BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147537.6 + phase: 0 
         (80 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

S61B_ARATH (P38389) Protein transport protein SEC61 beta subunit      130  5e-31
S61B_YARLI (Q9HFC7) Protein transport protein SEC61 beta subunit       60  1e-09
S61B_MOUSE (Q9CQS8) Protein transport protein SEC61 beta subunit       58  4e-09
S61B_HUMAN (P60468) Protein transport protein SEC61 beta subunit       58  4e-09
S61B_CANFA (P60467) Protein transport protein SEC61 beta subunit       58  4e-09
S61B_SCHPO (O43002) Prpbable protein transport protein SEC61 bet...    56  1e-08
S61B_KLULA (Q8J2P4) Protein transport protein SEC61 beta subunit       49  3e-06
S6B1_YEAST (P52870) Protein transport protein SEC61 beta 1 subunit     45  3e-05
S6B2_YEAST (P52871) Protein transport protein SEC61 beta 2 subunit     44  7e-05
DSX_DROME (P23023) Doublesex protein                                   34  0.059
SECG_PYRAB (P60462) Preprotein translocase secG subunit (Protein...    32  0.22
SECG_PYRHO (P60463) Preprotein translocase secG subunit (Protein...    31  0.65
JUND_CHICK (P27921) Transcription factor jun-D                         31  0.65
GLT2_DROME (Q6WV19) Polypeptide N-acetylgalactosaminyltransferas...    31  0.65
ROD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnR...    30  1.1
ABL_DROME (P00522) Tyrosine-protein kinase Abl (EC 2.7.1.112) (D...    30  1.1
U136_ARATH (O64847) UPF0136 protein At2g26240                          30  1.5
SECG_METKA (Q8TYT4) Preprotein translocase secG subunit (Protein...    30  1.5
PDX5_PAPHA (Q9GLW9) Peroxiredoxin 5, mitochondrial precursor (Pr...    30  1.5
PDX5_CERAE (Q9GLW7) Peroxiredoxin 5, mitochondrial precursor (Pr...    30  1.5

>S61B_ARATH (P38389) Protein transport protein SEC61 beta subunit
          Length = 82

 Score =  130 bits (328), Expect = 5e-31
 Identities = 67/78 (85%), Positives = 71/78 (90%), Gaps = 4/78 (5%)

Query: 3  LGGGAPQRGSAAATASMRRRK----TAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVM 58
          +G GAPQRGSAAATASMRRRK      GGGASGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2  VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 59 SIGFIAFVAVLHVVGKLY 76
          SIGFIAFVAVLHV+GKLY
Sbjct: 62 SIGFIAFVAVLHVMGKLY 79


>S61B_YARLI (Q9HFC7) Protein transport protein SEC61 beta subunit
          Length = 91

 Score = 59.7 bits (143), Expect = 1e-09
 Identities = 30/61 (49%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 15 ATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGK 74
          A AS R   T   GA GG++ TML+ YTD++ GLK+ P VV+V+S+GFI  V  LH++ K
Sbjct: 26 AKASQRPTSTRSVGA-GGSSSTMLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAK 84

Query: 75 L 75
          +
Sbjct: 85 V 85


>S61B_MOUSE (Q9CQS8) Protein transport protein SEC61 beta subunit
          Length = 95

 Score = 58.2 bits (139), Expect = 4e-09
 Identities = 34/78 (43%), Positives = 47/78 (59%), Gaps = 8/78 (10%)

Query: 5  GGAPQRGSAAATA--SMRRRKTAG------GGASGGAAGTMLQFYTDDAPGLKISPNVVL 56
          G +P +  AA  A  ++R+RK A       G  +    G M +FYT+D+PGLK+ P  VL
Sbjct: 14 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 73

Query: 57 VMSIGFIAFVAVLHVVGK 74
          VMS+ FIA V +LH+ GK
Sbjct: 74 VMSLLFIAAVFMLHIWGK 91


>S61B_HUMAN (P60468) Protein transport protein SEC61 beta subunit
          Length = 95

 Score = 58.2 bits (139), Expect = 4e-09
 Identities = 34/78 (43%), Positives = 47/78 (59%), Gaps = 8/78 (10%)

Query: 5  GGAPQRGSAAATA--SMRRRKTAG------GGASGGAAGTMLQFYTDDAPGLKISPNVVL 56
          G +P +  AA  A  ++R+RK A       G  +    G M +FYT+D+PGLK+ P  VL
Sbjct: 14 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 73

Query: 57 VMSIGFIAFVAVLHVVGK 74
          VMS+ FIA V +LH+ GK
Sbjct: 74 VMSLLFIASVFMLHIWGK 91


>S61B_CANFA (P60467) Protein transport protein SEC61 beta subunit
          Length = 95

 Score = 58.2 bits (139), Expect = 4e-09
 Identities = 34/78 (43%), Positives = 47/78 (59%), Gaps = 8/78 (10%)

Query: 5  GGAPQRGSAAATA--SMRRRKTAG------GGASGGAAGTMLQFYTDDAPGLKISPNVVL 56
          G +P +  AA  A  ++R+RK A       G  +    G M +FYT+D+PGLK+ P  VL
Sbjct: 14 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 73

Query: 57 VMSIGFIAFVAVLHVVGK 74
          VMS+ FIA V +LH+ GK
Sbjct: 74 VMSLLFIASVFMLHIWGK 91


>S61B_SCHPO (O43002) Prpbable protein transport protein SEC61 beta
          subunit
          Length = 102

 Score = 56.2 bits (134), Expect = 1e-08
 Identities = 32/79 (40%), Positives = 46/79 (57%), Gaps = 5/79 (6%)

Query: 2  ALGGGAPQRGSAAATASMRRRKTAG--GGASGGAAG---TMLQFYTDDAPGLKISPNVVL 56
          A GG   Q    AA     +   +G  G  + GA G   T+L+ YTD+A G K+ P VV+
Sbjct: 17 APGGPKSQIRRRAAVEKNTKESNSGPAGARAAGAPGSTPTLLKLYTDEASGFKVDPVVVM 76

Query: 57 VMSIGFIAFVAVLHVVGKL 75
          V+S+GFIA V +LH+V ++
Sbjct: 77 VLSVGFIASVFLLHIVARI 95


>S61B_KLULA (Q8J2P4) Protein transport protein SEC61 beta subunit
          Length = 88

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 20/45 (44%), Positives = 33/45 (72%)

Query: 31 GGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGKL 75
          GG++ ++L+ YTD+A GL++ P VVL +++ F+  V  LHVV K+
Sbjct: 39 GGSSSSILKLYTDEANGLRVDPLVVLFLAVAFVFSVVALHVVAKV 83


>S6B1_YEAST (P52870) Protein transport protein SEC61 beta 1
          subunit
          Length = 82

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 23/67 (34%), Positives = 39/67 (57%), Gaps = 6/67 (8%)

Query: 9  QRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAV 68
          ++GS+   A+   +K      S      +L+ Y+D+A GL++ P VVL +++GFI  V  
Sbjct: 17 KQGSSQKVAASAPKKNTNSNNS------ILKIYSDEATGLRVDPLVVLFLAVGFIFSVVA 70

Query: 69 LHVVGKL 75
          LHV+ K+
Sbjct: 71 LHVISKV 77


>S6B2_YEAST (P52871) Protein transport protein SEC61 beta 2
          subunit
          Length = 88

 Score = 43.9 bits (102), Expect = 7e-05
 Identities = 19/44 (43%), Positives = 31/44 (70%)

Query: 31 GGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGK 74
          GG++ ++L+ YTD+A G ++   VVL +S+GFI  V  LH++ K
Sbjct: 40 GGSSSSILKLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTK 83


>DSX_DROME (P23023) Doublesex protein
          Length = 549

 Score = 34.3 bits (77), Expect = 0.059
 Identities = 15/32 (46%), Positives = 18/32 (55%)

Query: 4   GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
           GGGAP   +AAA  S       GGG  GG++G
Sbjct: 253 GGGAPSSSNAAAATSSNGSSGGGGGGGGGSSG 284


>SECG_PYRAB (P60462) Preprotein translocase secG subunit (Protein
          transport protein SEC61 beta subunit homolog)
          Length = 56

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 12/37 (32%), Positives = 24/37 (64%)

Query: 37 MLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVG 73
          +++F+ +D   +KI+P   + +++  I F  +LHVVG
Sbjct: 15 LMRFFDEDTRAIKITPKGAVALTLILIIFEIILHVVG 51


>SECG_PYRHO (P60463) Preprotein translocase secG subunit (Protein
          transport protein SEC61 beta subunit homolog)
          Length = 56

 Score = 30.8 bits (68), Expect = 0.65
 Identities = 12/37 (32%), Positives = 23/37 (61%)

Query: 37 MLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVG 73
          +++F+ +D   +KI+P   + + +  I F  +LHVVG
Sbjct: 15 LMRFFDEDTRAIKITPKGAIALVLILIIFEILLHVVG 51


>JUND_CHICK (P27921) Transcription factor jun-D
          Length = 323

 Score = 30.8 bits (68), Expect = 0.65
 Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 4   GGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMS 59
           GGG P  G+AAA          GGG  GG  G  L      APGL   P V   +S
Sbjct: 143 GGGGPNGGAAAA---------GGGGGGGGGGGGEL-----PAPGLAPEPPVYANLS 184


>GLT2_DROME (Q6WV19) Polypeptide N-acetylgalactosaminyltransferase
          2 (EC 2.4.1.41) (Protein-UDP
          acetylgalactosaminyltransferase 2)
          (UDP-GalNAc:polypeptide
          N-acetylgalactosaminyltransferase 2) (pp-GaNTase 2)
          Length = 633

 Score = 30.8 bits (68), Expect = 0.65
 Identities = 20/49 (40%), Positives = 26/49 (52%), Gaps = 5/49 (10%)

Query: 12 SAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          SAAA ++ R+   AGGGA  GAA        DD  G     NV+L+ S+
Sbjct: 53 SAAAASTARQWAPAGGGAGPGAAAGAAGSGADDPGG-----NVILIGSV 96


>ROD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0
          (hnRNP D0) (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 16/49 (32%), Positives = 25/49 (50%)

Query: 2  ALGGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKI 50
          A+GG A ++  A   A+      AG G+ GG+A    +  + +A G KI
Sbjct: 18 AVGGSAGEQEGAMVAAAQGAAAAAGSGSGGGSAAGGTEGGSTEAEGAKI 66


>ABL_DROME (P00522) Tyrosine-protein kinase Abl (EC 2.7.1.112)
           (D-ash)
          Length = 1520

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 17/54 (31%), Positives = 26/54 (47%)

Query: 3   LGGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVL 56
           LGGG+  RGS   ++S      +G G  GG +G+ L   +      + +P V L
Sbjct: 51  LGGGSTLRGSRIKSSSSGVASGSGSGGGGGGSGSGLSQRSGGHKDARCNPTVGL 104


>U136_ARATH (O64847) UPF0136 protein At2g26240
          Length = 108

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 29 ASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGKLYLR 78
          A GG+A      YT+  PG     N VL  SIG +   A+  ++G  YLR
Sbjct: 36 AGGGSAALFYYVYTE-LPG-----NPVLASSIGIVGSAALTGMMGSRYLR 79


>SECG_METKA (Q8TYT4) Preprotein translocase secG subunit (Protein
          transport protein SEC61 beta subunit homolog)
          Length = 57

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 33 AAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVV 72
          A   +L F+ ++APG+KI P+ +L         + + H +
Sbjct: 15 ARAGILSFWDEEAPGIKIDPDYILYACFAVAVLLIIAHTM 54


>PDX5_PAPHA (Q9GLW9) Peroxiredoxin 5, mitochondrial precursor
          (Prx-V)
          Length = 215

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 24/49 (48%), Positives = 26/49 (52%), Gaps = 9/49 (18%)

Query: 3  LGGGAPQRGSAAATASMRRRKTAGGGASGG------AAGTMLQFYTDDA 45
          LGG A Q  S AATA+ RRR + GG ASGG      AA  M      DA
Sbjct: 17 LGGAAGQ--SVAATAAARRR-SEGGWASGGVRSFSRAAAAMAPIKVGDA 62


>PDX5_CERAE (Q9GLW7) Peroxiredoxin 5, mitochondrial precursor
          (Prx-V)
          Length = 215

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 24/49 (48%), Positives = 26/49 (52%), Gaps = 9/49 (18%)

Query: 3  LGGGAPQRGSAAATASMRRRKTAGGGASGG------AAGTMLQFYTDDA 45
          LGG A Q  S AATA+ RRR + GG ASGG      AA  M      DA
Sbjct: 17 LGGAARQ--SVAATAAARRR-SEGGWASGGVRSFSRAAAAMAPIKVGDA 62


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.321    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,196,610
Number of Sequences: 164201
Number of extensions: 331553
Number of successful extensions: 2874
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2600
Number of HSP's gapped (non-prelim): 257
length of query: 80
length of database: 59,974,054
effective HSP length: 56
effective length of query: 24
effective length of database: 50,778,798
effective search space: 1218691152
effective search space used: 1218691152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)