BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148240.10 - phase: 0 /pseudo
         (1012 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MDM1_YEAST (Q01846) Structural protein MDM1                            34  1.7
RMAR_CANGA (P21358) Mitochondrial ribosomal protein VAR1               32  6.6
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820...    32  6.6

>MDM1_YEAST (Q01846) Structural protein MDM1
          Length = 1127

 Score = 34.3 bits (77), Expect = 1.7
 Identities = 32/92 (34%), Positives = 47/92 (50%), Gaps = 9/92 (9%)

Query: 421 IESLEIKLQSKVKVMQV--QLILK--MHQNLINLLILKSIQKLNLVQKLKSLQKLSLIQK 476
           I SL I +    K +++   LILK  +  N + L ILK  Q+      LK L+   L+++
Sbjct: 712 IASLTISIDQIEKELELLRHLILKADLTNNQMQLKILKKSQRT----LLKELEMKELLKQ 767

Query: 477 QKLVQ*NRMKMLLRMFKITLSRLFSQNSNTNL 508
           Q +VQ N    L R  KI +   FS+NS+  L
Sbjct: 768 QYMVQENG-NSLFRKTKIYIRSYFSENSSNGL 798


>RMAR_CANGA (P21358) Mitochondrial ribosomal protein VAR1
          Length = 339

 Score = 32.3 bits (72), Expect = 6.6
 Identities = 31/111 (27%), Positives = 57/111 (50%), Gaps = 13/111 (11%)

Query: 605 KPDLLLKVTVNKKALI-------TLKHLLQLQDWKQSGYFYPMQLTMA*YC-IKWMSKVL 656
           K  L+ K++ N K L        +L+HL  + +WK   Y Y    T+  Y   K ++K+L
Sbjct: 30  KNRLMNKLSNNNKYLSELNNKGNSLQHLNNMNNWKLQNYNYNKNNTINNYINSKLINKLL 89

Query: 657 FLMVSLK--KKYMSNNL--LGLRILSILTMFINLRNHYMA*NKLPELGMID 703
           + ++SLK  K  +S  L  + + +++I   + N+ N+Y   N +  + MI+
Sbjct: 90  YKLMSLKNNKIIISKPLYKINMNVINIRFYYYNM-NNYNYNNNIYYINMIN 139


>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
           (ORF170)
          Length = 170

 Score = 32.3 bits (72), Expect = 6.6
 Identities = 18/36 (50%), Positives = 22/36 (61%)

Query: 649 IKWMSKVLFLMVSLKKKYMSNNLLGLRILSILTMFI 684
           I WM K+ F M   KKK++  NLL LRIL I  M +
Sbjct: 134 INWMFKMHFSMGIFKKKFICINLLVLRILFIHPMCV 169


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.359    0.160    0.523 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,891,376
Number of Sequences: 164201
Number of extensions: 2836281
Number of successful extensions: 10229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10227
Number of HSP's gapped (non-prelim): 3
length of query: 1012
length of database: 59,974,054
effective HSP length: 120
effective length of query: 892
effective length of database: 40,269,934
effective search space: 35920781128
effective search space used: 35920781128
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 71 (32.0 bits)