Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147963.2 - phase: 0 
         (129 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MPR_BACSU (P39790) Extracellular metalloprotease precursor (EC 3...    30  1.2
METK_METKA (Q8TV85) S-adenosylmethionine synthetase (EC 2.5.1.6)...    29  1.6
YA95_PORGI (Q7MVG9) Hypothetical RNA methyltransferase PG1095 (E...    29  2.1
Y188_CLOPE (P26832) Hypothetical protein CPE0188                       28  2.7
Y123_TREPA (O83160) Hypothetical protein TP0123                        28  2.7
N192_YEAST (P47054) Nucleoporin NUP192 (Nuclear pore protein NUP...    28  2.7
TOM1_YEAST (Q03280) E3 ubiquitin protein ligase TOM1 (EC 6.3.2.-...    28  3.6
SSRP_AQUAE (O66640) SsrA-binding protein                               28  3.6
PLEC_CAUCR (P37894) Non-motile and phage-resistance protein (EC ...    28  3.6
MTA3_MOUSE (Q924K8) Metastasis associated protein MTA3                 28  3.6
CHLN_ANTFO (Q85A72) Light-independent protochlorophyllide reduct...    28  3.6
APCE_SYNY4 (Q02907) Phycobilisome 100.5 kDa core-membrane linker...    28  3.6
TFB1_SULSO (P58111) Transcription initiation factor IIB 1 (TFIIB 1)    28  4.6
TF2B_SULSH (P50387) Transcription initiation factor IIB (TFIIB)        28  4.6
SMA2_BRARE (Q9I9P9) Mothers against decapentaplegic homolog 2 (S...    28  4.6
MURA_VIBCH (Q9KP62) UDP-N-acetylglucosamine 1-carboxyvinyltransf...    28  4.6
MTA3_HUMAN (Q9BTC8) Metastasis associated protein MTA3                 28  4.6
MND2_YEAST (P40577) Anaphase promoting complex subunit MND2 (Mei...    28  4.6
MASY_PICAN (P21360) Malate synthase, glyoxysomal (EC 2.3.3.9)          28  4.6
SPRC_HUMAN (P09486) SPARC precursor (Secreted protein acidic and...    27  6.1

>MPR_BACSU (P39790) Extracellular metalloprotease precursor (EC
           3.4.21.-)
          Length = 313

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 5   ILTPNTTYVVYLITKVSHRVYGLDSAPAEVSVAMANKVQNGMAYLYNKYEDTMFY 59
           ++ PNT      +    H VY  D   A    A   +  NG +Y Y  Y  TMFY
Sbjct: 135 LVNPNT------VVTAGHCVYSQDHGWASTITAAPGR--NGSSYPYGTYSGTMFY 181


>METK_METKA (Q8TV85) S-adenosylmethionine synthetase (EC 2.5.1.6)
           (Methionine adenosyltransferase) (AdoMet synthetase)
          Length = 397

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 20/81 (24%), Positives = 40/81 (48%), Gaps = 6/81 (7%)

Query: 36  VAMANKVQNGMAYLYNKYEDTMFYENHRKMERNKLMED----NKEIRVPSKRDDGWMEIE 91
           V +AN    G+ Y      + + YE  RK+   KL +D     ++++V + R+D  +E+ 
Sbjct: 152 VPLANDTSFGVGYAPLTTTERLVYETERKINSPKLKKDLPEVGEDVKVMALREDNKIELT 211

Query: 92  LGEFFCGE--VDMEVKMSVME 110
           +      +   D++  +SV+E
Sbjct: 212 VAAAMVSQRIDDIDHYISVVE 232


>YA95_PORGI (Q7MVG9) Hypothetical RNA methyltransferase PG1095 (EC
           2.1.1.-)
          Length = 465

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 16/59 (27%), Positives = 26/59 (43%), Gaps = 7/59 (11%)

Query: 6   LTPNTTYVVYLITKVSHRVYGLDSAPAEVSVAMANKVQNGMAYLYNKYEDTMFYENHRK 64
           L   T  +   +   +HRV G++  P  +  A  N + NG+       E+T+FY    K
Sbjct: 321 LYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGI-------ENTLFYAGDMK 372


>Y188_CLOPE (P26832) Hypothetical protein CPE0188
          Length = 295

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 61  NHRKMERNKLMEDNKEIRVPSKRDDGWMEIELGEFFCGEVDMEVKMSVMEVGYRLKGGLI 120
           N+  +E  K++E+  E  +P   ++      LGEFF G       M+ + +G  + G LI
Sbjct: 86  NYTGVEVKKILEE--EFNLPCFVENDVNCAALGEFFGGAGKGTHSMACLTIGTGIGGALI 143

Query: 121 VEG 123
           ++G
Sbjct: 144 IDG 146


>Y123_TREPA (O83160) Hypothetical protein TP0123
          Length = 856

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 8   PNTTYVVYLITKVSHRVYGLDSAPAEVSVAMANKV-QNGMAYLYNKYEDTMFYENH 62
           P+    +YL   VS+RV+G ++A     ++ A KV Q  +AY+        F +++
Sbjct: 785 PSAALFLYLCYDVSYRVHGAEAAVTTAHLSRAFKVMQRSVAYMSENTVRAQFMQDN 840


>N192_YEAST (P47054) Nucleoporin NUP192 (Nuclear pore protein NUP192)
          Length = 1683

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 6    LTPNTTYVVYLITKVSHRVYGLDSAPAEVSVAMANKVQNGMAYLYNKYEDTMFYENHRKM 65
            L  NT Y V L + +    YG    P E      N   N      NKY     Y+ H KM
Sbjct: 1184 LISNTMYSVRLFSFLDPLNYGNICEPKETLSIFTNVPLNLEQVTLNKYCSGNIYDFH-KM 1242

Query: 66   ERNKLMEDNKEIRVPSKRDDGWMEIELGEFFCGEVDME 103
            E   LM   K +R  S   + +      E F  + D+E
Sbjct: 1243 E--NLMRLIKRVRAESLHSNSFSLTVSKEQFLKDADVE 1278


>TOM1_YEAST (Q03280) E3 ubiquitin protein ligase TOM1 (EC 6.3.2.-)
            (Temperature dependent-organization in mitotic nucleus
            protein 1) (Suppressor of snRNA protein 2)
          Length = 3268

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 20/87 (22%), Positives = 43/87 (48%), Gaps = 5/87 (5%)

Query: 41   KVQNGMAYLYNKYEDTMFYENHRKMERNKLMEDNKE---IRVPSKRDDGWMEIELGEFFC 97
            K+ +G   L  K    + ++N R     KL  DN+E   + +  +R+  +++     FF 
Sbjct: 2872 KLMSGPFALLVKNPKVLDFDNKRYFFNAKLKSDNQERPKLPITVRREQVFLDSYRALFF- 2930

Query: 98   GEVDMEVKMSVMEVGYRLKGGLIVEGI 124
             + + E+K S +E+ ++ + G+   G+
Sbjct: 2931 -KTNDEIKNSKLEITFKGESGVDAGGV 2956


>SSRP_AQUAE (O66640) SsrA-binding protein
          Length = 157

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 41 KVQNGMAYLYNKYEDTMFY---ENHRKMERNKLMEDNKEI 77
          +++NG A+LYN Y     +   ENH  + + KL+   +EI
Sbjct: 54 RIENGEAWLYNLYIAPYKHATIENHDPLRKRKLLLHKREI 93


>PLEC_CAUCR (P37894) Non-motile and phage-resistance protein (EC
           2.7.3.-)
          Length = 842

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 35  SVAMANKVQNGMAYLYNKYE-DTMFYENHRKMERNKLMEDNKEIRVPSKRDDGWMEIELG 93
           +VA   + Q  +A L  KYE + +  E+  K +   L   + E+R P    +G+ EI + 
Sbjct: 569 AVAGLERSQEQLAELARKYETEKVKAESANKAKSEFLANMSHELRTPLNAINGFSEIMMN 628

Query: 94  EFF 96
           E F
Sbjct: 629 EMF 631


>MTA3_MOUSE (Q924K8) Metastasis associated protein MTA3
          Length = 591

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 18/48 (37%), Positives = 25/48 (51%), Gaps = 2/48 (4%)

Query: 35  SVAMANKVQNGMAYLYNKYEDTMFYENHRKMERNKLMEDNKEIRVPSK 82
           SVA+ N+ ++ ++YL    EDT FY          L+ D  EIRV  K
Sbjct: 110 SVALLNETESVLSYLDK--EDTFFYSLVYDPSVKTLLADKGEIRVGPK 155


>CHLN_ANTFO (Q85A72) Light-independent protochlorophyllide reductase
           subunit N (EC 1.18.-.-) (LI-POR subunit N) (DPOR subunit
           N)
          Length = 471

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 33  EVSVAMANKVQNGMAYLYNKYEDTMFYE-NHRKMERNKLMEDNKEIR 78
           E+ V +     NG+ Y + + EDT+     HR  ER+ L+++NK I+
Sbjct: 126 ELGVPIVVARANGLDYAFTQGEDTVLAAMAHRCPERDLLIDENKVIQ 172


>APCE_SYNY4 (Q02907) Phycobilisome 100.5 kDa core-membrane linker
           polypeptide (L-CM 100.5) (Anchor polypeptide)
          Length = 896

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 10/55 (18%)

Query: 37  AMANKVQNGMAYLYNKYEDTMFYE--------NHRKMER--NKLMEDNKEIRVPS 81
           A    + NGM YL    EDT+ Y         N    ER  NKL + +KE+ VPS
Sbjct: 833 AFIGAMVNGMEYLQTFGEDTVPYRRFPTLPAANFPNTERLYNKLTKQDKELVVPS 887


>TFB1_SULSO (P58111) Transcription initiation factor IIB 1 (TFIIB 1)
          Length = 309

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 12/43 (27%), Positives = 21/43 (47%)

Query: 70  LMEDNKEIRVPSKRDDGWMEIELGEFFCGEVDMEVKMSVMEVG 112
           L E+NK +  P   D    + E GE+ C E    ++  +++ G
Sbjct: 4   LSEENKSVSTPCPPDKIIFDAERGEYICSETGEVLEDKIIDQG 46


>TF2B_SULSH (P50387) Transcription initiation factor IIB (TFIIB)
          Length = 309

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 12/43 (27%), Positives = 21/43 (47%)

Query: 70  LMEDNKEIRVPSKRDDGWMEIELGEFFCGEVDMEVKMSVMEVG 112
           L E+NK +  P   D    + E GE+ C E    ++  +++ G
Sbjct: 4   LSEENKSVSTPCPPDKIIFDAERGEYICSETGEVLEDKIIDQG 46


>SMA2_BRARE (Q9I9P9) Mothers against decapentaplegic homolog 2 (SMAD
           2) (Mothers against DPP homolog 2) (Smad2)
          Length = 468

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 18/68 (26%), Positives = 31/68 (45%)

Query: 30  APAEVSVAMANKVQNGMAYLYNKYEDTMFYENHRKMERNKLMEDNKEIRVPSKRDDGWME 89
           +PAE+S +  + V +GM      Y +  F+ +    E N+ + +      PS   DG+ +
Sbjct: 246 SPAELSPSTLSPVNHGMDLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTD 305

Query: 90  IELGEFFC 97
               E FC
Sbjct: 306 PSNSERFC 313


>MURA_VIBCH (Q9KP62) UDP-N-acetylglucosamine
           1-carboxyvinyltransferase (EC 2.5.1.7) (Enoylpyruvate
           transferase) (UDP-N-acetylglucosamine enolpyruvyl
           transferase) (EPT)
          Length = 419

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 17/52 (32%), Positives = 23/52 (43%), Gaps = 1/52 (1%)

Query: 73  DNKEIRVPS-KRDDGWMEIELGEFFCGEVDMEVKMSVMEVGYRLKGGLIVEG 123
           +N+ + VP  KR     EIE     CG+VD      VM    R    L++ G
Sbjct: 330 ENRFMHVPELKRMGAKAEIEGNTVICGDVDRLSGAQVMATDLRASASLVIAG 381


>MTA3_HUMAN (Q9BTC8) Metastasis associated protein MTA3
          Length = 594

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 2/45 (4%)

Query: 35  SVAMANKVQNGMAYLYNKYEDTMFYENHRKMERNKLMEDNKEIRV 79
           SVA+ N+ ++ ++YL    EDT FY          L+ D  EIRV
Sbjct: 110 SVALLNETESVLSYLDK--EDTFFYSLVYDPSLKTLLADKGEIRV 152


>MND2_YEAST (P40577) Anaphase promoting complex subunit MND2
           (Meiotic nuclear division protein 2)
          Length = 368

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 4   HILTPNTTYVVYLITKVSHRVYGLDSAPAEVSVAMANKVQNGMAYLYNKYEDTMFYENHR 63
           HIL  N  Y           V GL S P +    +AN   N         ED + Y+   
Sbjct: 174 HILQENEEY------DTGEGVTGLHSMPNDSMAILANNSANNSQNEEVSEEDEISYDYDA 227

Query: 64  KMERNKLMEDNKEIRVPSKRDDG 86
           + +     +DN+E  VP +  +G
Sbjct: 228 EFDHVVDEDDNEEGEVPGEGVEG 250


>MASY_PICAN (P21360) Malate synthase, glyoxysomal (EC 2.3.3.9)
          Length = 555

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 40  NKVQNGMAYLYNKYEDTMFYENHRKMERNKLMEDNKEIRVPSKRDDGWMEIELGEFFCGE 99
           N +  G   LY+   D + + N    +R K+  + + + V   R  GW  ++      GE
Sbjct: 136 NNMIYGQVNLYDAIRDRIDFTNEATGKRYKINREGRRVPVMIVRPRGWHMVDKHILVDGE 195

Query: 100 VDMEVKMSVMEVG 112
               +  S+M+ G
Sbjct: 196 ---PISASIMDFG 205


>SPRC_HUMAN (P09486) SPARC precursor (Secreted protein acidic and
           rich in cysteine) (Osteonectin) (ON) (Basement membrane
           protein BM-40)
          Length = 303

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 14/51 (27%), Positives = 25/51 (48%)

Query: 27  LDSAPAEVSVAMANKVQNGMAYLYNKYEDTMFYENHRKMERNKLMEDNKEI 77
           LDS   E  + M + ++N +  LY + ED       +K+   K+ E+ K +
Sbjct: 156 LDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRL 206


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,835,015
Number of Sequences: 164201
Number of extensions: 563130
Number of successful extensions: 1395
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1387
Number of HSP's gapped (non-prelim): 31
length of query: 129
length of database: 59,974,054
effective HSP length: 105
effective length of query: 24
effective length of database: 42,732,949
effective search space: 1025590776
effective search space used: 1025590776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)


Medicago: description of AC147963.2