BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148236.4 - phase: 0
(279 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YKM8_YEAST (P36069) Hypothetical 33.8 kDa protein in MYO3-PGM1 i... 54 3e-07
YA03_SCHPO (Q09676) Hypothetical protein C5H10.03 in chromosome I 49 2e-05
SYA_PORGI (Q7MV54) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 33 1.0
POLG_TVMV (P09814) Genome polyprotein [Contains: P1 proteinase (... 31 3.8
Y400_SYNY3 (Q55129) Hypothetical protein sll0400 30 8.5
MNT2_YEAST (P53059) Alpha-1,3-mannosyltransferase MNT2 (EC 2.4.1.-) 30 8.5
GYRA_STRR6 (Q8DPM2) DNA gyrase subunit A (EC 5.99.1.3) 30 8.5
GYRA_STRPN (P72524) DNA gyrase subunit A (EC 5.99.1.3) 30 8.5
C4A1_DROME (Q9VMS9) Probable cytochrome P450 4ac1 (EC 1.14.-.-) ... 30 8.5
>YKM8_YEAST (P36069) Hypothetical 33.8 kDa protein in MYO3-PGM1
intergenic region
Length = 295
Score = 54.3 bits (129), Expect = 3e-07
Identities = 63/216 (29%), Positives = 93/216 (42%), Gaps = 44/216 (20%)
Query: 17 RHAQGFHNVE----GDKNPDAYLSY-------DLFDASLTPLGWKQVDNLRQHV---KAS 62
RH QG+HN G + DAY S + D+ LTPLG QV +V A
Sbjct: 60 RHGQGYHNAAILRYGMEKWDAYWSLLSGDEHGEWLDSKLTPLGKDQVRRTGSNVLLPMAK 119
Query: 63 GLSKRIELVIVSPLLRTMQTAVGVFGGEAHTDGVDAPPLMNENVVNSSRHAISSLNSPPF 122
L + SP+ R ++T + E+ T P++ E + IS+
Sbjct: 120 QLGMLPHVFFSSPMRRCLETFI-----ESWT------PVLAETQELPAGTKISTR----- 163
Query: 123 VAVELCREHLGVHPCDKR----RGISEYQNMFPAIDFSLIER------DEDILWKPDIRE 172
+E RE LG H CDKR + EYQ+ ++ + ++D LW PD RE
Sbjct: 164 -IIEGLRETLGSHTCDKRVAHSMAVDEYQDFSTESGHTVHWQYVPDYPEDDELWLPDHRE 222
Query: 173 KNEEVAARGLKFLEWLWTR---KEKEIAVVSHSGFL 205
E+ R L L L+ + +EK I++ HSG +
Sbjct: 223 TCAEMDKRTLNGLFELFNQLSSEEKFISLTCHSGVI 258
>YA03_SCHPO (Q09676) Hypothetical protein C5H10.03 in chromosome I
Length = 219
Score = 48.5 bits (114), Expect = 2e-05
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 33/236 (13%)
Query: 9 LIQTCMQVRHAQGFHNVEGDKNPDAYLSYDLFDASLTPLGWKQVDNLRQHVKASGLSKRI 68
L +T +RH Q HNV D++ +++ D LT G +Q + L + +++ + I
Sbjct: 5 LKKTVYLIRHGQAQHNVGPDED------HNIRDPVLTSEGIEQCEALAKELESKQIP--I 56
Query: 69 ELVIVSPLLRTMQTAVGVFGGEAHTDGVDAPPLMNENVVNSSRHAISSLNSPPFVAVELC 128
+ ++ SP+ RT+QT G D P+ SP F
Sbjct: 57 DGIVCSPMRRTLQTMEIALKKYLAEGGPDKVPVYI---------------SPFF------ 95
Query: 129 REHLGVHPCDKRRGISEYQNMFPAIDFSLIERDEDILWKPDIREKNEEVAA-RGLKFLEW 187
+ +G PCD + + ++P +F + D K DI + ++A R + LE+
Sbjct: 96 -QEVGHLPCDIGLELDKLNKLYPKYNFQSCQ-DGIYPEKRDIYASDVTISAIRSKEALEY 153
Query: 188 LWTRKEKEIAVVSHSGFLFHTLSAFGNDCHANVKSEICTHFANCELRSVVIIDRGT 243
L +++IAV++HS F+ L + + F NCE R ++ T
Sbjct: 154 LAALPQQQIAVITHSAFIRFLLKKMVKAADIDFLPPQLS-FKNCEFRIYDLVQTTT 208
>SYA_PORGI (Q7MV54) Alanyl-tRNA synthetase (EC 6.1.1.7)
(Alanine--tRNA ligase) (AlaRS)
Length = 876
Score = 32.7 bits (73), Expect = 1.0
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 41 DASLTPLGWKQVDN----LRQHVKASGLSKRIELVIVSPLLRTMQTAVGVFGGEAHTDGV 96
DASLTPL K +D R + G + + + PL+RT+ T G+ GE T +
Sbjct: 223 DASLTPLPHKVIDTGMGFERLCMALQGKTSNYDTDVFQPLIRTLATMTGIGYGEDSTSDI 282
>POLG_TVMV (P09814) Genome polyprotein [Contains: P1 proteinase
(N-terminal protein); Helper component proteinase (EC
3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1);
Cytoplasmic inclusion protein (CI); 6 kDa protein 2
(6K2); Viral genome-linked pr
Length = 3023
Score = 30.8 bits (68), Expect = 3.8
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 145 EYQNMFPAIDFSLIERDEDILWKPDIREKNEEVAARGLKFL-EWLWTRKEKEIAVVSHSG 203
E+ N+ AID S E D + +R ++E ARGLK W W+ +++ VVS G
Sbjct: 1739 EFSNL--AIDPSTTEALRDFGYLEAVRFQSESEMARGLKLSGHWKWSLISRDLIVVSGVG 1796
>Y400_SYNY3 (Q55129) Hypothetical protein sll0400
Length = 164
Score = 29.6 bits (65), Expect = 8.5
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 23 HNVEGDKNPDAYLSYDLFDASLTPLGWKQVDNLRQHVKASGLSKRIELVIVSPLLRTMQT 82
H + +++PD D LT G + + Q ++A G+ +L++ SPL+R QT
Sbjct: 8 HGIAQEQSPDIPDG----DRQLTKKGKDKTQRVAQRLQAIGVE--FDLILTSPLVRAQQT 61
Query: 83 A 83
A
Sbjct: 62 A 62
>MNT2_YEAST (P53059) Alpha-1,3-mannosyltransferase MNT2 (EC 2.4.1.-)
Length = 558
Score = 29.6 bits (65), Expect = 8.5
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 128 CREHLGVHPCDKRRGISEYQNMFPAIDFSLIERDEDILWKPDIREKNEEVAARGLKF 184
C + + H + R I + +FP I+F +E DE W R E A L+F
Sbjct: 86 CLQQVDGHNIQRLRDIEK--KLFPYINFEKLETDESAFWHTTTRWNGEVYHASMLEF 140
>GYRA_STRR6 (Q8DPM2) DNA gyrase subunit A (EC 5.99.1.3)
Length = 822
Score = 29.6 bits (65), Expect = 8.5
Identities = 22/69 (31%), Positives = 32/69 (45%), Gaps = 1/69 (1%)
Query: 24 NVEGDKNPDAYLSYDLFDASLTPLGWKQVDNLRQH-VKASGLSKRIELVIVSPLLRTMQT 82
NVE D++ DAYL + + K+ N+RQ+ +KA L EL+ V M
Sbjct: 600 NVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDI 659
Query: 83 AVGVFGGEA 91
+G G A
Sbjct: 660 IIGTKFGYA 668
>GYRA_STRPN (P72524) DNA gyrase subunit A (EC 5.99.1.3)
Length = 822
Score = 29.6 bits (65), Expect = 8.5
Identities = 22/69 (31%), Positives = 32/69 (45%), Gaps = 1/69 (1%)
Query: 24 NVEGDKNPDAYLSYDLFDASLTPLGWKQVDNLRQH-VKASGLSKRIELVIVSPLLRTMQT 82
NVE D++ DAYL + + K+ N+RQ+ +KA L EL+ V M
Sbjct: 600 NVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDI 659
Query: 83 AVGVFGGEA 91
+G G A
Sbjct: 660 IIGTKFGYA 668
>C4A1_DROME (Q9VMS9) Probable cytochrome P450 4ac1 (EC 1.14.-.-)
(CYPIVAC1)
Length = 509
Score = 29.6 bits (65), Expect = 8.5
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 105 NVVNSSRHAISSLNS--PPFVAVELCREHLGVHPCDKRRGISEYQNMFPAIDFSLIER 160
NV+ + A LN PPF +C LGV D G +EY+ AI+ LI+R
Sbjct: 171 NVLEKNLDAELELNQVIPPFTLNNICETALGVKLDDMSEG-NEYRKAIHAIEEVLIQR 227
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,309,725
Number of Sequences: 164201
Number of extensions: 1409285
Number of successful extensions: 2851
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2847
Number of HSP's gapped (non-prelim): 9
length of query: 279
length of database: 59,974,054
effective HSP length: 109
effective length of query: 170
effective length of database: 42,076,145
effective search space: 7152944650
effective search space used: 7152944650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC148236.4