BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148289.9 - phase: 0
(52 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U2R1_MOUSE (Q64707) U2 small nuclear ribonucleoprotein auxiliary... 32 0.42
TTP_RAT (P47973) Tristetraproline (TTP) (Zinc finger protein 36)... 31 0.54
KI47_MOUSE (Q8VDM1) Protein KIAA1847 homolog 31 0.54
KI47_HUMAN (Q8N5A5) Protein KIAA1847 31 0.54
U2R2_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliary... 30 1.6
U2R2_HUMAN (Q15696) U2 small nuclear ribonucleoprotein auxiliary... 30 1.6
U2R1_HUMAN (Q15695) U2 small nuclear ribonucleoprotein auxiliary... 30 1.6
ZCC6_MOUSE (Q8BYK8) Zinc finger CCCH type domain containing prot... 29 2.1
Z18L_HUMAN (Q8IZP6) Zinc finger protein 183-like 1 29 2.1
Z183_HUMAN (O15541) Zinc finger protein 183 29 2.1
TTP_MOUSE (P22893) Tristetraproline (TTP) (Zinc finger protein 3... 29 2.1
MKR2_BRARE (Q9DFG8) Makorin 2 29 2.1
Z183_CAEEL (O17917) Putative zinc finger protein 183 homolog 29 2.7
TTP_HUMAN (P26651) Tristetraproline (TTP) (Zinc finger protein 3... 29 2.7
MKR2_MOUSE (Q9ERV1) Makorin 2 29 2.7
TTP_SHEEP (Q6S9E0) Tristetraproline (TTP) (Zinc finger protein 3... 28 3.5
CWFO_SCHPO (Q9P6R8) Cell cycle control protein cwf24 28 3.5
YL23_YEAST (P53769) Hypothetical 29.7 kDa protein in REC102-SFH1... 28 4.6
ZCC3_MOUSE (Q8CHP0) Zinc finger CCCH type domain containing prot... 28 6.0
ZCC3_HUMAN (Q8IXZ2) Zinc finger CCCH type domain containing prot... 28 6.0
>U2R1_MOUSE (Q64707) U2 small nuclear ribonucleoprotein auxiliary
factor 35 kDa subunit related-protein 1 (U2(RNU2) small
nuclear RNA auxillary factor 1-like 1) (SP2)
Length = 428
Score = 31.6 bits (70), Expect = 0.42
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 24 PDCSYYIRTGLCRFGATCRFNH 45
P C +Y +TG CRFG C H
Sbjct: 161 PSCPFYNKTGACRFGNRCSRKH 182
>TTP_RAT (P47973) Tristetraproline (TTP) (Zinc finger protein 36)
(Zfp-36) (TIS11A protein) (TIS11)
Length = 320
Score = 31.2 bits (69), Expect = 0.54
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 26 CSYYIRTGLCRFGATCRFNHPP 47
C Y +G CR+GA C+F H P
Sbjct: 102 CRTYSESGRCRYGAKCQFAHGP 123
Score = 30.0 bits (66), Expect = 1.2
Identities = 14/49 (28%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Query: 3 QMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL 51
Q + P E ++ +P++ E +Y++ G C +G+ C F H P L
Sbjct: 118 QFAHGPGELRQANRHPKYKTELCHKFYLQ-GRCPYGSRCHFIHNPTEDL 165
>KI47_MOUSE (Q8VDM1) Protein KIAA1847 homolog
Length = 511
Score = 31.2 bits (69), Expect = 0.54
Identities = 12/29 (41%), Positives = 16/29 (54%), Gaps = 1/29 (3%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNH 45
YP H C +++ G CRF CRF+H
Sbjct: 170 YPTHKSLKPCPFFLE-GKCRFKENCRFSH 197
>KI47_HUMAN (Q8N5A5) Protein KIAA1847
Length = 531
Score = 31.2 bits (69), Expect = 0.54
Identities = 12/29 (41%), Positives = 16/29 (54%), Gaps = 1/29 (3%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNH 45
YP H C +++ G CRF CRF+H
Sbjct: 171 YPTHKSLKPCPFFLE-GKCRFKENCRFSH 198
>U2R2_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliary
factor 35 kDa subunit related-protein 2 (U2(RNU2) small
nuclear RNA auxillary factor 1-like 2)
Length = 462
Score = 29.6 bits (65), Expect = 1.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 25 DCSYYIRTGLCRFGATCRFNH 45
+C +Y +TG CRFG C H
Sbjct: 175 NCPFYSKTGACRFGDRCSRKH 195
>U2R2_HUMAN (Q15696) U2 small nuclear ribonucleoprotein auxiliary
factor 35 kDa subunit related-protein 2 (U2(RNU2) small
nuclear RNA auxillary factor 1-like 2)
Length = 482
Score = 29.6 bits (65), Expect = 1.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 25 DCSYYIRTGLCRFGATCRFNH 45
+C +Y +TG CRFG C H
Sbjct: 171 NCPFYSKTGACRFGDRCSRKH 191
>U2R1_HUMAN (Q15695) U2 small nuclear ribonucleoprotein auxiliary
factor 35 kDa subunit related-protein 1 (U2(RNU2) small
nuclear RNA auxillary factor 1-like 1)
Length = 479
Score = 29.6 bits (65), Expect = 1.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 25 DCSYYIRTGLCRFGATCRFNH 45
+C +Y +TG CRFG C H
Sbjct: 176 NCPFYSKTGACRFGDRCSRKH 196
>ZCC6_MOUSE (Q8BYK8) Zinc finger CCCH type domain containing protein
6
Length = 1177
Score = 29.3 bits (64), Expect = 2.1
Identities = 12/27 (44%), Positives = 16/27 (58%), Gaps = 1/27 (3%)
Query: 19 EHPGEPDCSYYIRTGLCRFGATCRFNH 45
EH G+ C Y++ G C G C+FNH
Sbjct: 269 EHKGKQICKYFLE-GRCIKGDHCKFNH 294
>Z18L_HUMAN (Q8IZP6) Zinc finger protein 183-like 1
Length = 322
Score = 29.3 bits (64), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 EPD-CSYYIRTGLCRFGATCRFNH 45
+PD C Y TG C FG +C+F H
Sbjct: 192 QPDICKDYKETGFCGFGDSCKFLH 215
>Z183_HUMAN (O15541) Zinc finger protein 183
Length = 343
Score = 29.3 bits (64), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 EPD-CSYYIRTGLCRFGATCRFNH 45
+PD C Y TG C FG +C+F H
Sbjct: 198 QPDICKDYKETGFCGFGDSCKFLH 221
>TTP_MOUSE (P22893) Tristetraproline (TTP) (Zinc finger protein 36)
(Zfp-36) (TIS11A protein) (TIS11) (Growth
factor-inducible nuclear protein NUP475) (TPA induced
sequence 11)
Length = 319
Score = 29.3 bits (64), Expect = 2.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 26 CSYYIRTGLCRFGATCRFNH 45
C Y +G CR+GA C+F H
Sbjct: 101 CRTYSESGRCRYGAKCQFAH 120
>MKR2_BRARE (Q9DFG8) Makorin 2
Length = 414
Score = 29.3 bits (64), Expect = 2.1
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 26 CSYYIRTGLCRFGATCRFNH--PPNR 49
C YY R G C +G CR++H PP R
Sbjct: 37 CKYYQR-GACAYGDRCRYDHIKPPGR 61
>Z183_CAEEL (O17917) Putative zinc finger protein 183 homolog
Length = 384
Score = 28.9 bits (63), Expect = 2.7
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 24 PD-CSYYIRTGLCRFGATCRFNH 45
PD C Y TG C FG +C+F H
Sbjct: 178 PDICKDYKETGFCTFGDSCKFVH 200
>TTP_HUMAN (P26651) Tristetraproline (TTP) (Zinc finger protein 36
homolog) (Zfp-36) (TIS11A protein) (TIS11) (Growth
factor-inducible nuclear protein NUP475) (G0/G1 switch
regulatory protein 24)
Length = 326
Score = 28.9 bits (63), Expect = 2.7
Identities = 12/43 (27%), Positives = 20/43 (45%)
Query: 3 QMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNH 45
++S P+ + P C + +G CR+GA C+F H
Sbjct: 86 ELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAH 128
Score = 27.3 bits (59), Expect = 7.9
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 10 ETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL 51
E ++ +P++ E +Y++ G C +G+ C F H P+ L
Sbjct: 132 ELRQANRHPKYKTELCHKFYLQ-GRCPYGSRCHFIHNPSEDL 172
>MKR2_MOUSE (Q9ERV1) Makorin 2
Length = 416
Score = 28.9 bits (63), Expect = 2.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 26 CSYYIRTGLCRFGATCRFNH--PP 47
C YY + G C +GA CR++H PP
Sbjct: 37 CKYY-QKGYCAYGARCRYDHTKPP 59
>TTP_SHEEP (Q6S9E0) Tristetraproline (TTP) (Zinc finger protein 36
homolog) (Zfp-36)
Length = 325
Score = 28.5 bits (62), Expect = 3.5
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 6 LRPSETMESGPYPEHPGEPD----------CSYYIRTGLCRFGATCRFNH 45
L P + E P P P C + +G CR+GA C+F H
Sbjct: 77 LAPRPSSELSPSPTSPTATPTTSSRYKTELCRTFSESGRCRYGAKCQFAH 126
>CWFO_SCHPO (Q9P6R8) Cell cycle control protein cwf24
Length = 533
Score = 28.5 bits (62), Expect = 3.5
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 EPD-CSYYIRTGLCRFGATCRFNH 45
+PD C Y TG C +G TC+F H
Sbjct: 186 QPDVCKDYKLTGYCGYGDTCKFLH 209
>YL23_YEAST (P53769) Hypothetical 29.7 kDa protein in REC102-SFH1
intergenic region
Length = 259
Score = 28.1 bits (61), Expect = 4.6
Identities = 11/24 (45%), Positives = 16/24 (65%), Gaps = 1/24 (4%)
Query: 23 EPD-CSYYIRTGLCRFGATCRFNH 45
+PD C Y +TG C +G +C+F H
Sbjct: 140 QPDVCKDYKQTGYCGYGDSCKFLH 163
>ZCC3_MOUSE (Q8CHP0) Zinc finger CCCH type domain containing protein
3
Length = 950
Score = 27.7 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 13/27 (47%)
Query: 26 CSYYIRTGLCRFGATCRFNHPPNRKLV 52
C YY R G C G C + H P + V
Sbjct: 668 CMYYNRFGRCNRGECCPYIHDPEKVAV 694
>ZCC3_HUMAN (Q8IXZ2) Zinc finger CCCH type domain containing protein
3
Length = 948
Score = 27.7 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 13/27 (47%)
Query: 26 CSYYIRTGLCRFGATCRFNHPPNRKLV 52
C YY R G C G C + H P + V
Sbjct: 673 CMYYNRFGRCNRGERCPYIHDPEKVAV 699
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.140 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,854,842
Number of Sequences: 164201
Number of extensions: 242494
Number of successful extensions: 497
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 33
length of query: 52
length of database: 59,974,054
effective HSP length: 28
effective length of query: 24
effective length of database: 55,376,426
effective search space: 1329034224
effective search space used: 1329034224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC148289.9