BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147517.11 + phase: 0
(83 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PR39_YEAST (P39682) Pre-mRNA processing protein PRP39 39 0.002
CWF4_SCHPO (P87312) Cell cycle control protein cwf4 39 0.002
SUF_DROME (P25991) Suppressor of forked protein 37 0.012
CRN_DROME (P17886) Crooked neck protein 33 0.17
CRN1_HUMAN (Q9BZJ0) Crooked neck-like protein 1 (Crooked neck ho... 32 0.22
CRN1_RAT (P63155) Crooked neck-like protein 1 (Crooked neck homo... 32 0.38
CRN1_MOUSE (P63154) Crooked neck-like protein 1 (Crooked neck ho... 32 0.38
SYT1_AERPE (Q9YDW0) Probable threonyl-tRNA synthetase 1 (EC 6.1.... 29 1.9
RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5 29 2.5
PRP1_SCHPO (Q12381) Pre-mRNA splicing factor prp1 29 2.5
YLX4_CAEEL (P46500) Hypothetical protein F23F12.4 in chromosome III 28 4.2
PRP6_YEAST (P19735) Pre-mRNA splicing factor PRP6 28 5.5
NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplas... 28 5.5
C6AA_BACTU (Q45757) Pesticidial crystal protein cry6Aa (Insectic... 28 5.5
TPIS_CORGL (P19583) Triosephosphate isomerase (EC 5.3.1.1) (TIM)... 27 9.3
LOLA_WOLSU (Q7MRK6) Outer-membrane lipoprotein carrier protein p... 27 9.3
>PR39_YEAST (P39682) Pre-mRNA processing protein PRP39
Length = 629
Score = 38.9 bits (89), Expect = 0.002
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 10 LKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHYC- 68
L + + L ++PL +G+WK++A E +L K + V +V+ S+++W Y
Sbjct: 71 LALETILWQILRKYPLLFGFWKRFATIEYQLFGLKKSIAVLATSVKWFPTSLELWCDYLN 130
Query: 69 IFAISTYGDPDTVR 82
+ ++ + D +R
Sbjct: 131 VLCVNNPNETDFIR 144
>CWF4_SCHPO (P87312) Cell cycle control protein cwf4
Length = 674
Score = 38.9 bits (89), Expect = 0.002
Identities = 24/89 (26%), Positives = 40/89 (43%), Gaps = 10/89 (11%)
Query: 5 LKNNILKMRRV-YDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVD- 62
+++ +L RR+ Y+ L + P Y W E G + + E YE+A+ V V+
Sbjct: 296 VESTVLDKRRLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEK 355
Query: 63 --------MWLHYCIFAISTYGDPDTVRR 83
+WL+YC+F D D R+
Sbjct: 356 NAWRRYVYIWLNYCLFEEIDVKDVDRARK 384
Score = 28.5 bits (62), Expect = 3.2
Identities = 13/57 (22%), Positives = 26/57 (44%)
Query: 11 KMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHY 67
+ R+ ++ + L G+W +Y E + V+ERA+ + + +WL Y
Sbjct: 54 RKRKEFEDAIRRNRLAMGHWMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKY 110
Score = 27.7 bits (60), Expect = 5.5
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 5 LKN-NILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYER 52
+KN NI R ++D + + P W KY E LG+ +V+ER
Sbjct: 115 MKNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFER 163
>SUF_DROME (P25991) Suppressor of forked protein
Length = 733
Score = 36.6 bits (83), Expect = 0.012
Identities = 17/66 (25%), Positives = 36/66 (53%), Gaps = 1/66 (1%)
Query: 9 ILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHYC 68
I ++R +Y++ + FP YWK Y + E R ++V ++++R + + ++D+W Y
Sbjct: 48 IHEVRSLYESLVNVFPTTARYWKLYIEMEMRSRYYERVEKLFQRCLVKI-LNIDLWKLYL 106
Query: 69 IFAIST 74
+ T
Sbjct: 107 TYVKET 112
>CRN_DROME (P17886) Crooked neck protein
Length = 702
Score = 32.7 bits (73), Expect = 0.17
Identities = 16/49 (32%), Positives = 27/49 (54%), Gaps = 2/49 (4%)
Query: 30 WKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHYCIFAIS-TYGD 77
WK Y D E LG + ++YER ++ T V +W+ + F + ++GD
Sbjct: 513 WKAYIDFEVALGETELARQLYERLLER-TQHVKVWMSFAKFEMGLSHGD 560
Score = 32.3 bits (72), Expect = 0.22
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 11 KMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVD--MWLHYC 68
+ R +Y+ FL P W K+A+ E LG D+ ++E AVQ + +W Y
Sbjct: 458 RCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFELAVQQPRLDMPELLWKAYI 517
Query: 69 IFAISTYGDPDTVRR 83
F ++ G+ + R+
Sbjct: 518 DFEVA-LGETELARQ 531
Score = 32.0 bits (71), Expect = 0.29
Identities = 14/57 (24%), Positives = 28/57 (48%)
Query: 11 KMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHY 67
+ R+ ++ L + + +W KYA E + + ++ERA+ +V +WL Y
Sbjct: 60 RKRKTFEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKY 116
Score = 30.4 bits (67), Expect = 0.84
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 9 ILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYS-------- 60
+ K + Y+ +A P Y W Y G D++ E YERA+ V +
Sbjct: 307 VSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRR 366
Query: 61 -VDMWLHYCIFAISTYGDPDTVRR 83
+ +W++Y ++ D + R+
Sbjct: 367 YIYLWINYALYEELEAEDAERTRQ 390
Score = 28.5 bits (62), Expect = 3.2
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 8 NILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHY 67
N+ R+V++ ++ P W+ Y + E R D+ E+YER V V V W+ +
Sbjct: 159 NVAGARQVFERWMEWQPEEQA-WQTYVNFELRYKEIDRAREIYERFVY-VHPDVKNWIKF 216
Query: 68 CIF 70
F
Sbjct: 217 ARF 219
>CRN1_HUMAN (Q9BZJ0) Crooked neck-like protein 1 (Crooked neck
homolog) (hCrn) (CGI-201) (MSTP021)
Length = 848
Score = 32.3 bits (72), Expect = 0.22
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 11 KMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVD--MWLHYC 68
+ R++Y+ FL P W K+A+ E LG D+ +YE A+ + +W Y
Sbjct: 624 RCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYI 683
Query: 69 IFAI 72
F I
Sbjct: 684 DFEI 687
Score = 31.6 bits (70), Expect = 0.38
Identities = 15/58 (25%), Positives = 27/58 (45%)
Query: 10 LKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHY 67
L+ R+ ++ + + W KYA E L + +YERA+ ++ +WL Y
Sbjct: 225 LRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKY 282
Score = 29.6 bits (65), Expect = 1.4
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 9 ILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGV---------TY 59
+ K R Y+ + P Y W Y A+ V EVYERA+ V
Sbjct: 473 VSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKR 532
Query: 60 SVDMWLHYCIFAISTYGDPDTVRR 83
+ +W++Y ++ DP+ R+
Sbjct: 533 YIYLWINYALYEELEAKDPERTRQ 556
Score = 28.9 bits (63), Expect = 2.5
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 30 WKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHYCIFAIST 74
WK Y D E ++ +Y R +Q T V +W+ + F +S+
Sbjct: 679 WKSYIDFEIEQEETERTRNLYRRLLQR-TQHVKVWISFAQFELSS 722
Score = 27.3 bits (59), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 13 RRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYER 52
R ++D + P +W KY E LG+ +V+ER
Sbjct: 296 RNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFER 335
>CRN1_RAT (P63155) Crooked neck-like protein 1 (Crooked neck
homolog) (Crooked neck protein)
Length = 690
Score = 31.6 bits (70), Expect = 0.38
Identities = 15/58 (25%), Positives = 27/58 (45%)
Query: 10 LKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHY 67
L+ R+ ++ + + W KYA E L + +YERA+ ++ +WL Y
Sbjct: 64 LRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKY 121
Score = 30.8 bits (68), Expect = 0.64
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 9 ILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGV---------TY 59
+ K R Y+ + P Y W Y AD V EVYERA+ V
Sbjct: 312 VSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKR 371
Query: 60 SVDMWLHYCIFAISTYGDPDTVRR 83
+ +W++Y ++ DP+ R+
Sbjct: 372 YIYLWVNYALYEELEAKDPERTRQ 395
Score = 30.8 bits (68), Expect = 0.64
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 11 KMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVD--MWLHYC 68
+ R++Y+ FL P W K+A+ E LG ++ +YE A+ + +W Y
Sbjct: 463 RCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYI 522
Query: 69 IFAI 72
F I
Sbjct: 523 DFEI 526
Score = 27.3 bits (59), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 13 RRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYER 52
R ++D + P +W KY E LG+ +V+ER
Sbjct: 135 RNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFER 174
Score = 27.3 bits (59), Expect = 7.1
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 30 WKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHYCIFAIST 74
WK Y D E ++ +Y + +Q T V +W+ + F +S+
Sbjct: 518 WKSYIDFEIEQEETERTRNLYRQLLQR-TQHVKVWISFAQFELSS 561
>CRN1_MOUSE (P63154) Crooked neck-like protein 1 (Crooked neck
homolog)
Length = 690
Score = 31.6 bits (70), Expect = 0.38
Identities = 15/58 (25%), Positives = 27/58 (45%)
Query: 10 LKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHY 67
L+ R+ ++ + + W KYA E L + +YERA+ ++ +WL Y
Sbjct: 64 LRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKY 121
Score = 30.8 bits (68), Expect = 0.64
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 9 ILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGV---------TY 59
+ K R Y+ + P Y W Y AD V EVYERA+ V
Sbjct: 312 VSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKR 371
Query: 60 SVDMWLHYCIFAISTYGDPDTVRR 83
+ +W++Y ++ DP+ R+
Sbjct: 372 YIYLWVNYALYEELEAKDPERTRQ 395
Score = 30.8 bits (68), Expect = 0.64
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 11 KMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVD--MWLHYC 68
+ R++Y+ FL P W K+A+ E LG ++ +YE A+ + +W Y
Sbjct: 463 RCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYI 522
Query: 69 IFAI 72
F I
Sbjct: 523 DFEI 526
Score = 27.3 bits (59), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 13 RRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYER 52
R ++D + P +W KY E LG+ +V+ER
Sbjct: 135 RNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFER 174
Score = 27.3 bits (59), Expect = 7.1
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 30 WKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHYCIFAIST 74
WK Y D E ++ +Y + +Q T V +W+ + F +S+
Sbjct: 518 WKSYIDFEIEQEETERTRNLYRQLLQR-TQHVKVWISFAQFELSS 561
>SYT1_AERPE (Q9YDW0) Probable threonyl-tRNA synthetase 1 (EC
6.1.1.3) (Threonine--tRNA ligase 1) (ThrRS 1)
Length = 484
Score = 29.3 bits (64), Expect = 1.9
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 8 NILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHY 67
N+ + R+YD EF G + Y H A LGS ++ + VY +G + +
Sbjct: 299 NLPRRFRLYDVVREEF----GIEEVYIIHRALLGSIERFLGVYLEHRRGRMPFTLAPIQF 354
Query: 68 CIFAISTYGDPD 79
+ A+ T G+ D
Sbjct: 355 AVIAVKTGGEVD 366
>RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5
Length = 1729
Score = 28.9 bits (63), Expect = 2.5
Identities = 11/42 (26%), Positives = 21/42 (49%)
Query: 13 RRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAV 54
R +++ +A+ P W Y D E + KV +++ER +
Sbjct: 1638 RSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERII 1679
>PRP1_SCHPO (Q12381) Pre-mRNA splicing factor prp1
Length = 906
Score = 28.9 bits (63), Expect = 2.5
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 3 FLLKNNILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVD 62
F+ + I R V+ L +P W + + E G+ + V + E+AV+ +
Sbjct: 520 FIARKCIDCARAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAVESCPKAEI 579
Query: 63 MWLHY 67
+WL Y
Sbjct: 580 LWLLY 584
>YLX4_CAEEL (P46500) Hypothetical protein F23F12.4 in chromosome III
Length = 345
Score = 28.1 bits (61), Expect = 4.2
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 6 KNNILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVD 62
+N ++M YD +C YWK + EA L D + V+ V++S+D
Sbjct: 104 ENTEVQMEHYYDG-----QICRSYWKMKKETEAILKVLDYLRSVFNVKEVSVSFSID 155
>PRP6_YEAST (P19735) Pre-mRNA splicing factor PRP6
Length = 899
Score = 27.7 bits (60), Expect = 5.5
Identities = 18/63 (28%), Positives = 29/63 (45%), Gaps = 3/63 (4%)
Query: 5 LKNNILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVDMW 64
L++ + RV L E P G WK EA +V+++ E+A Q + S+D+
Sbjct: 316 LESTTVNKYRVVRKALQEIPRDEGLWKLAVSFEA---DKAQVIKMLEKATQFIPQSMDLL 372
Query: 65 LHY 67
Y
Sbjct: 373 TAY 375
>NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplast
precursor
Length = 1385
Score = 27.7 bits (60), Expect = 5.5
Identities = 16/45 (35%), Positives = 23/45 (50%)
Query: 11 KMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQ 55
K R +++ L PL YA EA GS + E+Y+RA+Q
Sbjct: 1037 KARLLFERALDAHPLNTKIINMYARFEAEEGSYREAAELYDRALQ 1081
>C6AA_BACTU (Q45757) Pesticidial crystal protein cry6Aa
(Insecticidal delta-endotoxin CryVIA(a)) (Crystaline
entomocidal protoxin) (Crystal protein) (Fragment)
Length = 475
Score = 27.7 bits (60), Expect = 5.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 31 KKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLH 66
K D +AR G K + YE A + + S+D +LH
Sbjct: 153 KAIKDFKARCGILIKEAKQYEEAAKNIVTSLDQFLH 188
>TPIS_CORGL (P19583) Triosephosphate isomerase (EC 5.3.1.1) (TIM)
(Triose-phosphate isomerase)
Length = 259
Score = 26.9 bits (58), Expect = 9.3
Identities = 14/44 (31%), Positives = 21/44 (46%), Gaps = 5/44 (11%)
Query: 20 LAEFPLCYGYWKKYADHEARLGSADKVV-----EVYERAVQGVT 58
+A PL G WK DH+ +G+ K+ E +E+ VT
Sbjct: 1 MARKPLIAGNWKMNLDHQQAIGTVQKLAFALPKEYFEKVDVAVT 44
>LOLA_WOLSU (Q7MRK6) Outer-membrane lipoprotein carrier protein
precursor
Length = 172
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (49%)
Query: 27 YGYWKKYADHEARLGSADKVVEVYERAVQGVTYS 60
YG WK E + DK V +YE A++ T S
Sbjct: 53 YGLWKYEKPMEKEIYIVDKQVVIYEPALEQATVS 86
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.328 0.142 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,898,402
Number of Sequences: 164201
Number of extensions: 319804
Number of successful extensions: 1222
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 47
length of query: 83
length of database: 59,974,054
effective HSP length: 59
effective length of query: 24
effective length of database: 50,286,195
effective search space: 1206868680
effective search space used: 1206868680
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC147517.11