BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147875.3 + phase: 0
(293 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NOTC_XENLA (P21783) Neurogenic locus notch protein homolog precu... 33 0.64
JAG1_RAT (Q63722) Jagged 1 precursor (Jagged1) 33 1.1
JAG1_MOUSE (Q9QXX0) Jagged 1 precursor (Jagged1) 33 1.1
MPRG_BRARE (Q7ZVH1) Membrane progestin receptor gamma (mPR gamma) 32 1.4
LRP1_CHICK (P98157) Low-density lipoprotein receptor-related pro... 32 1.4
JG1B_BRARE (Q90Y54) Jagged 1b precursor (Jagged1b) (Jagged3) 32 2.4
JAG2_HUMAN (Q9Y219) Jagged 2 precursor (Jagged2) (HJ2) 31 3.2
LR1B_HUMAN (Q9NZR2) Low-density lipoprotein receptor-related pro... 31 4.1
JAG1_HUMAN (P78504) Jagged 1 precursor (Jagged1) (hJ1) 31 4.1
CGGR_BACSU (O32253) Central glycolytic genes regulator 31 4.1
UVRC_MYCTU (P67426) UvrABC system protein C (UvrC protein) (Exci... 30 5.4
UVRC_MYCBO (P67427) UvrABC system protein C (UvrC protein) (Exci... 30 5.4
SNE2_HUMAN (Q8WXH0) Nesprin 2 (Nuclear envelope spectrin repeat ... 30 5.4
SCXE_BUTOC (Q17254) Neurotoxin XIV precursor (Bot14) (BotXIV) 30 5.4
NTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precu... 30 5.4
NTC3_MOUSE (Q61982) Neurogenic locus notch homolog protein 3 pre... 30 5.4
NTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 pre... 30 5.4
FBN2_MOUSE (Q61555) Fibrillin 2 precursor 30 5.4
DAPF_BUCAI (P57649) Diaminopimelate epimerase (EC 5.1.1.7) (DAP ... 30 5.4
JAG2_RAT (P97607) Jagged 2 (Jagged2) (Fragment) 30 7.1
>NOTC_XENLA (P21783) Neurogenic locus notch protein homolog
precursor (XOTCH protein)
Length = 2524
Score = 33.5 bits (75), Expect = 0.64
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 232 HECQSS----GGHCGYESSSREFTCFCKDGSFPHSCSSGEHHCRFHCCV 276
+EC S+ GG C + FTC C DG H C S + C + C+
Sbjct: 679 NECDSNPCRNGGTC--KDQINGFTCVCPDGYHDHMCLSEVNECNSNPCI 725
>JAG1_RAT (Q63722) Jagged 1 precursor (Jagged1)
Length = 1219
Score = 32.7 bits (73), Expect = 1.1
Identities = 30/101 (29%), Positives = 43/101 (41%), Gaps = 19/101 (18%)
Query: 185 RTCKSRVVVPFLESEAERVATNSS------VENLKDVIDNGF-GVEWN-ANNSLC--HEC 234
+TC SR +S+ + N+ V+ K + G+ G N A NS C + C
Sbjct: 700 KTCHSR------DSQCDEATCNNGGTCYDEVDTFKCMCPGGWEGTTCNIARNSSCLPNPC 753
Query: 235 QSSGGHCGYESSSREFTCFCKDGSFPHSCSSGEHHCRFHCC 275
+ GG C S FTC CK+G C+ + C H C
Sbjct: 754 HN-GGTCVVNGDS--FTCVCKEGWEGPICTQNTNDCSPHPC 791
>JAG1_MOUSE (Q9QXX0) Jagged 1 precursor (Jagged1)
Length = 1218
Score = 32.7 bits (73), Expect = 1.1
Identities = 30/101 (29%), Positives = 43/101 (41%), Gaps = 19/101 (18%)
Query: 185 RTCKSRVVVPFLESEAERVATNSS------VENLKDVIDNGF-GVEWN-ANNSLC--HEC 234
+TC SR +S+ + N+ V+ K + G+ G N A NS C + C
Sbjct: 700 KTCHSR------DSQCDEATCNNGGTCYDEVDTFKCMCPGGWEGTTCNIARNSSCLPNPC 753
Query: 235 QSSGGHCGYESSSREFTCFCKDGSFPHSCSSGEHHCRFHCC 275
+ GG C S FTC CK+G C+ + C H C
Sbjct: 754 HN-GGTCVVNGDS--FTCVCKEGWEGPICTQNTNDCSPHPC 791
>MPRG_BRARE (Q7ZVH1) Membrane progestin receptor gamma (mPR gamma)
Length = 345
Score = 32.3 bits (72), Expect = 1.4
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Query: 119 CTFFDYGSDSHNLTLYYDCPHTPFLMPDSFSPQFNCSINGTQMVNYFMLESVADNAESLD 178
C FFDYG+ S +L ++ + PD + +NGT +NY + V +
Sbjct: 116 CFFFDYGALSF-YSLGSAIIYSSYSFPDKW-------VNGTFHLNYVSIAVV-------N 160
Query: 179 SFSETLRTCKSRVVVPFLE 197
S T C SR+ +PFLE
Sbjct: 161 SIISTALACYSRLGLPFLE 179
>LRP1_CHICK (P98157) Low-density lipoprotein receptor-related protein
1 precursor (LRP) (Alpha-2-macroglobulin receptor) (A2MR)
Length = 4543
Score = 32.3 bits (72), Expect = 1.4
Identities = 13/40 (32%), Positives = 18/40 (44%), Gaps = 2/40 (5%)
Query: 231 CHECQSSGGHCGYESSSREFTCFCKDGSFPHSCSSGEHHC 270
C CQ G C S + +C C DG SC + + +C
Sbjct: 4343 CSRCQE--GKCNINRQSGDVSCICPDGKIAPSCLTCDSYC 4380
>JG1B_BRARE (Q90Y54) Jagged 1b precursor (Jagged1b) (Jagged3)
Length = 1213
Score = 31.6 bits (70), Expect = 2.4
Identities = 18/52 (34%), Positives = 25/52 (47%), Gaps = 5/52 (9%)
Query: 226 ANNSLC--HECQSSGGHCGYESSSREFTCFCKDGSFPHSCSSGEHHCRFHCC 275
A NS C + C++ GG C S F C CK+G +C+ + C H C
Sbjct: 740 AKNSSCLPNPCEN-GGTCVVNGDS--FNCVCKEGWEGSTCTENTNDCNPHPC 788
>JAG2_HUMAN (Q9Y219) Jagged 2 precursor (Jagged2) (HJ2)
Length = 1238
Score = 31.2 bits (69), Expect = 3.2
Identities = 14/44 (31%), Positives = 21/44 (46%), Gaps = 2/44 (4%)
Query: 232 HECQSSGGHCGYESSSREFTCFCKDGSFPHSCSSGEHHCRFHCC 275
H C ++GG C + ++ C C DG +C EH C + C
Sbjct: 315 HPC-TNGGTC-INAEPDQYRCTCPDGYSGRNCEKAEHACTSNPC 356
>LR1B_HUMAN (Q9NZR2) Low-density lipoprotein receptor-related protein
1B precursor (Low-density lipoprotein receptor-related
protein-deleted in tumor) (LRP-DIT)
Length = 4599
Score = 30.8 bits (68), Expect = 4.1
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 231 CHECQSSGGHCGYESSSREFTCFCKDGSFPHSCSSGEHHC 270
C C GGHC S + C C +G SC + +C
Sbjct: 4361 CVRCH--GGHCIINKDSEDIFCNCTNGKIASSCQLCDGYC 4398
>JAG1_HUMAN (P78504) Jagged 1 precursor (Jagged1) (hJ1)
Length = 1218
Score = 30.8 bits (68), Expect = 4.1
Identities = 19/52 (36%), Positives = 24/52 (45%), Gaps = 5/52 (9%)
Query: 226 ANNSLC--HECQSSGGHCGYESSSREFTCFCKDGSFPHSCSSGEHHCRFHCC 275
A NS C + C + GG C S FTC CK+G C+ + C H C
Sbjct: 743 ARNSSCLPNPCHN-GGTCVVNGES--FTCVCKEGWEGPICAQNTNDCSPHPC 791
>CGGR_BACSU (O32253) Central glycolytic genes regulator
Length = 340
Score = 30.8 bits (68), Expect = 4.1
Identities = 22/67 (32%), Positives = 34/67 (49%), Gaps = 7/67 (10%)
Query: 179 SFSETLRTCKSRVVVPFLESEAERVAT--NSSVENLKDVIDN-----GFGVEWNANNSLC 231
S E L T KS ++ EA+ +A N+ +E+LK + DN FG +NA+ +
Sbjct: 223 SVKEVLNTIKSASMLVHGIGEAKTMAQRRNTPLEDLKKIDDNDAVTEAFGYYFNADGEVV 282
Query: 232 HECQSSG 238
H+ S G
Sbjct: 283 HKVHSVG 289
>UVRC_MYCTU (P67426) UvrABC system protein C (UvrC protein)
(Excinuclease ABC subunit C)
Length = 646
Score = 30.4 bits (67), Expect = 5.4
Identities = 16/49 (32%), Positives = 25/49 (50%)
Query: 157 NGTQMVNYFMLESVADNAESLDSFSETLRTCKSRVVVPFLESEAERVAT 205
+G Q+V F+ + D A D+ E+ V+VP L S AE +A+
Sbjct: 298 SGIQLVEQFLTQFYGDQAALDDAADESANPVPREVLVPCLPSNAEELAS 346
>UVRC_MYCBO (P67427) UvrABC system protein C (UvrC protein)
(Excinuclease ABC subunit C)
Length = 646
Score = 30.4 bits (67), Expect = 5.4
Identities = 16/49 (32%), Positives = 25/49 (50%)
Query: 157 NGTQMVNYFMLESVADNAESLDSFSETLRTCKSRVVVPFLESEAERVAT 205
+G Q+V F+ + D A D+ E+ V+VP L S AE +A+
Sbjct: 298 SGIQLVEQFLTQFYGDQAALDDAADESANPVPREVLVPCLPSNAEELAS 346
>SNE2_HUMAN (Q8WXH0) Nesprin 2 (Nuclear envelope spectrin repeat
protein 2) (Syne-2) (Synaptic nuclear envelope protein 2)
(Nucleus and actin connecting element protein) (NUANCE
protein)
Length = 6885
Score = 30.4 bits (67), Expect = 5.4
Identities = 21/67 (31%), Positives = 35/67 (51%), Gaps = 6/67 (8%)
Query: 160 QMVNYFMLESVADNAESLDSFSETLRTCKSRVVVPFLESEAERV----ATNSSVENLKDV 215
Q +N +SVA+ + D+++ L +SRV L E ER+ A V L+DV
Sbjct: 4658 QSLNEISGQSVAEQLQKADAYTVELENAESRVAK--LRDEGERLHLPYALLQEVYKLEDV 4715
Query: 216 IDNGFGV 222
+D+ +G+
Sbjct: 4716 LDSMWGM 4722
>SCXE_BUTOC (Q17254) Neurotoxin XIV precursor (Bot14) (BotXIV)
Length = 85
Score = 30.4 bits (67), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 228 NSLCHECQSSGGHCGYESSSREFTCFCKD 256
++LC E ++ GHCG++S C+CKD
Sbjct: 42 DTLCKENGATSGHCGHKSGHGS-ACWCKD 69
>NTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3
precursor (Notch 3)
Length = 2319
Score = 30.4 bits (67), Expect = 5.4
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 232 HECQSS----GGHCGYESSSREFTCFCKDGSFPHSCSSGEHHCRFHCC 275
+EC SS GG C F C C GS P C H C C
Sbjct: 661 NECASSPCGEGGSC--VDGENGFHCLCPPGSLPPLCLPANHPCAHKPC 706
>NTC3_MOUSE (Q61982) Neurogenic locus notch homolog protein 3
precursor (Notch 3)
Length = 2318
Score = 30.4 bits (67), Expect = 5.4
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 232 HECQSS----GGHCGYESSSREFTCFCKDGSFPHSCSSGEHHCRFHCC 275
+EC SS GG C F C C GS P C H C C
Sbjct: 660 NECASSPCGEGGSC--VDGENGFHCLCPPGSLPPLCLPANHPCAHKPC 705
>NTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3
precursor (Notch 3)
Length = 2321
Score = 30.4 bits (67), Expect = 5.4
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 232 HECQSS----GGHCGYESSSREFTCFCKDGSFPHSCSSGEHHCRFHCC 275
+EC SS GG C F C C GS P C H C C
Sbjct: 659 NECASSPCGEGGSC--VDGENGFRCLCPPGSLPPLCLPPSHPCAHEPC 704
>FBN2_MOUSE (Q61555) Fibrillin 2 precursor
Length = 2907
Score = 30.4 bits (67), Expect = 5.4
Identities = 19/55 (34%), Positives = 25/55 (44%), Gaps = 9/55 (16%)
Query: 221 GVEWNANNSLCH---ECQSSGGHCGYESSSRE--FTCFCKDGSFPHSCSSGEHHC 270
G ++ +S CH EC SS C Y S+ E + C C G F G+ HC
Sbjct: 2676 GFSFDQFSSACHDVNECSSSKNPCSYGCSNTEGGYLCGCPPGYF----RVGQGHC 2726
>DAPF_BUCAI (P57649) Diaminopimelate epimerase (EC 5.1.1.7) (DAP
epimerase)
Length = 284
Score = 30.4 bits (67), Expect = 5.4
Identities = 20/91 (21%), Positives = 38/91 (40%), Gaps = 11/91 (12%)
Query: 157 NGTQMVNYFMLESVADNAESLDSFSETLRTCKSRVVVPFLESEAERVATNS------SVE 210
NG + F+L N + + + T K + + FL +V N ++
Sbjct: 85 NGARCFGLFLLLKGLTNKKKI-----LISTKKKPLTIEFLTENMIKVNMNEPDFKFYNLS 139
Query: 211 NLKDVIDNGFGVEWNANNSLCHECQSSGGHC 241
+L++V+DN F ++ N +C+ HC
Sbjct: 140 SLQNVLDNNFSIKLMNENLICNLVSIGNPHC 170
>JAG2_RAT (P97607) Jagged 2 (Jagged2) (Fragment)
Length = 1202
Score = 30.0 bits (66), Expect = 7.1
Identities = 14/44 (31%), Positives = 20/44 (44%), Gaps = 2/44 (4%)
Query: 232 HECQSSGGHCGYESSSREFTCFCKDGSFPHSCSSGEHHCRFHCC 275
H C + GG C + ++ C C DG +C EH C + C
Sbjct: 269 HPCVN-GGTC-INAEPDQYLCACPDGYLGKNCERAEHACASNPC 310
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.133 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,472,645
Number of Sequences: 164201
Number of extensions: 1394124
Number of successful extensions: 3517
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3446
Number of HSP's gapped (non-prelim): 94
length of query: 293
length of database: 59,974,054
effective HSP length: 109
effective length of query: 184
effective length of database: 42,076,145
effective search space: 7742010680
effective search space used: 7742010680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Medicago: description of AC147875.3