BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147714.4 - phase: 0 /pseudo
(1920 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 119 6e-26
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 108 1e-22
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 96 1e-18
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 96 1e-18
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 95 2e-18
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 95 2e-18
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 94 3e-18
POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.2... 94 3e-18
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 94 5e-18
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 94 5e-18
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 94 5e-18
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 93 6e-18
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 93 8e-18
POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse transcript... 92 1e-17
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 91 3e-17
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 86 1e-15
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 86 1e-15
POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse transcript... 85 2e-15
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 83 6e-15
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 83 6e-15
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 119 bits (299), Expect = 6e-26
Identities = 99/381 (25%), Positives = 169/381 (43%), Gaps = 29/381 (7%)
Query: 1549 RNYDMVLLRCV----DEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCY 1604
+N + LL V +E E E ++ +HD TG T + ++ YYW M
Sbjct: 874 KNLKVALLNPVTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIK 933
Query: 1605 QHARKCHKCQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDY 1664
++ RKC KCQ H + F V +D IG + PK+ NG+ + + I
Sbjct: 934 EYVRKCQKCQKAKTTKHTKTPMTITETPEHAFDRVVVDTIGPL-PKSENGNEYAVTLICD 992
Query: 1665 FTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEH 1724
TK++ A N + + VAK I + I +YG ITD GT N+++ LC+ KI++
Sbjct: 993 LTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKN 1052
Query: 1725 HNSSPYRPQINGVVEAANKNIKRIVQKMVTTYR-DWHEMLPYALHGYRTTVRSSTGATPF 1783
S+ + Q GVVE +++ + ++ ++T + DW L Y ++ + TT P+
Sbjct: 1053 ITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPY 1112
Query: 1784 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARG----QS 1839
LV+G + LP KL E + D + + A AR ++
Sbjct: 1113 ELVFGRTSNLPKHFN----------KLHSIEPIYNIDDYAKESKYRLEVAYARARKLLEA 1162
Query: 1840 YQARMKTAFDKKVHPREFKEGELVLKRRISQQPDPRGKWTPNYEGSYVVKK-AFSGGALI 1898
++ + K +D KV E + G+ VL R + K Y G Y ++ + +
Sbjct: 1163 HKEKNKENYDLKVKDIELEVGDKVLLRN-----EVGHKLDFKYTGPYKIESIGDNNNITL 1217
Query: 1899 LTHMDGVELPNPVNADLVKKY 1919
LT+ + ++ V+ D +KK+
Sbjct: 1218 LTNKNKKQI---VHKDRLKKF 1235
Score = 34.3 bits (77), Expect = 3.4
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
+ Y S+ T E+ + E+ A+ WA R Y+ + + P+ Y+F +
Sbjct: 642 VAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPS 701
Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILAD 1294
K+ R ++ L EY+ + K K + +AD
Sbjct: 702 SKLTRIRLELEEYNFTVEYLKG-KDNHVAD 730
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 108 bits (270), Expect = 1e-22
Identities = 139/597 (23%), Positives = 242/597 (40%), Gaps = 53/597 (8%)
Query: 1314 EEIVY--LKSKDCEEPLIGEGPDPNS--KWGLVFDGAANAYGKGIGAVIVSP----QGHH 1365
+EI + LK C+ P++ + PD + K F +A KGIGAV+ Q H
Sbjct: 1212 QEIAFQELKKLVCQTPVLAQ-PDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHP 1270
Query: 1366 IPFTAQILF--ECTNNMVEYEACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHA 1423
I F ++ L E ++ + EA + +R IYG + + K
Sbjct: 1271 IAFASKALSPAETRYHITDLEA----LAMMFALRRFKTIIYGTAITVFTDHKPLISLLKG 1326
Query: 1424 KLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLER 1483
+ R + + V++ ++ N +ADAL+ P +++ E+
Sbjct: 1327 SPLADRLWRWSIEILEFDVKIVYLAGKANAVADALSR----------GGCPPNELEE-EQ 1375
Query: 1484 PSHVFTIGDVIDQAGENMVDNKPWYYDIK-------QCLLSREYPPGASNKDKKTLRRLA 1536
+ +I + I +++D+ W +K + + + E G K + +
Sbjct: 1376 TKELTSIVNAIQTELPDILDSSCWLERLKGEDEGWKEVIAALE---GGKTKGTFKIVGIE 1432
Query: 1537 SRFLLD-----GDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLR 1591
S L+ G +L + V E L+ ++H+G H M R + R
Sbjct: 1433 SEISLEYYKIVGGVLKNTEIEEQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHR 1492
Query: 1592 AGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKA 1651
+YW M R C KC D + +L +P +V D++ +
Sbjct: 1493 K-FYWPQMRVCVENCVRTCAKCLCANDHSKLTS-SLTPYRMTFPLEIVACDLMD--VGLS 1548
Query: 1652 SNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK-FIKNNIICRYGVPSKIITDNGTNLNN 1710
G+R+IL ID FTK+ A + + V K F++ I +P K++TD G N
Sbjct: 1549 VQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVN 1608
Query: 1711 NVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMVTTYRDWHEMLPYALHGY 1770
+ KIEH + Y + NG VE NK I I++K +W + + YA++ Y
Sbjct: 1609 GLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPMEWDDQVVYAVYAY 1668
Query: 1771 RTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKR 1830
V +TG TP L++G + + PLE+ I A + E + ++ + L + + +
Sbjct: 1669 NNCVHENTGETPMFLMHGRDVMGPLEMSGEDAVGINYADMDEYKHLLTQ-ELLKVQKIAK 1727
Query: 1831 MDAMARGQSYQARMKTAFDKKVHPREFKEGELVL-----KRRISQQPDPRGKWTPNY 1882
AM +SY++ + K H R + G VL ++ +Q P KW+ Y
Sbjct: 1728 EHAMREQESYKSLFDQKYASKKH-RFPQPGSRVLLEIPSEKLGAQCPKLVNKWSGPY 1783
Score = 35.4 bits (80), Expect = 1.5
Identities = 16/75 (21%), Positives = 38/75 (50%)
Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
I + SK L+ ETRY + + A+ +A +R + + + + P+ + + + +
Sbjct: 1271 IAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSPLA 1330
Query: 1265 GKIARWQVLLSEYDI 1279
++ RW + + E+D+
Sbjct: 1331 DRLWRWSIEILEFDV 1345
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 95.5 bits (236), Expect = 1e-18
Identities = 74/237 (31%), Positives = 114/237 (47%), Gaps = 20/237 (8%)
Query: 1654 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVV 1713
G++++LV ID F+ WVEA T +VV K + I R+G+P + TDNG + V
Sbjct: 931 GYKYLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 990
Query: 1714 QALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQK--MVTTYRDWHEMLPYALHGYR 1771
Q + + ++ YRPQ +G VE N+ IK + K + T RDW +LP AL+ R
Sbjct: 991 QTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 1050
Query: 1772 TTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRM 1831
T G TP+ ++YG P V P + AK++ Q+ L LV+ +
Sbjct: 1051 NT-PGPHGLTPYEILYGAP---PPLVNFPDPDM---AKVTHNPSLQAHLQALYLVQHEVW 1103
Query: 1832 DAMARGQSYQARMKTAFDKKVHPREFKEGELVLKRRISQQPDPRGKWTPNYEGSYVV 1888
+A +YQ ++ D+ V P F+ G+ V RR + P ++G Y V
Sbjct: 1104 RPLA--AAYQEQL----DRPVVPHPFRVGDTVWVRRHQTK-----NLEPRWKGPYTV 1149
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonuclease)
(Fragment)
Length = 390
Score = 95.5 bits (236), Expect = 1e-18
Identities = 86/319 (26%), Positives = 143/319 (43%), Gaps = 33/319 (10%)
Query: 1578 THATGHTMSRKLLR--AGYYWLTMEHDCYQHARKCHKC-QIYADKIHVPPHAL---NVIS 1631
TH + M L R + YY L + ++ A C C Q+ A K + + +
Sbjct: 60 THLSYQKMRALLDRKESPYYMLNKDKILHEVAESCQACVQVNASKTKIRAGTRVRGHRLG 119
Query: 1632 SPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNII 1691
+ W ++P G++++LV +D F+ WVEA + T ++V K + I
Sbjct: 120 THWEIDFT------EVKP-GLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIF 172
Query: 1692 CRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQK 1751
R+G+P + TDNG + V Q++ + I+ YRPQ +G VE N+ IK + K
Sbjct: 173 PRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTK 232
Query: 1752 --MVTTYRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAK 1809
+ T RDW +LP AL+ R T G TP+ ++YG L + P + +K
Sbjct: 233 LTLATGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-VNFHDPEM-----SK 285
Query: 1810 LSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFKEGELVLKRRIS 1869
+ + Q+ L V+ + +A +YQ ++ D+ V P F+ G+ V RR
Sbjct: 286 FTNSPSLQAHLQALQAVQREVWKPLA--AAYQDQL----DQPVIPHPFRVGDTVWVRRHQ 339
Query: 1870 QQPDPRGKWTPNYEGSYVV 1888
+ P ++G Y V
Sbjct: 340 TK-----NLEPRWKGPYTV 353
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 95.1 bits (235), Expect = 2e-18
Identities = 73/237 (30%), Positives = 114/237 (47%), Gaps = 20/237 (8%)
Query: 1654 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVV 1713
G++++LV +D F+ WVEA T +VV K + I R+G+P + TDNG + V
Sbjct: 931 GYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 990
Query: 1714 QALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQK--MVTTYRDWHEMLPYALHGYR 1771
Q + + ++ YRPQ +G VE N+ IK + K + T RDW +LP AL+ R
Sbjct: 991 QTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 1050
Query: 1772 TTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRM 1831
T G TP+ ++YG P V P + AK++ Q+ L LV+ +
Sbjct: 1051 NT-PGPHGLTPYEILYGAP---PPLVNFPDPDM---AKVTHNPSLQAHLQALYLVQHEVW 1103
Query: 1832 DAMARGQSYQARMKTAFDKKVHPREFKEGELVLKRRISQQPDPRGKWTPNYEGSYVV 1888
+A +YQ ++ D+ V P F+ G+ V RR + P ++G Y V
Sbjct: 1104 RPLA--AAYQEQL----DRPVVPHPFRVGDTVWVRRHQTK-----NLEPRWKGPYTV 1149
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 95.1 bits (235), Expect = 2e-18
Identities = 73/237 (30%), Positives = 114/237 (47%), Gaps = 20/237 (8%)
Query: 1654 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVV 1713
G++++LV +D F+ WVEA T +VV K + I R+G+P + TDNG + V
Sbjct: 931 GYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 990
Query: 1714 QALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQK--MVTTYRDWHEMLPYALHGYR 1771
Q + + ++ YRPQ +G VE N+ IK + K + T RDW +LP AL+ R
Sbjct: 991 QTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 1050
Query: 1772 TTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRM 1831
T G TP+ ++YG P V P + AK++ Q+ L LV+ +
Sbjct: 1051 NT-PGPHGLTPYEILYGAP---PPLVNFPDPDM---AKVTHNPSLQAHLQALYLVQHEVW 1103
Query: 1832 DAMARGQSYQARMKTAFDKKVHPREFKEGELVLKRRISQQPDPRGKWTPNYEGSYVV 1888
+A +YQ ++ D+ V P F+ G+ V RR + P ++G Y V
Sbjct: 1104 RPLA--AAYQEQL----DRPVVPHPFRVGDTVWVRRHQTK-----NLEPRWKGPYTV 1149
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 94.4 bits (233), Expect = 3e-18
Identities = 89/330 (26%), Positives = 147/330 (43%), Gaps = 28/330 (8%)
Query: 1565 EQLMHDVHDGTFGTHATGHTMSRKLLRAG---YYWLTMEHDCYQHARKCHKC-QIYADKI 1620
+Q + ++ D G+ + LL G YY L + A C C Q+ A K
Sbjct: 222 DQFVFELLDSLHRLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKA 281
Query: 1621 HVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 1680
+ + P + ID ++P G++++LV +D F+ WVEA + T +
Sbjct: 282 KIGAGVR--VRGHRPGTHWEIDFT-EVKP-GLYGYKYLLVFVDTFSGWVEAFPTKHETAK 337
Query: 1681 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEA 1740
+V K + I R+G+P + TDNG + V Q++ + I+ YRPQ +G VE
Sbjct: 338 IVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVER 397
Query: 1741 ANKNIKRIVQK--MVTTYRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1798
N+ IK + K + T RDW +LP AL+ R T G TP+ ++YG L +
Sbjct: 398 MNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-VNFH 455
Query: 1799 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 1858
P + +K + + Q+ L V+ + +A +YQ ++ D+ V P F+
Sbjct: 456 DPEM-----SKFTNSPSLQAHLQALQAVQREVWKPLA--AAYQDQL----DQPVIPHPFR 504
Query: 1859 EGELVLKRRISQQPDPRGKWTPNYEGSYVV 1888
G+ V RR + P ++G Y V
Sbjct: 505 VGDTVWVRRHQTK-----NLEPRWKGPYTV 529
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 94.4 bits (233), Expect = 3e-18
Identities = 89/330 (26%), Positives = 147/330 (43%), Gaps = 28/330 (8%)
Query: 1565 EQLMHDVHDGTFGTHATGHTMSRKLLRAG---YYWLTMEHDCYQHARKCHKC-QIYADKI 1620
+Q + ++ D G+ + LL G YY L + A C C Q+ A K
Sbjct: 837 DQFVFELLDSLHRLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKA 896
Query: 1621 HVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 1680
+ + P + ID ++P G++++LV +D F+ WVEA + T +
Sbjct: 897 KIGAGVR--VRGHRPGTHWEIDFT-EVKP-GLYGYKYLLVFVDTFSGWVEAFPTKHETAK 952
Query: 1681 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEA 1740
+V K + I R+G+P + TDNG + V Q++ + I+ YRPQ +G VE
Sbjct: 953 IVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVER 1012
Query: 1741 ANKNIKRIVQK--MVTTYRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1798
N+ IK + K + T RDW +LP AL+ R T G TP+ ++YG L +
Sbjct: 1013 MNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-VNFH 1070
Query: 1799 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 1858
P + +K + + Q+ L V+ + +A +YQ ++ D+ V P F+
Sbjct: 1071 DPEM-----SKFTNSPSLQAHLQALQAVQREVWKPLA--AAYQDQL----DQPVIPHPFR 1119
Query: 1859 EGELVLKRRISQQPDPRGKWTPNYEGSYVV 1888
G+ V RR + P ++G Y V
Sbjct: 1120 VGDTVWVRRHQTK-----NLEPRWKGPYTV 1144
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 93.6 bits (231), Expect = 5e-18
Identities = 88/374 (23%), Positives = 163/374 (43%), Gaps = 31/374 (8%)
Query: 1525 SNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHT 1584
+N+DK+ + L DG ++ + D +LL D ++ H+ H
Sbjct: 879 NNEDKRVEENIQ---LKDGLLINSK--DQILLPN-DTQLTRTIIKKYHEEGKLIHPGIEL 932
Query: 1585 MSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVIS-SPWPFSMVGIDM 1643
++ +LR + W + ++ + CH CQI + H P L I S P+ + +D
Sbjct: 933 LTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDF 991
Query: 1644 IGRIEPKASNGHRFILVAIDYFTKWVEAASYT-NVTKQVVAKFIKNNIICRYGVPSKIIT 1702
I + S+G+ + V +D F+K T ++T + A+ +I +G P +II
Sbjct: 992 ITALPE--SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIA 1049
Query: 1703 DNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMVTTY-RDWHE 1761
DN + + ++ S PYRPQ +G E N+ ++++++ + +T+ W +
Sbjct: 1050 DNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVD 1109
Query: 1762 MLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEA-EWCQSRY 1820
+ Y + S+T TPF +V+ L +E+PS + E + Q+
Sbjct: 1110 HISLVQQSYNNAIHSATQMTPFEIVHRYSPALS-PLELPSFSDKTDENSQETIQVFQTVK 1168
Query: 1821 DQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHP-REFKEGELVL-KRRISQQPDPRGKW 1878
+ LN + +MK FD K+ EF+ G+LV+ KR + K
Sbjct: 1169 EHLN--------------TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKL 1214
Query: 1879 TPNYEGS-YVVKKA 1891
P++ G YV++K+
Sbjct: 1215 APSFAGPFYVLQKS 1228
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 93.6 bits (231), Expect = 5e-18
Identities = 88/374 (23%), Positives = 163/374 (43%), Gaps = 31/374 (8%)
Query: 1525 SNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHT 1584
+N+DK+ + L DG ++ + D +LL D ++ H+ H
Sbjct: 879 NNEDKRVEENIQ---LKDGLLINSK--DQILLPN-DTQLTRTIIKKYHEEGKLIHPGIEL 932
Query: 1585 MSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVIS-SPWPFSMVGIDM 1643
++ +LR + W + ++ + CH CQI + H P L I S P+ + +D
Sbjct: 933 LTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDF 991
Query: 1644 IGRIEPKASNGHRFILVAIDYFTKWVEAASYT-NVTKQVVAKFIKNNIICRYGVPSKIIT 1702
I + S+G+ + V +D F+K T ++T + A+ +I +G P +II
Sbjct: 992 ITALPE--SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIA 1049
Query: 1703 DNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMVTTY-RDWHE 1761
DN + + ++ S PYRPQ +G E N+ ++++++ + +T+ W +
Sbjct: 1050 DNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVD 1109
Query: 1762 MLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEA-EWCQSRY 1820
+ Y + S+T TPF +V+ L +E+PS + E + Q+
Sbjct: 1110 HISLVQQSYNNAIHSATQMTPFEIVHRYSPALS-PLELPSFSDKTDENSQETIQVFQTVK 1168
Query: 1821 DQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHP-REFKEGELVL-KRRISQQPDPRGKW 1878
+ LN + +MK FD K+ EF+ G+LV+ KR + K
Sbjct: 1169 EHLN--------------TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKL 1214
Query: 1879 TPNYEGS-YVVKKA 1891
P++ G YV++K+
Sbjct: 1215 APSFAGPFYVLQKS 1228
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 93.6 bits (231), Expect = 5e-18
Identities = 88/374 (23%), Positives = 163/374 (43%), Gaps = 31/374 (8%)
Query: 1525 SNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHT 1584
+N+DK+ + L DG ++ + D +LL D ++ H+ H
Sbjct: 879 NNEDKRVEENIQ---LKDGLLINSK--DQILLPN-DTQLTRTIIKKYHEEGKLIHPGIEL 932
Query: 1585 MSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVIS-SPWPFSMVGIDM 1643
++ +LR + W + ++ + CH CQI + H P L I S P+ + +D
Sbjct: 933 LTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDF 991
Query: 1644 IGRIEPKASNGHRFILVAIDYFTKWVEAASYT-NVTKQVVAKFIKNNIICRYGVPSKIIT 1702
I + S+G+ + V +D F+K T ++T + A+ +I +G P +II
Sbjct: 992 ITALPE--SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIA 1049
Query: 1703 DNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMVTTY-RDWHE 1761
DN + + ++ S PYRPQ +G E N+ ++++++ + +T+ W +
Sbjct: 1050 DNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVD 1109
Query: 1762 MLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEA-EWCQSRY 1820
+ Y + S+T TPF +V+ L +E+PS + E + Q+
Sbjct: 1110 HISLVQQSYNNAIHSATQMTPFEIVHRYSPALS-PLELPSFSDKTDENSQETIQVFQTVK 1168
Query: 1821 DQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHP-REFKEGELVL-KRRISQQPDPRGKW 1878
+ LN + +MK FD K+ EF+ G+LV+ KR + K
Sbjct: 1169 EHLN--------------TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKL 1214
Query: 1879 TPNYEGS-YVVKKA 1891
P++ G YV++K+
Sbjct: 1215 APSFAGPFYVLQKS 1228
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 93.2 bits (230), Expect = 6e-18
Identities = 88/330 (26%), Positives = 148/330 (44%), Gaps = 28/330 (8%)
Query: 1565 EQLMHDVHDGTFGTHATGHTMSRKLLRAG---YYWLTMEHDCYQHARKCHKC-QIYADKI 1620
+Q + ++ D G+ + LL G YY L + A C C Q+ A K
Sbjct: 837 DQFVFELLDSLHRLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKA 896
Query: 1621 HVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 1680
+ + P S ID ++P G++++LV +D F+ WVEA T +
Sbjct: 897 KIGAGVR--VRGHRPGSHWEIDFT-EVKP-GLYGYKYLLVFVDTFSGWVEAFPTKRETAR 952
Query: 1681 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEA 1740
VV+K + I R+G+P + +DNG + V Q++ + I+ YRPQ +G VE
Sbjct: 953 VVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVER 1012
Query: 1741 ANKNIKRIVQKMVTT--YRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1798
N+ IK + K+ RDW +LP AL+ R T G TP+ ++YG L +
Sbjct: 1013 MNRTIKETLTKLTLAAGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-VNFH 1070
Query: 1799 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 1858
P + ++L+ + Q+ L V+ + +A ++Y+ ++ D+ V P F+
Sbjct: 1071 DPDM-----SELTNSPSLQAHLQALQTVQREIWKPLA--EAYRDQL----DQPVIPHPFR 1119
Query: 1859 EGELVLKRRISQQPDPRGKWTPNYEGSYVV 1888
G+ V RR + P ++G Y V
Sbjct: 1120 IGDSVWVRRHQTK-----NLEPRWKGPYTV 1144
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 92.8 bits (229), Expect = 8e-18
Identities = 71/237 (29%), Positives = 114/237 (47%), Gaps = 20/237 (8%)
Query: 1654 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVV 1713
G++++LV ID F+ W+EA T +VV K + I R+G+P + TDNG + V
Sbjct: 926 GYKYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 985
Query: 1714 QALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQK--MVTTYRDWHEMLPYALHGYR 1771
Q + + I+ YRPQ +G VE N+ IK + K + T RDW +LP AL+ R
Sbjct: 986 QTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 1045
Query: 1772 TTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRM 1831
T G TP+ ++YG P V P + +++ + Q+ L LV+ +
Sbjct: 1046 NT-PGPHGLTPYEILYGAP---PPLVNFPDPDM---TRVTNSPSLQAHLQALYLVQHEVW 1098
Query: 1832 DAMARGQSYQARMKTAFDKKVHPREFKEGELVLKRRISQQPDPRGKWTPNYEGSYVV 1888
+A +YQ ++ D+ V P ++ G+ V RR + P ++G Y V
Sbjct: 1099 RPLA--AAYQEQL----DRPVVPHPYRVGDTVWVRRHQTK-----NLEPRWKGPYTV 1144
>POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 282
Score = 92.4 bits (228), Expect = 1e-17
Identities = 70/237 (29%), Positives = 114/237 (47%), Gaps = 20/237 (8%)
Query: 1654 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVV 1713
G++++LV +D F+ W+EA T +VV K + I R+G+P + TDNG + V
Sbjct: 12 GYKYLLVFVDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 71
Query: 1714 QALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQK--MVTTYRDWHEMLPYALHGYR 1771
Q + + I+ YRPQ +G VE N+ IK + K + T RDW +LP AL+ R
Sbjct: 72 QTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 131
Query: 1772 TTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRM 1831
T G TP+ ++YG P V P + +++ + Q+ L LV+ +
Sbjct: 132 NT-PGPHGLTPYEILYGAP---PPLVNFPDPDM---TRVTNSPSLQAHLQALYLVQHEVW 184
Query: 1832 DAMARGQSYQARMKTAFDKKVHPREFKEGELVLKRRISQQPDPRGKWTPNYEGSYVV 1888
+A +YQ ++ D+ V P ++ G+ V RR + P ++G Y V
Sbjct: 185 RPLA--AAYQEQL----DRPVVPHPYRVGDTVWVRRHQTK-----NLEPRWKGPYTV 230
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 90.9 bits (224), Expect = 3e-17
Identities = 88/330 (26%), Positives = 150/330 (44%), Gaps = 29/330 (8%)
Query: 1565 EQLMHDVHDGTFGTHATGHTMSRKLLRAG---YYWLTMEHDCYQHARKCHKC-QIYADKI 1620
+Q + ++ D G+ + LL G YY L + A C C Q+ A K
Sbjct: 485 DQFVFELLDSLHRLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKA 544
Query: 1621 HVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 1680
+ + P S ID ++P G++++LV +D F+ WVEA T +
Sbjct: 545 KIGAGVR--VRGHRPGSHWEIDFT-EVKP-GLYGYKYLLVFVDTFSGWVEAFPTKRETAR 600
Query: 1681 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEA 1740
VV+K + I R+G+P + +DNG + V Q++ + I+ + + YRPQ +G VE
Sbjct: 601 VVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADLLGIDKLHCA-YRPQSSGQVER 659
Query: 1741 ANKNIKRIVQKMVTT--YRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1798
N+ IK + K+ RDW +LP AL+ R T G TP+ ++YG L +
Sbjct: 660 MNRTIKETLTKLTLAAGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-VNFH 717
Query: 1799 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 1858
P + ++L+ + Q+ L V+ + +A ++Y+ ++ D+ V P F+
Sbjct: 718 DPDM-----SELTNSPSLQAHLQALQTVQREIWKPLA--EAYRDQL----DQPVIPHPFR 766
Query: 1859 EGELVLKRRISQQPDPRGKWTPNYEGSYVV 1888
G+ V RR + P ++G Y V
Sbjct: 767 IGDSVWVRRHQTK-----NLEPRWKGPYTV 791
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 85.9 bits (211), Expect = 1e-15
Identities = 77/320 (24%), Positives = 135/320 (42%), Gaps = 44/320 (13%)
Query: 1532 LRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLR 1591
L+ + LLD ++ ++ ++L+ +H+ H G ++ R
Sbjct: 763 LKLIHGCLLLDDRVIVPKSLQKIVLK---------QLHEGHPGI--------VQMKQKAR 805
Query: 1592 AGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWP-----FSMVGIDMIGR 1646
+ +W ++ D R C+ CQ + V P +PWP + + ID G
Sbjct: 806 SFVFWRGLDSDIENMVRHCNNCQENSKMPRVVP------LNPWPVPEAPWKRIHIDFAGP 859
Query: 1647 IEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGT 1706
+ NG ++LV +D TK+ E T V + I +G P II+DNGT
Sbjct: 860 L-----NGC-YLLVVVDAKTKYAEV-KLTRSISAVTTIDLLEEIFSIHGYPETIISDNGT 912
Query: 1707 NLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMVTTYRDWHEMLPYA 1766
L +++ +C+ IEH S+ Y P+ NG E +KR + K+ ++L
Sbjct: 913 QLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFVDTLKRGIAKIKGEGSVNQQILNKF 972
Query: 1767 LHGYRTTVRSS-TGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNL 1825
L YR T S+ G+TP +G + + + +P+ RV+ KL++ Q N+
Sbjct: 973 LISYRNTPHSALNGSTPAECHFGRKIRTTMSLLMPTDRVLKVPKLTQY--------QQNM 1024
Query: 1826 VEEKRMDAMARGQSYQARMK 1845
+ AR +++Q K
Sbjct: 1025 KHHYELRNGARAKAFQVNQK 1044
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 85.9 bits (211), Expect = 1e-15
Identities = 71/281 (25%), Positives = 119/281 (42%), Gaps = 19/281 (6%)
Query: 1515 LLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDG 1574
LL YPPG + K TL + I+ + N ++ D + H++
Sbjct: 777 LLQGHYPPGYPKQYKYTLEE-------NKLIVERPNGIRIVPPKADREKIISTAHNI--A 827
Query: 1575 TFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPW 1634
G AT +S K Y+W + D + R+C +C + P L +
Sbjct: 828 HTGRDATFLKVSSK-----YWWPNLRKDVVKSIRQCKQCLVTNATNLTSPPILRPVKPLK 882
Query: 1635 PFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRY 1694
PF ID IG + P SNG+ +LV +D T +V Y A N++
Sbjct: 883 PFDKFYIDYIGPLPP--SNGYLHVLVVVDSMTGFVWL--YPTKAPSTSATVKALNMLTSI 938
Query: 1695 GVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQK-MV 1753
+P + +D G ++ +E I+ S+PY PQ +G VE N +IKR++ K ++
Sbjct: 939 AIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLI 998
Query: 1754 TTYRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLP 1794
W+++LP + S+ TP L++G+++ P
Sbjct: 999 GRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGVDSNTP 1039
>POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 473
Score = 84.7 bits (208), Expect = 2e-15
Identities = 47/140 (33%), Positives = 73/140 (51%)
Query: 1651 ASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNN 1710
A G++++LV +D F+ WVEA T QVV K + +II R+G+P +I +DNG
Sbjct: 202 AKGGYKYLLVLVDTFSGWVEAYPAKRETSQVVIKHLILDIIPRFGLPVQIGSDNGPAFVA 261
Query: 1711 NVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMVTTYRDWHEMLPYALHGY 1770
V Q LCE + YRPQ +G VE N+ +K+ + K+ R + P +
Sbjct: 262 KVTQQLCEALNVSWKLHCAYRPQSSGQVERMNRTLKKAIAKLEDRDRRGLGLPPPSGFAP 321
Query: 1771 RTTVRSSTGATPFSLVYGME 1790
T G +PF ++YG++
Sbjct: 322 GTVYPGREGLSPFEILYGLK 341
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 83.2 bits (204), Expect = 6e-15
Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 1654 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVV 1713
G++++LV +D F+ WVEA T +VAK I I R+G+P I +DNG + V
Sbjct: 778 GYKYLLVFVDTFSGWVEAYPTRQETAHMVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVS 837
Query: 1714 QALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMV--TTYRDWHEMLPYALHGYR 1771
Q L I YRPQ +G VE N+ IK + K+ T +DW +L AL R
Sbjct: 838 QGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRAR 897
Query: 1772 TTVRSSTGATPFSLVYG 1788
T + G TP+ ++YG
Sbjct: 898 NT-PNRFGLTPYEILYG 913
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 83.2 bits (204), Expect = 6e-15
Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 1654 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVV 1713
G++++LV +D F+ WVEA T +VAK I I R+G+P I +DNG + V
Sbjct: 921 GYKYLLVFVDTFSGWVEAFPTRQETAHIVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVS 980
Query: 1714 QALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMV--TTYRDWHEMLPYALHGYR 1771
Q L I YRPQ +G VE N+ IK + K+ T +DW +L AL R
Sbjct: 981 QGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRAR 1040
Query: 1772 TTVRSSTGATPFSLVYG 1788
T + G TP+ ++YG
Sbjct: 1041 NT-PNRFGLTPYEILYG 1056
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,538,681
Number of Sequences: 164201
Number of extensions: 10211439
Number of successful extensions: 30304
Number of sequences better than 10.0: 159
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 29848
Number of HSP's gapped (non-prelim): 359
length of query: 1920
length of database: 59,974,054
effective HSP length: 125
effective length of query: 1795
effective length of database: 39,448,929
effective search space: 70810827555
effective search space used: 70810827555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)
Medicago: description of AC147714.4