
Query: 300 GNDTEDSDFKVDDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKL 359
+ + + ++ D ++ + ++ +P++ +L + I+++ H+ IHPG + + + +
Sbjct: 881 EDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRR 940
Query: 360 FWWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPR 419
F W G+++ + ++V C CQ +K + KP G L P+ E W+S+SMDF+T+LP +
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS- 999
Query: 420 GHDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRF 479
G++A++VVVDR +K A +P + Q A ++ V+ G P I++D D FTS+
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 480 WKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYN 539
WK ++ S Y PQTDGQ+ERT Q++E LLR W H+ L++ +YN
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYN 1119
Query: 540 NSYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSR 599
N+ HS+ M PFE ++ R L E + ET + + ++E + + +
Sbjct: 1120 NAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIK 1177
Query: 600 QKSYHDKRRKEL-EFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISDRVG 653
K Y D + +E+ EFQ GD V ++ T G KS KL P F GP+ + + G
Sbjct: 1178 MKKYFDMKIQEIEEFQPGDLVMVK---RTKTGFLHKSNKLAPSFAGPFYVLQKSG 1229
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 321 bits (822), Expect = 4e-87
Identities = 202/655 (30%), Positives = 335/655 (50%), Gaps = 32/655 (4%)
Query: 7 SKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIEG 66
+KCEF S+V F+G+ I +D V QW+ K+ E+R FLG Y R+FI
Sbjct: 599 AKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPK 658
Query: 67 FSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLG 126
S+L P L K + W ++ +K+ L PVL + ++ DAS +
Sbjct: 659 TSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVA 718
Query: 127 LGGVLMQ---DGKV--VAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVF 181
+G VL Q D K V Y S ++ + NY D E+ A++ LK WRHYL + +
Sbjct: 719 VGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLEST---IE 775
Query: 182 RFEVFSDHKSL--KYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLH 239
F++ +DH++L + + + N R RW L+D++F +NY PG AN +ADALSR
Sbjct: 776 PFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR---- 831
Query: 240 MSALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKIDSDFLNSIREAQKVDLKFVDLMTS 299
+V E E + + + ++F + + I DF N + D K ++L+ +
Sbjct: 832 ----IVDETEPIPKDSEDN---SINF----VNQISITDDFKNQVVTEYTNDTKLLNLLNN 880
Query: 300 GNDTEDSDFKVDDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKL 359
+ + + ++ D ++ + ++ +P++ +L + I+++ H+ IHPG + + + +
Sbjct: 881 EDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRR 940
Query: 360 FWWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPR 419
F W G+++ + ++V C CQ +K + KP G L P+ E W+S+SMDF+T+LP +
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS- 999
Query: 420 GHDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRF 479
G++A++VVVDR +K A +P + Q A ++ V+ G P I++D D FTS+
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 480 WKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYN 539
WK ++ S Y PQTDGQ+ERT Q++E LLR W H+ L++ +YN
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYN 1119
Query: 540 NSYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSR 599
N+ HS+ M PFE ++ R L E + ET + + ++E + + +
Sbjct: 1120 NAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIK 1177
Query: 600 QKSYHDKRRKEL-EFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISDRVG 653
K Y D + +E+ EFQ GD V ++ T G KS KL P F GP+ + + G
Sbjct: 1178 MKKYFDMKIQEIEEFQPGDLVMVK---RTKTGFLHKSNKLAPSFAGPFYVLQKSG 1229
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 321 bits (822), Expect = 4e-87
Identities = 202/655 (30%), Positives = 335/655 (50%), Gaps = 32/655 (4%)
Query: 7 SKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIEG 66
+KCEF S+V F+G+ I +D V QW+ K+ E+R FLG Y R+FI
Sbjct: 599 AKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPK 658
Query: 67 FSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLG 126
S+L P L K + W ++ +K+ L PVL + ++ DAS +
Sbjct: 659 TSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVA 718
Query: 127 LGGVLMQ---DGKV--VAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVF 181
+G VL Q D K V Y S ++ + NY D E+ A++ LK WRHYL + +
Sbjct: 719 VGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLEST---IE 775
Query: 182 RFEVFSDHKSL--KYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLH 239
F++ +DH++L + + + N R RW L+D++F +NY PG AN +ADALSR
Sbjct: 776 PFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR---- 831
Query: 240 MSALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKIDSDFLNSIREAQKVDLKFVDLMTS 299
+V E E + + + ++F + + I DF N + D K ++L+ +
Sbjct: 832 ----IVDETEPIPKDSEDN---SINF----VNQISITDDFKNQVVTEYTNDTKLLNLLNN 880
Query: 300 GNDTEDSDFKVDDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKL 359
+ + + ++ D ++ + ++ +P++ +L + I+++ H+ IHPG + + + +
Sbjct: 881 EDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRR 940
Query: 360 FWWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPR 419
F W G+++ + ++V C CQ +K + KP G L P+ E W+S+SMDF+T+LP +
Sbjct: 941 FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS- 999
Query: 420 GHDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRF 479
G++A++VVVDR +K A +P + Q A ++ V+ G P I++D D FTS+
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1059
Query: 480 WKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYN 539
WK ++ S Y PQTDGQ+ERT Q++E LLR W H+ L++ +YN
Sbjct: 1060 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYN 1119
Query: 540 NSYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSR 599
N+ HS+ M PFE ++ R L E + ET + + ++E + + +
Sbjct: 1120 NAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIK 1177
Query: 600 QKSYHDKRRKEL-EFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISDRVG 653
K Y D + +E+ EFQ GD V ++ T G KS KL P F GP+ + + G
Sbjct: 1178 MKKYFDMKIQEIEEFQPGDLVMVK---RTKTGFLHKSNKLAPSFAGPFYVLQKSG 1229
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 191 bits (486), Expect = 4e-48
Identities = 175/675 (25%), Positives = 304/675 (44%), Gaps = 47/675 (6%)
Query: 5 KLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFI 64
+ SKC EV +LGH + + K D + Q+ +V E++SFLGL GYYR+FI
Sbjct: 1127 RASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFI 1186
Query: 65 EGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILP------KPEEPFVV 118
F+++A T L +++W+ + E +F ELK+ + PVL P K + PF++
Sbjct: 1187 LNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMI 1246
Query: 119 YCDASKLGLGGVLMQDG-----KVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYL 173
Y DAS+ G+G VL Q+G +A+AS+ L E Y DLE A++F L+ ++ +
Sbjct: 1247 YTDASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTII 1306
Query: 174 YGSRFEVFRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADAL 233
YG+ VF+DHK L L L R RW + ++D + Y G AN VADAL
Sbjct: 1307 YGT-----AITVFTDHKPLISLLKGSPLADRLWRWSIEILEFDVKIVYLAGKANAVADAL 1361
Query: 234 SRKTLHMSALMVKEFELLEHFRD--MSLVCELSFQSIHLGMLKIDSDFLNSIREAQKVDL 291
SR + L ++ + L + + + ++ S L LK + + + A +
Sbjct: 1362 SRGGCPPNELEEEQTKELTSIVNAIQTELPDILDSSCWLERLKGEDEGWKEVIAALEGGK 1421
Query: 292 KFVDLMTSGNDTEDS-DFKVDDQGVLR-----FRGKVCIPDNEELKKLILEESHKSRLSI 345
G ++E S ++ GVL+ + + +P E+++ +L+E H+ L+
Sbjct: 1422 TKGTFKIVGIESEISLEYYKIVGGVLKNTEIEEQSRSVVP--EKIRTPLLKELHEGMLAG 1479
Query: 346 HPGATKMYHDLKKLFWWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDS 405
H G KM+ + + F+W ++ V V C C + +H K LTP + + +
Sbjct: 1480 HFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCAN-DHSKLTSSLTPYRM-TFPLEI 1537
Query: 406 ISMDFVTSLPNTPRGHDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPA 465
++ D + + + +G+ I ++D TK +PI L + +P
Sbjct: 1538 VACDLM-DVGLSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPL 1596
Query: 466 SIVSDRDPRFTSRFWKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGG 525
+++D+ F + + + L + + Y+ + +G ER +++ +++
Sbjct: 1597 KLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVP-M 1655
Query: 526 AWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRTPLCWFESGESVV---------LGP 576
WD + + YNN H + G P ++GR PL SGE V
Sbjct: 1656 EWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPL--EMSGEDAVGINYADMDEYKH 1713
Query: 577 DLVHETTEKVRLIRERMKASQSRQKSYHDKR---RKELEFQEGDHVFLRVTPLTGVGRAL 633
L E + ++ +E Q KS D++ +K Q G V L + P +G
Sbjct: 1714 LLTQELLKVQKIAKEHAMREQESYKSLFDQKYASKKHRFPQPGSRVLLEI-PSEKLG--A 1770
Query: 634 KSRKLTPKFIGPYQI 648
+ KL K+ GPY++
Sbjct: 1771 QCPKLVNKWSGPYRV 1785
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 176 bits (447), Expect = 1e-43
Identities = 151/561 (26%), Positives = 248/561 (43%), Gaps = 73/561 (13%)
Query: 2 LYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYR 61
L +L KCEF E +FLGH++ I +P K++A+ ++ EI++FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453
Query: 62 RFIEGFSKLALPSTQLTCKG-KSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYC 120
+FI F+ +A P T+ K K + + + +F +LK ++ P+L +P + F +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513
Query: 121 DASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEV 180
DAS + LG VL QDG ++Y SR L HE NY T + EL A+V+ K +RHYL G
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGR---- 569
Query: 181 FRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHM 240
FE+ SDH+ L +L+ K+ N + RW L ++DF + Y G N VADALSR L
Sbjct: 570 -HFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEE 628
Query: 241 SALMVK-EFELLEHFRDMSLVCELSFQSIHLGM--------LKIDSDFLNSIRE------ 285
+ L + + E D+ + E + + + +K+ F I +
Sbjct: 629 TYLSEQTQHSAEEDNSDLIFITERPLNTFNRQVIFSKGPPDIKVTKYFKKHITQIFYDIM 688
Query: 286 -AQKVDLKFVDLMTSGNDT----EDSDFKV---------DDQGVLRFRGKVC---IPDNE 328
+K + +D D+DF+V + + R + I
Sbjct: 689 TREKAEQYLIDHFCGKKSALYIESDADFEVIQAAHKLAINTKYTKILRSTILLKNITTYA 748
Query: 329 ELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVAQFVYACLICQKSKVEHQK 388
E K+LIL K +HPG K + +++ + + + C IC +K EH+
Sbjct: 749 EFKELILTAHEK---LLHPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAKTEHRN 805
Query: 389 PAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDRLTKSAHFIP-ININYPVA 447
PE + +D +S + H++ I+I A
Sbjct: 806 TDMPTKTTPKPEHCREKFMIDIYSS-------------------EGKHYVSCIDIYSKFA 846
Query: 448 QLAEIYIHSVVKLH----------GVPASIVSDRDPRFTSRFWKRLQDALGSKLRLSSAY 497
L EI ++ G P + +DRD F+S KR ++ +L+L++
Sbjct: 847 TLEEIKTKDWIECKNALMRIFNQLGKPKLLKADRDGAFSSLALKRWLESEEVELQLNTTK 906
Query: 498 HPQTDGQSERTIQSLEDLLRV 518
D ER +++ + +R+
Sbjct: 907 TGVAD--IERLHKTINEKIRI 925
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 173 bits (438), Expect = 1e-42
Identities = 172/602 (28%), Positives = 263/602 (43%), Gaps = 88/602 (14%)
Query: 2 LYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYR 61
L +L KCEF E +FLGHI+ I +P KV A+ + EIR+FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452
Query: 62 RFIEGFSKLALPSTQLTCKGKSFVWDAQ---CERSFNELKRRLTIAPVLILPKPEEPFVV 118
+FI ++ +A P T +C K D Q +F +LK + P+L LP E+ FV+
Sbjct: 453 KFIPNYADIAKPMT--SCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVL 510
Query: 119 YCDASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRF 178
DAS L LG VL Q+G +++ SR L HE NY + EL A+V+ K +RHYL G
Sbjct: 511 TTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGR-- 568
Query: 179 EVFRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTL 238
+F + SDH+ L++L + KE + RW L +Y F ++Y G N VADALSR +
Sbjct: 569 ---QFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKI 625
Query: 239 HMSALMVKEFELLEHF--RDMSLVCELSFQSIHL---GMLKIDSD---------FLNSIR 284
+ E +H D S + L+ + I+ ++ I SD F NSI
Sbjct: 626 EEN----HHSEATQHSAEEDNSNLIHLTEKPINYFKKQIIFIKSDKNKVEHSKIFGNSIT 681
Query: 285 EAQ-------KVDLKFVDLMTSGNDTEDSDFKVDDQGVLRFRGKVC-------------- 323
Q K +D N T + VD + V R ++
Sbjct: 682 TIQYDVMTLEKAKQILLDHFIHRNITIYIESDVDFEIVQRAHIEIVNTTYTKVIRSLFLL 741
Query: 324 --IPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVAQFVYACLICQK 381
+ E K++IL+ K +HPG KM K+ ++ + + + C IC
Sbjct: 742 KNVGSYAEFKEIILQSHEK---LLHPGIQKMTKLFKENHFFPNSQLLIQNIINECNICNL 798
Query: 382 SKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDRLTKSAHFIP-I 440
+K EH+ L PE + +D +S + H+I I
Sbjct: 799 AKTEHRNTKMPLKITPNPEHCREKFVVDIYSS-------------------EGKHYISCI 839
Query: 441 NINYPVAQLAEIYIHSVVKLH----------GVPASIVSDRDPRFTSRFWKRLQDALGSK 490
+I A L +I ++ G P + +DRD F+S KR + +
Sbjct: 840 DIYSKFATLEQIKTKDWIECRNALMRIFNQLGKPKLLKADRDGAFSSLALKRWLEEEEVE 899
Query: 491 LRLSSAYHPQTDGQSERTIQSLEDLLRVC-VLEQGGAWDSHLPLIEFTYNNSY-HSSIGM 548
L+L++A + D ER +++ + +R+ + S + I +TYN H + G
Sbjct: 900 LQLNTAKNGVAD--VERLHKTINEKIRIINSSDDEEVKLSKIETILYTYNQKIKHDTTGQ 957
Query: 549 AP 550
P
Sbjct: 958 RP 959
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 150 bits (378), Expect = 1e-35
Identities = 165/698 (23%), Positives = 284/698 (40%), Gaps = 123/698 (17%)
Query: 2 LYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYR 61
L L K F ++V FLG+I+ I DP KV A+S+ SV E++ FLG+ YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369
Query: 62 RFIEGFSKLALPSTQLT-----------CKGKSFVWDAQCERSFNELKRRLTIAPVLILP 110
+FI+ ++K+A P T LT D +SFN+LK L + +L P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429
Query: 111 KPEEPFVVYCDASKLGLGGVLMQD----GKVVAYASRQLRVHEKNYPTHDLELAAVVFVL 166
+PF + DAS +G VL QD + +AY SR L E+NY T + E+ A+++ L
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSL 489
Query: 167 KIWRHYLYGSRFEVFRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*A 226
R YLYG+ +V++DH+ L + + N + +RW +++Y+ L Y PG +
Sbjct: 490 DNLRAYLYGAG----TIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKS 545
Query: 227 NVVADALSR---------------------------KTLHMSALMVKEFE---------L 250
NVVADALSR LH S+ ++ E L
Sbjct: 546 NVVADALSRIPPQLNQLSTDLDANPEDDMQSLATAHSALHDSSRLIPHVESPINVFKNQL 605
Query: 251 LEHFRDMSLVCELSFQSI--HLGMLKIDS--DFLNSIREAQKVDLKFVDLMTSGNDTEDS 306
+ +CE F HL LK S D NS++ + ++ +G
Sbjct: 606 IFDTTRSKYLCEHPFPGYTRHLIPLKDGSLADLTNSLQSCLR------PVIING------ 653
Query: 307 DFKVDDQGVLRFRGKVCIPD------------------NEELKKLILEESHKSRLSIHPG 348
K+ + + RF+ +C+ + EE+ ++I +E ++ H G
Sbjct: 654 -VKIPEAHLQRFQ-SICLANFLLYKIRITQRLVADVSGAEEICEIIEKEHRRA----HRG 707
Query: 349 ATKMYHDLKKLFWWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISM 408
T++ L + +++ + + +C C+ K E L P +P + + + +
Sbjct: 708 PTEIRLQLLEKYYFPRMSSTIRLQTSSCQCCKLYKYERHPNKPNLQPTPIPNYPCEILHI 767
Query: 409 DFVTSLPNTPRGHDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIV 468
D +D+ +K A + V L E + + + P +V
Sbjct: 768 DIFALEKR------LYLSCIDKFSKFAKLFHLQSKASV-HLRETLVEA-LHYFTAPKVLV 819
Query: 469 SDRDPRFTSRFWKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWD 528
SD + +L L + + +GQ ER + ++ R C+ ++ +
Sbjct: 820 SDNERGLLCPTVLNYLRSLDIDLYYAPTQKSEVNGQVERFHSTFLEIYR-CLKDELPTF- 877
Query: 529 SHLPLIEFT---YNNSYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEK 585
+ L+ YN S HS P + + R R D +T E
Sbjct: 878 KPVELVHIAVDRYNTSVHSVTNRKPADVFFDRSSRVNYQGL---------TDFRRQTLED 928
Query: 586 VRLIRE--RMKASQSRQKSYHDKRRKELEFQEGDHVFL 621
++ + E +++ + +R K+ R + + GD VF+
Sbjct: 929 IKGLIEYKQIRGNMARNKN----RDEPKSYGPGDEVFV 962
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 147 bits (370), Expect = 1e-34
Identities = 145/602 (24%), Positives = 258/602 (42%), Gaps = 77/602 (12%)
Query: 8 KCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIEGF 67
K F+ V +LG I+ DP KV A+ ++ V ++RSFLGLA YYR FI+ F
Sbjct: 375 KTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDF 434
Query: 68 SKLALPSTQLTCKGKSFVWDAQCERS----FNELKRR-------LTIAPVLILPKPE--E 114
+ +A P T + KG++ + FNE +R + + +IL P+ +
Sbjct: 435 AAIARPITDIL-KGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKK 493
Query: 115 PFVVYCDASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLY 174
PF + DAS G+G VL Q+G+ + SR L+ E+NY T++ EL A+V+ L +++LY
Sbjct: 494 PFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLY 553
Query: 175 GSRFEVFRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALS 234
GSR +F+DH+ L + + N + +RW + ++ + Y PG N VADALS
Sbjct: 554 GSR----EINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALS 609
Query: 235 RKTLHM--------SALMVKEFEL----------LEHFRDMSLVCELSF----------- 265
R+ L+ +A + E L L FR+ ++ F
Sbjct: 610 RQNLNALQNEPQSDAATIHSELSLTYTVETTDKPLNCFRNQIILEAARFPLKRNLVLFRS 669
Query: 266 QSIHLGMLKIDSDFLNSIREAQKVDLK---FVDLMTSGNDTEDSDFKVDDQGVLRFRGKV 322
+S HL S L +++E D+ DL T + D + V
Sbjct: 670 KSRHLISFTDKSWLLKTLKEVVNPDVVNAIHCDLPTLASFQHDLIAHFPATQFRHCKNVV 729
Query: 323 C-IPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVAQFVYACLICQK 381
I D E +++ E +++ H A + + + +++ + + V C +C +
Sbjct: 730 LDITDKNEQIEIVTAEHNRA----HRAAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQ 785
Query: 382 SKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDRLTKSAHFIP-- 439
+K + L +P + + + +D ++ +D+ +K A P
Sbjct: 786 AKYDRHPKKQELGETPIPSYTGEMVHIDIFST------DRKLFLTCIDKFSKYAIVQPVV 839
Query: 440 ----ININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSR-FWKRLQDALGSKLRLS 494
++I P+ Q+ ++ + ++ D +P F S L+++ G + +
Sbjct: 840 SRTIVDITAPLLQIINLFPNI--------KTVYCDNEPAFNSETVTSMLKNSFGIDIVNA 891
Query: 495 SAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPL-IEFTYNNSYHSSIGMAPFEA 553
H ++GQ ER +L ++ R L++ L L YN + HS P E
Sbjct: 892 PPLHSSSNGQVERFHSTLAEIARCLKLDKKTNDTVELILRATIEYNKTVHSVTRERPIEV 951
Query: 554 LY 555
++
Sbjct: 952 VH 953
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 130 bits (326), Expect = 1e-29
Identities = 83/235 (35%), Positives = 117/235 (49%), Gaps = 9/235 (3%)
Query: 8 KCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIEGF 67
KC F++ EV+FLGH I D K D + + R F+ YYRRFI+ F
Sbjct: 508 KCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNF 567
Query: 68 SKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLGL 127
+ + T+L K F W +C+++F LK +L +L P + F + DASK
Sbjct: 568 ADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQAC 627
Query: 128 GGVLMQDGK----VVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVFRF 183
G VL Q+ VAYASR E N T + ELAA+ + + +R Y+YG F
Sbjct: 628 GAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGK-----HF 682
Query: 184 EVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTL 238
V +DH+ L YLF + + R L++Y+F + Y G N VADALSR T+
Sbjct: 683 TVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRITI 737
Score = 106 bits (265), Expect = 2e-22
Identities = 85/331 (25%), Positives = 152/331 (45%), Gaps = 20/331 (6%)
Query: 326 DNEELKKLILEESHKSRLSI-HPGATKMYHDLKKLFWWSGLKRDVAQFVYACLICQKSKV 384
+NE+ K+ IL H + H G TK +K+ ++W + + + ++V C CQK+K
Sbjct: 888 NNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKT 947
Query: 385 -EHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDRLTKSAHFIPININ 443
+H K +T + PE +D + +D + LP + G++ ++ LTK IPI N
Sbjct: 948 TKHTKTPMTIT--ETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPI-AN 1004
Query: 444 YPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDALGSKLRLSSAYHPQTDG 503
+A+ S + +G + ++D + + L L K S+A+H QT G
Sbjct: 1005 KSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVG 1064
Query: 504 QSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRTPL 563
ER+ ++L + +R + WD L + +N + P+E ++GR P
Sbjct: 1065 VVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPK 1124
Query: 564 CW--FESGESVVLGPDLVHETTEKVRL----IRERMKASQSRQKSYHDKRRKELEFQEGD 617
+ S E + D E+ ++ + R+ ++A + + K +D + K++E + GD
Sbjct: 1125 HFNKLHSIEPIYNIDDYAKESKYRLEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGD 1184
Query: 618 HVFLRVTPLTGVGRALKSRKLTPKFIGPYQI 648
V LR VG KL K+ GPY+I
Sbjct: 1185 KVLLR----NEVG-----HKLDFKYTGPYKI 1206
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 99.0 bits (245), Expect = 4e-20
Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 25/297 (8%)
Query: 314 GVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVAQFV 373
G L +V +P + L+K++L++ H+ HPG +M + +W GL D+ V
Sbjct: 768 GCLLLDDRVIVP--KSLQKIVLKQLHEG----HPGIVQMKQKARSFVFWRGLDSDIENMV 821
Query: 374 YACLICQK-SKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDRLT 432
C CQ+ SK+ P L P VPE W I +DF L + VVVD T
Sbjct: 822 RHCNNCQENSKMPRVVP---LNPWPVPEAPWKRIHIDFAGPLNGC-----YLLVVVDAKT 873
Query: 433 KSAHFIPININYPVAQLAEI-YIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDALGSKL 491
K A + + ++ + I + + +HG P +I+SD + TS + ++ + G +
Sbjct: 874 KYAE---VKLTRSISAVTTIDLLEEIFSIHGYPETIISDNGTQLTSHLFAQMCQSHGIEH 930
Query: 492 RLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSI-GMAP 550
+ S+ Y+P+++G +ER + +L+ + + +G L +Y N+ HS++ G P
Sbjct: 931 KTSAVYYPRSNGAAERFVDTLKRGI-AKIKGEGSVNQQILNKFLISYRNTPHSALNGSTP 989
Query: 551 FEALYGRRCRTPLCWFESGESVVLGPDLV--HETTEKVRLIRE--RMKASQSRQKSY 603
E +GR+ RT + + V+ P L + + +R R KA Q QK Y
Sbjct: 990 AECHFGRKIRTTMSLLMPTDRVLKVPKLTQYQQNMKHHYELRNGARAKAFQVNQKVY 1046
>M860_ARATH (P92523) Hypothetical mitochondrial protein AtMg00860
(ORF158)
Length = 158
Score = 96.7 bits (239), Expect = 2e-19
Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 1 RLYAKLSKCEFWLSEVSFLGH--IIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAG 58
+ YA KC F ++++LGH II G ++ DP+K++A+ W K+ TE+R FLGL G
Sbjct: 15 QFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTG 74
Query: 59 YYRRFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFV 117
YYRRF++ + K+ P T+L K S W +F LK +T PVL LP + PFV
Sbjct: 75 YYRRFVKNYGKIVRPLTEL-LKKNSLKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV 132
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 91.3 bits (225), Expect = 7e-18
Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 9/248 (3%)
Query: 315 VLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVAQFVY 374
V R GK IP + ++IL+ + + H G + + +WW L++DV + +
Sbjct: 803 VTRPNGKRIIPPKSDRPQIILQAHNIA----HTGRDSTFLKVSSKYWWPNLRKDVVKVIR 858
Query: 375 ACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDRLTKS 434
C C + +L P + P +D +D++ LP + G+ + VVVD +T
Sbjct: 859 QCKQCLVTNAATLAAPPILRP-ERPVKPFDKFFIDYIGPLPPS-NGYLHVLVVVDSMTGF 916
Query: 435 AHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDALGSKLRLS 494
P A + + + + + VP I SD+ FTS + G +L S
Sbjct: 917 VWLYPTKAPSTSATVKALNMLTSI---AVPKVIHSDQGAAFTSATFADWAKNKGIQLEFS 973
Query: 495 SAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFEAL 554
+ YHPQ+ G+ ER ++ LL ++ + W LP+++ NNSY S P + L
Sbjct: 974 TPYHPQSSGKVERKNSDIKRLLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLL 1033
Query: 555 YGRRCRTP 562
+G TP
Sbjct: 1034 FGIDSNTP 1041
Score = 37.0 bits (84), Expect = 0.16
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 2/120 (1%)
Query: 6 LSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIE 65
L K E EV FLG I + + + + + +++S LGL + R FI
Sbjct: 360 LKKSEIAQHEVEFLGFNITKEGRGLTETFKQKLLNITPPRDLKQLQSILGLLNFARNFIP 419
Query: 66 GFSKLALPSTQL--TCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDAS 123
FS+L P + T GK W + + L A L PE ++ + S
Sbjct: 420 NFSELVKPLYNIIATANGKYITWTTDNSQQLQNIISMLNSAENLEERNPEVRLIMKVNTS 479
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 90.1 bits (222), Expect = 2e-17
Identities = 61/248 (24%), Positives = 112/248 (44%), Gaps = 9/248 (3%)
Query: 315 VLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVAQFVY 374
V R G IP + +K++L+ + + H G + L+WW +++DV + +
Sbjct: 593 VSRPEGVKIIPPQSDRQKIVLQAHNLA----HTGREATLLKIANLYWWPNMRKDVVKQLG 648
Query: 375 ACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDRLTKS 434
C C + ++ +L P D P+ +D +D++ LP + +G+ + VVVD +T
Sbjct: 649 RCQQCLITNASNKASGPILRP-DRPQKPFDKFFIDYIGPLPPS-QGYLYVLVVVDGMTGF 706
Query: 435 AHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDALGSKLRLS 494
P A + + + + + +P I SD+ FTS + G L S
Sbjct: 707 TWLYPTKAPSTSATVKSLNVLTSI---AIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFS 763
Query: 495 SAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFEAL 554
+ YHPQ+ + ER ++ LL ++ + W LP+++ NN+Y + P + L
Sbjct: 764 TPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLL 823
Query: 555 YGRRCRTP 562
+G TP
Sbjct: 824 FGIDSNTP 831
Score = 40.0 bits (92), Expect = 0.019
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 6 LSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIE 65
L K E V FLG I + + + K + +++S LGL + R FI
Sbjct: 149 LKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLLNITPPKDLKQLQSILGLLNFARNFIP 208
Query: 66 GFSKLALPSTQL--TCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDAS 123
F++L P L + KGK W + + N + L A L PE+ V+ + S
Sbjct: 209 NFAELVQPLYNLIASAKGKYIEWSEENTKQLNMVIEALNTASNLEERLPEQRLVIKVNTS 268
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 85.5 bits (210), Expect = 4e-16
Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 5/217 (2%)
Query: 346 HPGATKMYHDLKKLFWWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDS 405
H G + + +WW L++DV + + C C + + +L P+ P +D
Sbjct: 828 HTGRDATFLKVSSKYWWPNLRKDVVKSIRQCKQCLVTNATNLTSPPILRPVK-PLKPFDK 886
Query: 406 ISMDFVTSLPNTPRGHDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPA 465
+D++ LP + G+ + VVVD +T P A + + + + + +P
Sbjct: 887 FYIDYIGPLPPS-NGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNMLTSI---AIPK 942
Query: 466 SIVSDRDPRFTSRFWKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGG 525
+ SD+ FTS + G +L S+ YHPQ+ G+ ER ++ LL ++ +
Sbjct: 943 VLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLIGRPA 1002
Query: 526 AWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRTP 562
W LP+++ NNSY S P + L+G TP
Sbjct: 1003 KWYDLLPVVQLALNNSYSPSSKYTPHQLLFGVDSNTP 1039
Score = 33.5 bits (75), Expect = 1.8
Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 2/120 (1%)
Query: 6 LSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIE 65
L K E EV FLG I + + + K + +++S LGL + R FI
Sbjct: 358 LKKSEIAQREVEFLGFNITKEGRGLTDTFKQKLLNITPPKDLKQLQSILGLLNFARNFIP 417
Query: 66 GFSKLALP--STQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDAS 123
+S+L P + GK W + L A L PE ++ ++S
Sbjct: 418 NYSELVKPLYTIVANANGKFISWTEDNSNQLQHIISVLNQADNLEERNPETRLIIKVNSS 477
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 82.4 bits (202), Expect = 3e-15
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 8 KCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIEGF 67
K + EV++LG+++ + P++ V + + ++R FLG AG+ R +I GF
Sbjct: 375 KAQLCQREVTYLGYLLKEGKRWLTPARKATVMKIPVPTTPRQVREFLGTAGFCRLWIPGF 434
Query: 68 SKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLGL 127
+ LA P LT + F+W + +++F+ +K+ L AP L LP +PF +Y D
Sbjct: 435 ASLAAPLYPLTKESIPFIWTEEHQQAFDHIKKALLSAPALALPDLTKPFTLYIDERAGVA 494
Query: 128 GGVLMQD----GKVVAYASRQLRVHEKNYPTHDLELAAVVFVLK 167
GVL Q + VAY S++L +PT +AAV +LK
Sbjct: 495 RGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAVAAVALLLK 538
Score = 65.9 bits (159), Expect = 3e-10
Identities = 74/292 (25%), Positives = 121/292 (41%), Gaps = 38/292 (13%)
Query: 367 RDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWV 426
R+V AC + + V + G D P W+ +DF P G+ + V
Sbjct: 846 REVTSQCQACAMT--NAVTTYRETGKRQRGDRPGVYWE---VDFTEIKPGR-YGNKYLLV 899
Query: 427 VVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDA 486
+D + P + +I + ++ G+P + SD P F ++ + L
Sbjct: 900 FIDTFSGWVEAFPTKTETALIVCKKI-LEEILPRFGIPKVLGSDNGPAFVAQVSQGLATQ 958
Query: 487 LGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGA-WDSHLPLIEFTYNNSYHSS 545
LG +L AY PQ+ GQ ER +++++ L LE GG W + LPL N+
Sbjct: 959 LGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLALLRARNT-PGR 1017
Query: 546 IGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSRQKSYHD 605
G+ P+E LYG P ESGE+ LGPD + ++ +KA + + D
Sbjct: 1018 FGLTPYEILYG----GPPPILESGET--LGPD-----DRFLPVLFTHLKALEIVRTQIWD 1066
Query: 606 KRRKELE---------FQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQI 648
+ ++ + FQ GD V + R + L P++ GPY +
Sbjct: 1067 QIKEVYKPGTVTIPHPFQVGDQVLV---------RRHRPSSLEPRWKGPYLV 1109
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 82.4 bits (202), Expect = 3e-15
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 4 AKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRF 63
A K + ++V++LG+I+ + P +++ V++ ++ E+R FLG AG+ R +
Sbjct: 372 ASAKKAQICQTKVTYLGYILSEGKRWLTPGRIETVARIPPPRNPREVREFLGTAGFCRLW 431
Query: 64 IEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDAS 123
I GF++LA P LT + F W + + +F LK+ L AP L LP +PF ++ D
Sbjct: 432 IPGFAELAAPLYALTKESTPFTWQTEHQLAFEALKKALLSAPALGLPDTSKPFTLFLDER 491
Query: 124 KLGLGGVLMQD----GKVVAYASRQLRVHEKNYPTHDLELAAVVFVLK 167
+ GVL Q + VAY S++L +P +AA ++K
Sbjct: 492 QGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVK 539
Score = 63.2 bits (152), Expect = 2e-09
Identities = 65/240 (27%), Positives = 103/240 (42%), Gaps = 14/240 (5%)
Query: 320 GKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKL-FWWSGLKRDVAQFVYACLI 378
GK+ +P E L ++++ H H G K+ ++K F + Q AC +
Sbjct: 828 GKIVLPQKEALA--MIQQMHAWT---HLGNRKLKLLIEKTDFLIPRASTLIEQVTSACKV 882
Query: 379 CQKSKVEHQK-PAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDRLTKSAHF 437
CQ+ + PAG T + P W+ +DF P+ G+ + V VD +
Sbjct: 883 CQQVNAGATRVPAGKRTRGNRPGVYWE---IDFTEVKPHYA-GYKYLLVFVDTFSGWVEA 938
Query: 438 IPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDALGSKLRLSSAY 497
P +A+ + + G+P I SD P F S+ + L LG +L AY
Sbjct: 939 FPTR-QETAHIVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQGLARILGINWKLHCAY 997
Query: 498 HPQTDGQSERTIQSLEDLLRVCVLEQG-GAWDSHLPLIEFTYNNSYHSSIGMAPFEALYG 556
PQ+ GQ ER +++++ L LE G W L L N+ + G+ P+E LYG
Sbjct: 998 RPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARNT-PNRFGLTPYEILYG 1056
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 80.9 bits (198), Expect = 1e-14
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 4/168 (2%)
Query: 4 AKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRF 63
A K + ++V++LG+I+ + P +++ V+ ++ E+R FLG AG+ R +
Sbjct: 229 ASAKKAQICQTKVTYLGYILSEGKRWLTPGRIETVAHIPPPQNPREVREFLGTAGFCRLW 288
Query: 64 IEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDAS 123
I GF++LA P LT + F W + + +F LK L AP L LP +PF ++ D
Sbjct: 289 IPGFAELAAPLYALTKESAPFTWQEKHQSAFEALKEALLSAPALGLPDTSKPFTLFIDEK 348
Query: 124 KLGLGGVLMQD----GKVVAYASRQLRVHEKNYPTHDLELAAVVFVLK 167
+ GVL Q + VAY S++L +P +AA ++K
Sbjct: 349 QGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVK 396
Score = 60.8 bits (146), Expect = 1e-08
Identities = 53/190 (27%), Positives = 82/190 (42%), Gaps = 8/190 (4%)
Query: 369 VAQFVYACLICQKSKVEHQK-PAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVV 427
+ Q AC +CQ+ + P G T + P W+ +DF P+ G+ + V
Sbjct: 730 IEQVTSACKVCQQVNAGATRVPEGKRTRGNRPGVYWE---IDFTEVKPHYA-GYKYLLVF 785
Query: 428 VDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDAL 487
VD + P +A+ + + G+P I SD P F S+ + L L
Sbjct: 786 VDTFSGWVEAYPTR-QETAHMVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQGLARTL 844
Query: 488 GSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQG-GAWDSHLPLIEFTYNNSYHSSI 546
G +L AY PQ+ GQ ER +++++ L LE G W L L N+ +
Sbjct: 845 GINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARNT-PNRF 903
Query: 547 GMAPFEALYG 556
G+ P+E LYG
Sbjct: 904 GLTPYEILYG 913
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 75.9 bits (185), Expect = 3e-13
Identities = 49/168 (29%), Positives = 84/168 (49%), Gaps = 4/168 (2%)
Query: 4 AKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRF 63
A K + +V +LG+++ + ++ + V T K+ ++R FLG AG+ R +
Sbjct: 379 ASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLW 438
Query: 64 IEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDAS 123
I GF+++A P LT G F W ++++ E+K+ L AP L LP +PF ++ D
Sbjct: 439 IPGFAEMAAPLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEK 498
Query: 124 KLGLGGVLMQD----GKVVAYASRQLRVHEKNYPTHDLELAAVVFVLK 167
+ GVL Q + VAY S++L +P +AA+ + K
Sbjct: 499 QGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTK 546
Score = 56.6 bits (135), Expect = 2e-07
Identities = 50/190 (26%), Positives = 82/190 (42%), Gaps = 15/190 (7%)
Query: 462 GVPASIVSDRDPRFTSRFWKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVL 521
G+P + +D P F S+ + + D LG +L AY PQ+ GQ ER +++++ L L
Sbjct: 972 GMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTL 1031
Query: 522 EQGGA-WDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRTPLCWFESGE--SVVLGPDL 578
G W LPL + N+ G+ P+E LYG PL F + V P L
Sbjct: 1032 ATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMAKVTHNPSL 1088
Query: 579 VHETTEKVRLIRERMKASQSRQKSYHDKRRKELEFQEGDHVFLRVTPLTGVGRALKSRKL 638
+ E + + + D+ F+ GD V++ R +++ L
Sbjct: 1089 QAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWV---------RRHQTKNL 1139
Query: 639 TPKFIGPYQI 648
P++ GPY +
Sbjct: 1140 EPRWKGPYTV 1149
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 75.9 bits (185), Expect = 3e-13
Identities = 49/168 (29%), Positives = 84/168 (49%), Gaps = 4/168 (2%)
Query: 4 AKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRF 63
A K + +V +LG+++ + ++ + V T K+ ++R FLG AG+ R +
Sbjct: 379 ASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLW 438
Query: 64 IEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDAS 123
I GF+++A P LT G F W ++++ E+K+ L AP L LP +PF ++ D
Sbjct: 439 IPGFAEMAAPLYPLTKTGTLFEWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEK 498
Query: 124 KLGLGGVLMQD----GKVVAYASRQLRVHEKNYPTHDLELAAVVFVLK 167
+ GVL Q + VAY S++L +P +AA+ + K
Sbjct: 499 QGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTK 546
Score = 56.6 bits (135), Expect = 2e-07
Identities = 50/190 (26%), Positives = 82/190 (42%), Gaps = 15/190 (7%)
Query: 462 GVPASIVSDRDPRFTSRFWKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVL 521
G+P + +D P F S+ + + D LG +L AY PQ+ GQ ER +++++ L L
Sbjct: 972 GMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTL 1031
Query: 522 EQGGA-WDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRTPLCWFESGE--SVVLGPDL 578
G W LPL + N+ G+ P+E LYG PL F + V P L
Sbjct: 1032 ATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMAKVTHNPSL 1088
Query: 579 VHETTEKVRLIRERMKASQSRQKSYHDKRRKELEFQEGDHVFLRVTPLTGVGRALKSRKL 638
+ E + + + D+ F+ GD V++ R +++ L
Sbjct: 1089 QAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWV---------RRHQTKNL 1139
Query: 639 TPKFIGPYQI 648
P++ GPY +
Sbjct: 1140 EPRWKGPYTV 1149
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 75.9 bits (185), Expect = 3e-13
Identities = 50/168 (29%), Positives = 85/168 (49%), Gaps = 5/168 (2%)
Query: 4 AKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRF 63
A K + +V +LG+++ + ++ + V T K+ ++R FLG AG+ R +
Sbjct: 374 ASAKKAQLCQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLW 433
Query: 64 IEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDAS 123
I GF+++A P LT G F W ++++ E+K+ L AP L LP +PF ++ D
Sbjct: 434 IPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEK 493
Query: 124 KLGLGGVLMQD----GKVVAYASRQLRVHEKNYPTHDLELAAVVFVLK 167
+ GVL Q + VAY S++L +P L + A + VL+
Sbjct: 494 QGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPP-CLRMVAAIAVLR 540
Score = 64.3 bits (155), Expect = 1e-09
Identities = 82/343 (23%), Positives = 137/343 (39%), Gaps = 29/343 (8%)
Query: 313 QGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKK---LFWWSGLKRDV 369
+G F+GK +PD + +L+ H+ H G KM L + ++ + +
Sbjct: 824 KGYWVFQGKPVMPDQFVFE--LLDSLHRLT---HLGYQKMKALLDRGESPYYMLNRDKTL 878
Query: 370 AQFVYACLICQKSKVEHQK-PAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVV 428
+C +C + K AG+ P W+ +DF P G+ + V V
Sbjct: 879 QYVADSCTVCAQVNASKAKIGAGVRVRGHRPGSHWE---IDFTEVKPGL-YGYKYLLVFV 934
Query: 429 DRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDALG 488
D + P +++ + + G+P + SD P FTS+ + + D LG
Sbjct: 935 DTFSGWVEAFPTK-RETARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADLLG 993
Query: 489 SKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGA-WDSHLPLIEFTYNNSYHSSIG 547
+L AY PQ+ GQ ER +++++ L L G W LPL + N+ G
Sbjct: 994 IDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYRARNT-PGPHG 1052
Query: 548 MAPFEALYGRRCRTPLCWFESGESVVL--GPDLVHETTEKVRLIRERMKASQSRQKSYHD 605
+ P+E LYG PL F + L P L + RE K + D
Sbjct: 1053 LTPYEILYG--APPPLVNFHDPDMSELTNSPSLQAHLQALQTVQREIWKPLAEAYRDQLD 1110
Query: 606 KRRKELEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQI 648
+ F+ GD V++ R +++ L P++ GPY +
Sbjct: 1111 QPVIPHPFRIGDSVWV---------RRHQTKNLEPRWKGPYTV 1144
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,439,457
Number of Sequences: 164201
Number of extensions: 3342233
Number of successful extensions: 7319
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 7193
Number of HSP's gapped (non-prelim): 86
length of query: 659
length of database: 59,974,054
effective HSP length: 117
effective length of query: 542
effective length of database: 40,762,537
effective search space: 22093295054
effective search space used: 22093295054
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 69 (31.2 bits)
Medicago: description of AC148291.4