BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147497.3 - phase: 0
(382 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p... 70 9e-12
GIS2_YEAST (P53849) Zinc-finger protein GIS2 70 9e-12
ZCH3_HUMAN (Q9NUD5) Zinc finger CCHC domain containing protein 3 63 1e-09
CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP) (... 61 5e-09
CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)... 61 5e-09
CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)... 60 7e-09
CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP) 60 1e-08
GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-... 59 2e-08
GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-... 59 2e-08
BYR3_SCHPO (P36627) Cellular nucleic acid binding protein homolog 58 4e-08
YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I 55 3e-07
GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-... 51 6e-06
GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; ... 48 4e-05
GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; ... 48 4e-05
GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; C... 48 4e-05
GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; ... 47 8e-05
GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; ... 47 1e-04
GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; ... 47 1e-04
GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; ... 46 2e-04
GAG_SIVAI (Q02843) Gag polyprotein [Contains: Core protein p17; ... 45 2e-04
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding
protein)
Length = 271
Score = 70.1 bits (170), Expect = 9e-12
Identities = 32/70 (45%), Positives = 37/70 (52%), Gaps = 14/70 (20%)
Query: 257 CYKCGEKGHKSNVC--------GRDDRKCFRCGQKGHSLAECKR------GDIVCYNCNG 302
CYKCG+ GH S C G DRKC++CG+ GH EC GD CY C
Sbjct: 170 CYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGK 229
Query: 303 EGHISSQCPE 312
GHIS +CPE
Sbjct: 230 PGHISRECPE 239
Score = 65.9 bits (159), Expect = 2e-10
Identities = 31/72 (43%), Positives = 34/72 (47%), Gaps = 17/72 (23%)
Query: 257 CYKCGEKGHKSNVC------GRDDRKCFRCGQKGHSLAECKR-----------GDIVCYN 299
CYKCGE GH S C G DR C++CG+ GH EC GD CY
Sbjct: 198 CYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYK 257
Query: 300 CNGEGHISSQCP 311
C GHIS CP
Sbjct: 258 CGEAGHISRDCP 269
Score = 65.5 bits (158), Expect = 2e-10
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 220 KGQQNRPKPYSAPADKGKQKMGDDRRPKRRDAHVEIVCYKCGEKGHKSNVC--------G 271
+G +R P S +G R + + CYKCG+ GH S C G
Sbjct: 105 EGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSG 164
Query: 272 RDDRKCFRCGQKGHSLAECKRG--------DIVCYNCNGEGHISSQCPEPKKTRTGGK 321
DR C++CG GH +C G D CY C GH+S +CP T +G +
Sbjct: 165 AGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDR 222
Score = 61.6 bits (148), Expect = 3e-09
Identities = 28/78 (35%), Positives = 36/78 (45%), Gaps = 14/78 (17%)
Query: 257 CYKCGEKGHKSNVCGRDDRK-------CFRCGQKGHSLAECKRG-------DIVCYNCNG 302
C++CGE+GH S C + R CFRCG+ GH +C CY C
Sbjct: 45 CFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQ 104
Query: 303 EGHISSQCPEPKKTRTGG 320
EGH+S CP + GG
Sbjct: 105 EGHLSRDCPSSQGGSRGG 122
Score = 57.8 bits (138), Expect = 5e-08
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 240 MGDDRRPKRRDAHVEIVCYKCGEKGHKSNVCGRDDRK-------CFRCGQKGHSLAECKR 292
M + KR C CG++GH + C D K CFRCG++GH EC
Sbjct: 1 MSETEDVKRPRTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPN 60
Query: 293 -------GDIVCYNCNGEGHISSQCPEPKK 315
G + C+ C GH+S CP K
Sbjct: 61 EARSGAAGAMTCFRCGEAGHMSRDCPNSAK 90
Score = 53.9 bits (128), Expect = 7e-07
Identities = 30/94 (31%), Positives = 39/94 (40%), Gaps = 30/94 (31%)
Query: 248 RRDAHVEIVCYKCGEKGHKSNVCGRDDR-------KCFRCGQKGHSLAEC---------- 290
R A + C++CGE GH S C + +C++CGQ+GH +C
Sbjct: 63 RSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGG 122
Query: 291 ---KR----------GDIVCYNCNGEGHISSQCP 311
KR GD CY C GHIS CP
Sbjct: 123 YGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCP 156
>GIS2_YEAST (P53849) Zinc-finger protein GIS2
Length = 153
Score = 70.1 bits (170), Expect = 9e-12
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 246 PKRRDAHVEIVCYKCGEKGHKSNVCGRDDR----KCFRCGQKGHSLAECKRGDIVCYNCN 301
PK+ ++ CYKCG H + C ++D KC+ CGQ GH +C+ D +CYNCN
Sbjct: 83 PKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQN-DRLCYNCN 141
Query: 302 GEGHISSQCPE 312
GHIS CP+
Sbjct: 142 ETGHISKDCPK 152
Score = 68.2 bits (165), Expect = 3e-11
Identities = 32/77 (41%), Positives = 42/77 (53%), Gaps = 6/77 (7%)
Query: 250 DAHVEIVCYKCGEKGHKSNVCGR----DDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGH 305
D E +CY C + GH C + ++C+ CG+ GH +EC C+NCN GH
Sbjct: 18 DCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQR--CFNCNQTGH 75
Query: 306 ISSQCPEPKKTRTGGKV 322
IS +CPEPKKT KV
Sbjct: 76 ISRECPEPKKTSRFSKV 92
Score = 42.4 bits (98), Expect = 0.002
Identities = 15/40 (37%), Positives = 24/40 (59%), Gaps = 1/40 (2%)
Query: 275 RKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPK 314
+ C+ CG+ GH +C + +CYNCN GH+ + C P+
Sbjct: 4 KACYVCGKIGHLAEDCD-SERLCYNCNKPGHVQTDCTMPR 42
>ZCH3_HUMAN (Q9NUD5) Zinc finger CCHC domain containing protein 3
Length = 404
Score = 62.8 bits (151), Expect = 1e-09
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 257 CYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPKKT 316
C+KCG + H S C +D +CFRCG++GH C++G IVC C GH +QCP+
Sbjct: 336 CFKCGSRTHMSGSCTQD--RCFRCGEEGHLSPYCRKG-IVCNLCGKRGHAFAQCPKAVHN 392
Query: 317 RTGGKVFALTG 327
++ + G
Sbjct: 393 SVAAQLTGVAG 403
Score = 36.2 bits (82), Expect = 0.14
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 275 RKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQC 310
+ CF+CG + H C + C+ C EGH+S C
Sbjct: 334 KTCFKCGSRTHMSGSCTQDR--CFRCGEEGHLSPYC 367
>CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 60.8 bits (146), Expect = 5e-09
Identities = 29/97 (29%), Positives = 46/97 (46%), Gaps = 14/97 (14%)
Query: 218 RGKGQQNRPKPYSAPADKGKQKMGDDRRPKRRDAHVEIVCYKCGEKGHKSNVCGRDDRKC 277
RG+G ++R G+ DR + + + +CY+CGE GH + C + C
Sbjct: 25 RGRGMRSR----------GRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDAC 74
Query: 278 FRCGQKGHSLAECK----RGDIVCYNCNGEGHISSQC 310
+ CG+ GH +CK + CYNC GH++ C
Sbjct: 75 YNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 58.2 bits (139), Expect = 4e-08
Identities = 29/89 (32%), Positives = 37/89 (40%), Gaps = 28/89 (31%)
Query: 257 CYKCGEKGHKSNVC------GRDDRK----------------------CFRCGQKGHSLA 288
C+KCG GH + C GR R C+RCG+ GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 289 ECKRGDIVCYNCNGEGHISSQCPEPKKTR 317
+C + CYNC GHI+ C EPK+ R
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKRER 94
Score = 58.2 bits (139), Expect = 4e-08
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 242 DDRRPKRRDAHVEIVCYKCGEKGHKSNVCGR-DDRKCFRCGQKGHSLAECKRGDIVCYNC 300
D + PKR E CY CG+ GH + C D++KC+ CG+ GH +C + + CY C
Sbjct: 86 DCKEPKRER---EQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYRC 140
Query: 301 NGEGHISSQC 310
GH++ C
Sbjct: 141 GETGHVAINC 150
Score = 56.6 bits (135), Expect = 1e-07
Identities = 23/55 (41%), Positives = 31/55 (55%), Gaps = 3/55 (5%)
Query: 257 CYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAEC-KRGDIVCYNCNGEGHISSQC 310
CY CGE GH C + KC+RCG+ GH C K ++ CY C GH++ +C
Sbjct: 119 CYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
Score = 53.9 bits (128), Expect = 7e-07
Identities = 26/71 (36%), Positives = 33/71 (45%), Gaps = 5/71 (7%)
Query: 254 EIVCYKCGEKGHKSNVCGRDDRK----CFRCGQKGHSLAECKRGDIV-CYNCNGEGHISS 308
E CY CG GH + C R+ C+ CG+ GH +C D CY+C GHI
Sbjct: 71 EDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQK 130
Query: 309 QCPEPKKTRTG 319
C + K R G
Sbjct: 131 DCTKVKCYRCG 141
Score = 43.9 bits (102), Expect = 7e-04
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 254 EIVCYKCGEKGHKSNVCGR-DDRKCFRCGQKGHSLAEC 290
++ CY+CGE GH + C + + C+RCG+ GH EC
Sbjct: 134 KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
>CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 60.8 bits (146), Expect = 5e-09
Identities = 29/97 (29%), Positives = 46/97 (46%), Gaps = 14/97 (14%)
Query: 218 RGKGQQNRPKPYSAPADKGKQKMGDDRRPKRRDAHVEIVCYKCGEKGHKSNVCGRDDRKC 277
RG+G ++R G+ DR + + + +CY+CGE GH + C + C
Sbjct: 25 RGRGMRSR----------GRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDAC 74
Query: 278 FRCGQKGHSLAECK----RGDIVCYNCNGEGHISSQC 310
+ CG+ GH +CK + CYNC GH++ C
Sbjct: 75 YNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 58.2 bits (139), Expect = 4e-08
Identities = 29/89 (32%), Positives = 37/89 (40%), Gaps = 28/89 (31%)
Query: 257 CYKCGEKGHKSNVC------GRDDRK----------------------CFRCGQKGHSLA 288
C+KCG GH + C GR R C+RCG+ GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 289 ECKRGDIVCYNCNGEGHISSQCPEPKKTR 317
+C + CYNC GHI+ C EPK+ R
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKRER 94
Score = 58.2 bits (139), Expect = 4e-08
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 242 DDRRPKRRDAHVEIVCYKCGEKGHKSNVCGR-DDRKCFRCGQKGHSLAECKRGDIVCYNC 300
D + PKR E CY CG+ GH + C D++KC+ CG+ GH +C + + CY C
Sbjct: 86 DCKEPKRER---EQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYRC 140
Query: 301 NGEGHISSQC 310
GH++ C
Sbjct: 141 GETGHVAINC 150
Score = 56.6 bits (135), Expect = 1e-07
Identities = 23/55 (41%), Positives = 31/55 (55%), Gaps = 3/55 (5%)
Query: 257 CYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAEC-KRGDIVCYNCNGEGHISSQC 310
CY CGE GH C + KC+RCG+ GH C K ++ CY C GH++ +C
Sbjct: 119 CYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
Score = 53.9 bits (128), Expect = 7e-07
Identities = 26/71 (36%), Positives = 33/71 (45%), Gaps = 5/71 (7%)
Query: 254 EIVCYKCGEKGHKSNVCGRDDRK----CFRCGQKGHSLAECKRGDIV-CYNCNGEGHISS 308
E CY CG GH + C R+ C+ CG+ GH +C D CY+C GHI
Sbjct: 71 EDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQK 130
Query: 309 QCPEPKKTRTG 319
C + K R G
Sbjct: 131 DCTKVKCYRCG 141
Score = 43.9 bits (102), Expect = 7e-04
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 254 EIVCYKCGEKGHKSNVCGR-DDRKCFRCGQKGHSLAEC 290
++ CY+CGE GH + C + + C+RCG+ GH EC
Sbjct: 134 KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
>CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 178
Score = 60.5 bits (145), Expect = 7e-09
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 218 RGKGQQNRPKPYSAPADKGKQKMGDDRRPKRRDAHVEIVCYKCGEKGHKSNVCG-RDDRK 276
RG+G ++R G+ DR + + + +CY+CGE GH + C ++D
Sbjct: 25 RGRGMRSR----------GRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDEA 74
Query: 277 CFRCGQKGHSLAECK----RGDIVCYNCNGEGHISSQC 310
C+ CG+ GH +CK + CYNC GH++ C
Sbjct: 75 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 58.2 bits (139), Expect = 4e-08
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 242 DDRRPKRRDAHVEIVCYKCGEKGHKSNVCGR-DDRKCFRCGQKGHSLAECKRGDIVCYNC 300
D + PKR E CY CG+ GH + C D++KC+ CG+ GH +C + + CY C
Sbjct: 87 DCKEPKRER---EQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYRC 141
Query: 301 NGEGHISSQC 310
GH++ C
Sbjct: 142 GETGHVAINC 151
Score = 56.6 bits (135), Expect = 1e-07
Identities = 23/55 (41%), Positives = 31/55 (55%), Gaps = 3/55 (5%)
Query: 257 CYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAEC-KRGDIVCYNCNGEGHISSQC 310
CY CGE GH C + KC+RCG+ GH C K ++ CY C GH++ +C
Sbjct: 120 CYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172
Score = 56.2 bits (134), Expect = 1e-07
Identities = 30/90 (33%), Positives = 38/90 (41%), Gaps = 29/90 (32%)
Query: 257 CYKCGEKGHKSNVC------GRDDRK----------------------CFRCGQKGHSLA 288
C+KCG GH + C GR R C+RCG+ GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 289 ECK-RGDIVCYNCNGEGHISSQCPEPKKTR 317
+C + D CYNC GHI+ C EPK+ R
Sbjct: 66 DCDLQEDEACYNCGRGGHIAKDCKEPKRER 95
Score = 53.9 bits (128), Expect = 7e-07
Identities = 26/75 (34%), Positives = 34/75 (44%), Gaps = 5/75 (6%)
Query: 250 DAHVEIVCYKCGEKGHKSNVCGRDDRK----CFRCGQKGHSLAECKRGDIV-CYNCNGEG 304
D + CY CG GH + C R+ C+ CG+ GH +C D CY+C G
Sbjct: 68 DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 127
Query: 305 HISSQCPEPKKTRTG 319
HI C + K R G
Sbjct: 128 HIQKDCTKVKCYRCG 142
Score = 43.9 bits (102), Expect = 7e-04
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 254 EIVCYKCGEKGHKSNVCGR-DDRKCFRCGQKGHSLAEC 290
++ CY+CGE GH + C + + C+RCG+ GH EC
Sbjct: 135 KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172
>CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP)
Length = 172
Score = 59.7 bits (143), Expect = 1e-08
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 256 VCYKCGEKGHKSNVCG-RDDRKCFRCGQKGHSLAECK----RGDIVCYNCNGEGHISSQC 310
+CY+CGE GH + C ++D+ C+ CG+ GH +CK + CYNC GH++ C
Sbjct: 47 ICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
Score = 58.2 bits (139), Expect = 4e-08
Identities = 30/84 (35%), Positives = 38/84 (44%), Gaps = 23/84 (27%)
Query: 257 CYKCGEKGHKSNVC------GRDDRK----------------CFRCGQKGHSLAECK-RG 293
C+KCG GH + C GR R C+RCG+ GH +C +
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 294 DIVCYNCNGEGHISSQCPEPKKTR 317
D CYNC GHI+ C EPK+ R
Sbjct: 66 DKACYNCGRGGHIAKDCKEPKRER 89
Score = 58.2 bits (139), Expect = 4e-08
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 242 DDRRPKRRDAHVEIVCYKCGEKGHKSNVCGR-DDRKCFRCGQKGHSLAECKRGDIVCYNC 300
D + PKR E CY CG+ GH + C D++KC+ CG+ GH +C + + CY C
Sbjct: 81 DCKEPKRER---EQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYRC 135
Query: 301 NGEGHISSQC 310
GH++ C
Sbjct: 136 GETGHVAINC 145
Score = 56.6 bits (135), Expect = 1e-07
Identities = 23/55 (41%), Positives = 31/55 (55%), Gaps = 3/55 (5%)
Query: 257 CYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAEC-KRGDIVCYNCNGEGHISSQC 310
CY CGE GH C + KC+RCG+ GH C K ++ CY C GH++ +C
Sbjct: 114 CYSCGEFGHIQKDCTKV--KCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166
Score = 53.9 bits (128), Expect = 7e-07
Identities = 26/75 (34%), Positives = 34/75 (44%), Gaps = 5/75 (6%)
Query: 250 DAHVEIVCYKCGEKGHKSNVCGRDDRK----CFRCGQKGHSLAECKRGDIV-CYNCNGEG 304
D + CY CG GH + C R+ C+ CG+ GH +C D CY+C G
Sbjct: 62 DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 121
Query: 305 HISSQCPEPKKTRTG 319
HI C + K R G
Sbjct: 122 HIQKDCTKVKCYRCG 136
Score = 43.9 bits (102), Expect = 7e-04
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 254 EIVCYKCGEKGHKSNVCGR-DDRKCFRCGQKGHSLAEC 290
++ CY+CGE GH + C + + C+RCG+ GH EC
Sbjct: 129 KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-)
(Germline helicase-2)
Length = 974
Score = 59.3 bits (142), Expect = 2e-08
Identities = 33/118 (27%), Positives = 43/118 (35%), Gaps = 37/118 (31%)
Query: 256 VCYKCGEKGHKSNVCGRDDR-------------------------------------KCF 278
VCY C + GH S C + + KCF
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 279 RCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPKKTRTGGKVFALTGTQTPNEDRL 336
C +GH AEC C+NC +GH S++CP P K R G + T P ED +
Sbjct: 457 NCKGEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAKPREGAEGEGPKATYVPVEDNM 514
Score = 57.0 bits (136), Expect = 8e-08
Identities = 29/101 (28%), Positives = 42/101 (40%), Gaps = 42/101 (41%)
Query: 257 CYKCGEKGHKSNVC-----GRDDRKCFRCGQKGHSLAEC--------------------- 290
C+ C + GH+SN C R+ R C+ C Q GH+ +C
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGN 432
Query: 291 ----------------KRGDIVCYNCNGEGHISSQCPEPKK 315
+RG + C+NC GEGH S++CPEP +
Sbjct: 433 DGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPR 473
Score = 50.1 bits (118), Expect = 1e-05
Identities = 24/58 (41%), Positives = 28/58 (47%), Gaps = 5/58 (8%)
Query: 271 GRDDRKCFRCGQKGHSLAEC-----KRGDIVCYNCNGEGHISSQCPEPKKTRTGGKVF 323
G + CF C Q GH +C +R VCYNC GH S CPE +K R G F
Sbjct: 367 GERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGF 424
Score = 50.1 bits (118), Expect = 1e-05
Identities = 24/58 (41%), Positives = 28/58 (47%), Gaps = 5/58 (8%)
Query: 271 GRDDRKCFRCGQKGHSLAEC-----KRGDIVCYNCNGEGHISSQCPEPKKTRTGGKVF 323
G + CF C Q GH +C +R VCYNC GH S CPE +K R G F
Sbjct: 253 GERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGF 310
>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-)
(Germline helicase-1)
Length = 763
Score = 59.3 bits (142), Expect = 2e-08
Identities = 37/130 (28%), Positives = 48/130 (36%), Gaps = 39/130 (30%)
Query: 246 PKRRDAHVEIVCYKCGEKGHKSNVC----------------------------------- 270
P+ R VCY C + GH S C
Sbjct: 174 PEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGF 233
Query: 271 -GRDDR---KCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPKKTRTGGKVFALT 326
G ++R KCF C +GH AEC C+NC +GH S++CP P K R G +
Sbjct: 234 GGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAKPREGVEGEGPK 293
Query: 327 GTQTPNEDRL 336
T P ED +
Sbjct: 294 ATYVPVEDNM 303
Score = 55.5 bits (132), Expect = 2e-07
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 44/103 (42%)
Query: 257 CYKCGEKGHKSNVC-----GRDDRKCFRCGQKGHSLAEC--------------------- 290
C+ C + GH+S+ C R+ R C+ C Q GH+ EC
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFG 219
Query: 291 ------------------KRGDIVCYNCNGEGHISSQCPEPKK 315
+RG + C+NC GEGH S++CPEP +
Sbjct: 220 NNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR 262
Score = 52.4 bits (124), Expect = 2e-06
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 261 GEKGHKSNVCGRDDRKCFRCGQKGHSLAEC-----KRGDIVCYNCNGEGHISSQCPE--- 312
GE GH G + CF C Q GH ++C +R VCYNC GH S +C E
Sbjct: 147 GEGGHGG---GERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Query: 313 PKKTRTGG 320
P++ RTGG
Sbjct: 204 PREGRTGG 211
>BYR3_SCHPO (P36627) Cellular nucleic acid binding protein homolog
Length = 179
Score = 58.2 bits (139), Expect = 4e-08
Identities = 24/69 (34%), Positives = 34/69 (48%), Gaps = 3/69 (4%)
Query: 257 CYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECK--RGDIVCYNCNGEGHISSQCPEPK 314
CY CGE GH++ C + C+ C Q GH +EC + + CY C GH+ CP
Sbjct: 19 CYNCGENGHQARECTKGSI-CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSP 77
Query: 315 KTRTGGKVF 323
R G + +
Sbjct: 78 NPRQGAECY 86
Score = 57.4 bits (137), Expect = 6e-08
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 272 RDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPKKTRT 318
R +C+ CG+ GH EC +G I CYNCN GH +S+C EP++ +T
Sbjct: 14 RPGPRCYNCGENGHQARECTKGSI-CYNCNQTGHKASECTEPQQEKT 59
Score = 54.7 bits (130), Expect = 4e-07
Identities = 24/59 (40%), Positives = 32/59 (53%), Gaps = 3/59 (5%)
Query: 257 CYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDI--VCYNCNGEGHISSQCPEP 313
CY CG GH++ C KC+ CG+ GH EC++ +CY CN GHI+ C P
Sbjct: 118 CYACGSYGHQARDCTMGV-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCTSP 175
Score = 52.0 bits (123), Expect = 3e-06
Identities = 21/62 (33%), Positives = 32/62 (50%), Gaps = 7/62 (11%)
Query: 256 VCYKCGEKGHKSNVC--GRDDRKCFRCGQKGHSLAEC-----KRGDIVCYNCNGEGHISS 308
+CY C + GHK++ C + ++ C+ CG GH + +C R CY C GHI+
Sbjct: 37 ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIAR 96
Query: 309 QC 310
C
Sbjct: 97 DC 98
Score = 47.4 bits (111), Expect = 6e-05
Identities = 25/87 (28%), Positives = 36/87 (40%), Gaps = 18/87 (20%)
Query: 254 EIVCYKCGEKGHKSNVCG-----RDDRKCFRCGQKGHSLAECK-------------RGDI 295
E CY CG GH C R +C++CG+ GH +C+ R ++
Sbjct: 57 EKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNM 116
Query: 296 VCYNCNGEGHISSQCPEPKKTRTGGKV 322
CY C GH + C K + GK+
Sbjct: 117 NCYACGSYGHQARDCTMGVKCYSCGKI 143
Score = 42.7 bits (99), Expect = 0.002
Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 2/44 (4%)
Query: 249 RDAHVEIVCYKCGEKGHKSNVC--GRDDRKCFRCGQKGHSLAEC 290
RD + + CY CG+ GH+S C D + C++C Q GH C
Sbjct: 129 RDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I
Length = 218
Score = 55.1 bits (131), Expect = 3e-07
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 203 YQEDTKAHYKIMSERRGKGQQNRPKPY--SAPADKGKQKMGDDRRPKRRDAHVEI----- 255
+ E T K++ + + N + A G K D+R+ K+R + +
Sbjct: 13 FLEATPYESKVLEQPKNSSNTNEESSSQDNMKASFGSSKRYDERQKKKRSEYRRLRRINQ 72
Query: 256 -----VCYKCGEKGHKSNVC--GRDDRK-CFRCGQKGHSLAEC-KRGDI---VCYNCNGE 303
C+ C ++GH C +D+ CFRCG K HSL C K+G + C+ C+
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 304 GHISSQCPEPKK 315
GH+S QC + K
Sbjct: 133 GHLSGQCEQNPK 144
>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-)
(Germline helicase-4)
Length = 1156
Score = 50.8 bits (120), Expect = 6e-06
Identities = 28/95 (29%), Positives = 41/95 (42%), Gaps = 14/95 (14%)
Query: 229 YSAPADKGKQKMGDDRRPKRRDAHVEIVCYKCGEKGHKSNVCGRDDRK---CFRCGQKGH 285
+ P+D + RP+ C+ CGE+GH S C + C C Q GH
Sbjct: 552 FGEPSDNQRGNWDGGERPRG--------CHNCGEEGHISKECDKPKVPRFPCRNCEQLGH 603
Query: 286 SLAECKRGDIV---CYNCNGEGHISSQCPEPKKTR 317
++C + + C NC EGH + C +PK R
Sbjct: 604 FASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPR 638
Score = 41.2 bits (95), Expect = 0.004
Identities = 24/86 (27%), Positives = 36/86 (40%), Gaps = 9/86 (10%)
Query: 257 CYKCGEKGHKSNVCGRDD---RKCFRCGQKGHSLAECKRGDI------VCYNCNGEGHIS 307
C CG +GH + C + C CGQ+GH +C+ + C C EGH
Sbjct: 618 CRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWG 677
Query: 308 SQCPEPKKTRTGGKVFALTGTQTPNE 333
+CP K G + + TP++
Sbjct: 678 YECPTRPKDLQGNFLESYDFVFTPDD 703
>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 442
Score = 48.1 bits (113), Expect = 4e-05
Identities = 19/55 (34%), Positives = 33/55 (59%), Gaps = 6/55 (10%)
Query: 261 GEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPKK 315
G+ GHK ++KC+ CG+ GH +C++G I+C++C GH+ C + K+
Sbjct: 376 GKAGHKGV-----NQKCYNCGKPGHLARQCRQG-IICHHCGKRGHMQKDCRQKKQ 424
Score = 40.4 bits (93), Expect = 0.008
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 238 QKMGDDRRPKRRDAH--VEIVCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKR 292
Q + RP+ + H V CY CG+ GH + C R C CG++GH +C++
Sbjct: 366 QLLAQALRPQGKAGHKGVNQKCYNCGKPGHLARQC-RQGIICHHCGKRGHMQKDCRQ 421
>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 442
Score = 48.1 bits (113), Expect = 4e-05
Identities = 19/55 (34%), Positives = 33/55 (59%), Gaps = 6/55 (10%)
Query: 261 GEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPKK 315
G+ GHK ++KC+ CG+ GH +C++G I+C++C GH+ C + K+
Sbjct: 376 GKAGHKGV-----NQKCYNCGKPGHLARQCRQG-IICHHCGKRGHMQKDCRQKKQ 424
Score = 40.4 bits (93), Expect = 0.008
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 238 QKMGDDRRPKRRDAH--VEIVCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKR 292
Q + RP+ + H V CY CG+ GH + C R C CG++GH +C++
Sbjct: 366 QLLAQALRPQGKAGHKGVNQKCYNCGKPGHLARQC-RQGIICHHCGKRGHMQKDCRQ 421
>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core
protein p25; Core protein p14]
Length = 442
Score = 48.1 bits (113), Expect = 4e-05
Identities = 19/55 (34%), Positives = 33/55 (59%), Gaps = 6/55 (10%)
Query: 261 GEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPKK 315
G+ GHK ++KC+ CG+ GH +C++G I+C++C GH+ C + K+
Sbjct: 376 GKAGHKGV-----NQKCYNCGKPGHLARQCRQG-IICHHCGKRGHMQKDCRQKKQ 424
Score = 40.4 bits (93), Expect = 0.008
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 238 QKMGDDRRPKRRDAH--VEIVCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKR 292
Q + RP+ + H V CY CG+ GH + C R C CG++GH +C++
Sbjct: 366 QLLAQALRPQGKAGHKGVNQKCYNCGKPGHLARQC-RQGIICHHCGKRGHMQKDCRQ 421
>GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17;
Core protein p24]
Length = 507
Score = 47.0 bits (110), Expect = 8e-05
Identities = 23/80 (28%), Positives = 41/80 (50%), Gaps = 15/80 (18%)
Query: 212 KIMSERRGKGQQNRPKPYSAPADKGKQKMGDDRRPKRRDAHVEIVCYKCGEKGHKSNVCG 271
++M+E P P++A KG++K+ I C+ CG++GH + C
Sbjct: 363 RLMAEALKDALTQGPLPFAAVQQKGQRKI--------------IKCWNCGKEGHSARQCR 408
Query: 272 RDDRK-CFRCGQKGHSLAEC 290
R+ C++CG+ GH +A+C
Sbjct: 409 APRRQGCWKCGKAGHVMAKC 428
Score = 41.2 bits (95), Expect = 0.004
Identities = 15/38 (39%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Query: 276 KCFRCGQKGHSLAECKRGDIV-CYNCNGEGHISSQCPE 312
KC+ CG++GHS +C+ C+ C GH+ ++CPE
Sbjct: 393 KCWNCGKEGHSARQCRAPRRQGCWKCGKAGHVMAKCPE 430
Score = 30.4 bits (67), Expect = 7.8
Identities = 17/61 (27%), Positives = 26/61 (41%), Gaps = 2/61 (3%)
Query: 257 CYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECK--RGDIVCYNCNGEGHISSQCPEPK 314
C G G K+ + + G + + K R I C+NC EGH + QC P+
Sbjct: 352 CQGVGGPGQKARLMAEALKDALTQGPLPFAAVQQKGQRKIIKCWNCGKEGHSARQCRAPR 411
Query: 315 K 315
+
Sbjct: 412 R 412
>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 442
Score = 46.6 bits (109), Expect = 1e-04
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 259 KCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPKK 315
K G+KG ++KC+ CG+ GH +C++G I+C++C GH+ C + K+
Sbjct: 377 KAGQKGV--------NQKCYNCGKPGHLARQCRQG-IICHHCGKRGHMQKDCRQKKQ 424
>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18;
Core protein p25; Core protein p16]
Length = 508
Score = 46.6 bits (109), Expect = 1e-04
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 241 GDDRRPKRRDAHVEIVCYKCGEKGHKSNVCGRDDRK-CFRCGQKGHSLAEC 290
G PKR+ I C+ CG++GH + C RK C+RCGQ+GH + +C
Sbjct: 391 GQGAGPKRK-----IKCFNCGKEGHLARNCKAPRRKGCWRCGQEGHQMKDC 436
Score = 36.2 bits (82), Expect = 0.14
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 276 KCFRCGQKGHSLAECK----RGDIVCYNCNGEGHISSQC 310
KCF CG++GH CK +G C+ C EGH C
Sbjct: 401 KCFNCGKEGHLARNCKAPRRKG---CWRCGQEGHQMKDC 436
Score = 30.8 bits (68), Expect = 6.0
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 282 QKGHSLAECKRGDIVCYNCNGEGHISSQCPEPKK 315
QKG ++ I C+NC EGH++ C P++
Sbjct: 389 QKGQGAGPKRK--IKCFNCGKEGHLARNCKAPRR 420
>GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 441
Score = 45.8 bits (107), Expect = 2e-04
Identities = 14/36 (38%), Positives = 25/36 (68%), Gaps = 1/36 (2%)
Query: 275 RKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQC 310
++C+ CG+ GH +C++G I+C+NC GH+ +C
Sbjct: 379 QRCYNCGKPGHQARQCRQG-IICHNCGKRGHMQKEC 413
Score = 40.0 bits (92), Expect = 0.010
Identities = 15/35 (42%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 257 CYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECK 291
CY CG+ GH++ C R C CG++GH EC+
Sbjct: 381 CYNCGKPGHQARQC-RQGIICHNCGKRGHMQKECR 414
>GAG_SIVAI (Q02843) Gag polyprotein [Contains: Core protein p17;
Core protein p24; Core protein p15]
Length = 513
Score = 45.4 bits (106), Expect = 2e-04
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 246 PKRRDAHVEIVCYKCGEKGHKSNVCGRDDR-KCFRCGQKGHSLAECKRGDIVCYNCNGEG 304
P+++ + C+ CG+ GH C + KCF+CG+ GH +CK G N G G
Sbjct: 381 PQKKGPRGPLKCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQA---NFLGYG 437
Query: 305 H 305
H
Sbjct: 438 H 438
Score = 39.7 bits (91), Expect = 0.013
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 272 RDDRKCFRCGQKGHSLAECKRG-DIVCYNCNGEGHISSQC 310
R KCF CG+ GH ECK I C+ C GH++ C
Sbjct: 387 RGPLKCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDC 426
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,704,875
Number of Sequences: 164201
Number of extensions: 1925398
Number of successful extensions: 5553
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 4943
Number of HSP's gapped (non-prelim): 361
length of query: 382
length of database: 59,974,054
effective HSP length: 112
effective length of query: 270
effective length of database: 41,583,542
effective search space: 11227556340
effective search space used: 11227556340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Medicago: description of AC147497.3