BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147537.1 + phase: 0 /pseudo
         (1265 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NU4M_YARLI (Q9B6D6) NADH-ubiquinone oxidoreductase chain 4 (EC 1...    33  4.9

>NU4M_YARLI (Q9B6D6) NADH-ubiquinone oxidoreductase chain 4 (EC
           1.6.5.3)
          Length = 486

 Score = 33.1 bits (74), Expect = 4.9
 Identities = 45/198 (22%), Positives = 90/198 (44%), Gaps = 29/198 (14%)

Query: 611 LLLKNCLVSLLNIPFLNLLDMLVLFSCSL---------MSAQNYNRALACVAFLVMTWNT 661
           L+L   LV LLN   L+ +   +LF  +L           + +  RA   V    ++ + 
Sbjct: 117 LVLAIGLVILLNFWALDYISFYILFEATLPLLFILIHIYGSSDSERASFYVLMFTLSGSL 176

Query: 662 ----KDIVVGIQ-SPTDYASHVMLLFRKTPCSPLFLHFIILLALNHFISLIPQLSCFQVL 716
                 +V+ I  + T++ +H + +        L L  II L L  FI+++ +   F + 
Sbjct: 177 FMLLSIVVISIVLNTTNFINHNLFVLS------LDLQTIIWLGL--FIAIMVKTPLFPIH 228

Query: 717 MRIT-------LMGSIFVHPHLLLLNLFRMLILYLQLVIPPE*VIHPLILMITIVILLLK 769
           + +        L GS+ +   +L L L+ +L L L L+   + +  P+I +I+++ ++L 
Sbjct: 229 VWLPVVHSESPLAGSMILAGLILKLALYAILRLLLPLLCEAQILYTPMIYIISLLTIILT 288

Query: 770 FFMSLLLIEKRVLTPFGS 787
              +L  I+ +V+  + S
Sbjct: 289 SLATLRQIDLKVIIAYSS 306


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.351    0.158    0.516 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,893,584
Number of Sequences: 164201
Number of extensions: 4311816
Number of successful extensions: 15859
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15857
Number of HSP's gapped (non-prelim): 2
length of query: 1265
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1143
effective length of database: 39,941,532
effective search space: 45653171076
effective search space used: 45653171076
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 72 (32.3 bits)