
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147496.3 - phase: 0
(294 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CARC_HUMAN (Q9NPP4) Caspase recruitment domain protein 12 (Ice-p... 34 0.38
YQ56_METAC (Q8TMK1) Hypothetical UPF0228 protein MA2656 34 0.49
RPOB_PLAFA (P21421) DNA-directed RNA polymerase beta chain (EC 2... 33 0.84
CUS1_YEAST (Q02554) CUS1 protein 33 0.84
RF3_SACBA (P05512) Maturase-like RF3 protein 32 1.4
OMPA_BUCAI (P57414) OmpA-like protein precursor 32 1.9
CYAA_SCHPO (P14605) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophos... 32 1.9
YE01_MOUSE (Q91YQ7) Hypothetical protein 0610039K22Rik 31 3.2
PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit... 31 3.2
PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit... 31 3.2
MXIG_SHIFL (Q57332) MxiG protein 31 3.2
CUT7_SCHPO (P24339) Kinesin-like protein cut7 31 3.2
SCA4_RICAK (Q9AIX9) Antigenic heat-stable 120 kDa protein (PS120... 31 4.2
VTTB_BPT7 (P03747) Tail tubular protein B 30 5.4
YD94_METJA (Q58789) Hypothetical protein MJ1394 30 7.1
RPOB_BACHD (Q9Z9M2) DNA-directed RNA polymerase beta chain (EC 2... 30 7.1
RMAR_ASHGO (Q75G41) Mitochondrial ribosomal protein VAR1 30 7.1
CIGB_DICDI (Q94481) Protein cigB (Fragment) 30 7.1
YE01_HUMAN (Q96G75) Hypothetical protein MGC2688/DKFZp727A111/FL... 30 9.3
YD95_YEAST (P38966) Hypothetical 98.7 kDa protein in SLU7-BMH2 i... 30 9.3
>CARC_HUMAN (Q9NPP4) Caspase recruitment domain protein 12
(Ice-protease activating factor) (Ipaf) (CARD, LRR, and
NACHT-containing protein) (Clan protein)
(UNQ6189/PRO20215)
Length = 1024
Score = 34.3 bits (77), Expect = 0.38
Identities = 41/173 (23%), Positives = 70/173 (39%), Gaps = 14/173 (8%)
Query: 2 ENEDKHFLFQPLLPHFNPSSYEINQQN--DYNNSKF-FIPNNNNIIHRILLILFVAIISI 58
E+ K L Q F S IN N DY F +PN + + I L + ++
Sbjct: 564 ESTSKSALSQEFEAFFQGKSLYINSGNIPDYLFDFFEHLPNCASALDFIKLDFYGGAMAS 623
Query: 59 WANYEASKTFDIHIVNDTKDSLAGRRFTLFYVSNDKASRILLNTSSFVEQILYPNGNNDN 118
W A T IH+ + + R +LF+ + + + F + N +
Sbjct: 624 WEK-AAEDTGGIHMEEAPETYIPSRAVSLFFNWKQEFRTLEVTLRDFSKL------NKQD 676
Query: 119 IDIKNKKIIKSVTLRLARQNL----DTITTITADEKNINSYVIEISPMLLEDE 167
I K + +LRL + +++ + + KNI S ++E SP+ +EDE
Sbjct: 677 IRYLGKIFSSATSLRLQIKRCAGVAGSLSLVLSTCKNIYSLMVEASPLTIEDE 729
>YQ56_METAC (Q8TMK1) Hypothetical UPF0228 protein MA2656
Length = 345
Score = 33.9 bits (76), Expect = 0.49
Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 48 LLILFVAIISIW-----ANYEASKTFDIHIVNDTKDSLAGRRFTLFYVSNDKASR----- 97
+ I F+A++ +W A+ + D + DTK G++ F++ ++ +
Sbjct: 13 VFIFFLALVILWGLFANASADMKTPVDTKVPVDTKTPFQGKKVAGFFIEFEEGTTEPEVK 72
Query: 98 -ILLNTSSFVEQILYPNGNNDNIDIKNKKIIKSVTLRLARQNLDTITTITADEKNINSYV 156
IL N + V I Y N+D I + I+ + + +D + +T K ++Y+
Sbjct: 73 DILENYNMTVNTIDY---NSDIIPGRYYMILDRDRIMDIEELVDEVN-LTIPIKKGSNYL 128
Query: 157 IEISPMLLEDENF 169
+ ++ +ED+NF
Sbjct: 129 VTVTEQAIEDKNF 141
>RPOB_PLAFA (P21421) DNA-directed RNA polymerase beta chain (EC
2.7.7.6)
Length = 1024
Score = 33.1 bits (74), Expect = 0.84
Identities = 40/149 (26%), Positives = 68/149 (44%), Gaps = 24/149 (16%)
Query: 30 YNNSKFFIPNNNNIIHRILLILFVAIISIWANYEASKTFDIHIVNDTKDSLAGRRFTLFY 89
YN KF NNI + I L LF+ ++ + N + ++I+ K L ++ FY
Sbjct: 205 YNYIKFIYSKYNNINNIISLKLFIIKLNKFNNIYINL---LNILFSIK--LNFSYYSDFY 259
Query: 90 VSNDKASRILLNTSSFVEQILYPNGNNDNIDIKNK---KIIKSVTLRLARQNLDTITTIT 146
++N + F I DN+ IK+K KI K L + R + IT +
Sbjct: 260 INN-------IYNKKFYSII-------DNLLIKSKKYLKIFKYQLLNINRNIYNNITLLL 305
Query: 147 ADEKNINSYV--IEISPMLLEDENFNNMA 173
++K IN + I I+P++ + NN++
Sbjct: 306 NNKKYINIILENININPLVQYSDQVNNLS 334
>CUS1_YEAST (Q02554) CUS1 protein
Length = 436
Score = 33.1 bits (74), Expect = 0.84
Identities = 18/48 (37%), Positives = 26/48 (53%)
Query: 116 NDNIDIKNKKIIKSVTLRLARQNLDTITTITADEKNINSYVIEISPML 163
N +D K +K K V R Q DT IT DEKN + ++E +P++
Sbjct: 52 NKVVDAKLEKEFKDVLQRFQVQENDTPKEITKDEKNNHVVIVEKNPVM 99
>RF3_SACBA (P05512) Maturase-like RF3 protein
Length = 476
Score = 32.3 bits (72), Expect = 1.4
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 22 YEINQQNDYNNSKFFIPNNNNIIHRILLILFVAIISIWANYEASKT--FDIHIVNDTKDS 79
YE + NN FI +NN I L+L ++ NY +T + ++N
Sbjct: 37 YEYMYKFLMNNMTCFIKWDNNKI----LLLLDMYYNVLYNYHKQRTPMSNKRLMNSKNIM 92
Query: 80 LAGRRFTLFYVSNDKASRILLNTSSFVEQILYPNGNNDNIDIKNKKIIKSV--TLRLARQ 137
+T FY+ N ++ + ++ N NN+NI +K +++K++ L
Sbjct: 93 DYKLLYTYFYILN----KMKMEMDNY-------NNNNNNISLKYNELLKNIMNNLNYKTS 141
Query: 138 NLDTITT---ITADEKNINSYV--IEISPMLLEDENFNNMAIVGAI 178
N++T + D+ IN Y+ +++ M+ + FNN+ G +
Sbjct: 142 NIETNLSNNFYLMDKYLINKYMKYLDMLNMIPNNYMFNNINYKGKL 187
>OMPA_BUCAI (P57414) OmpA-like protein precursor
Length = 349
Score = 32.0 bits (71), Expect = 1.9
Identities = 21/61 (34%), Positives = 30/61 (48%), Gaps = 12/61 (19%)
Query: 16 HFNPSSYEINQQNDYNNSKFFIPNNNNIIHRILLILFVAIISIWANYEASKTFDIHIVND 75
HFNP Y D NNS+ + NN++ I L I+ ++ YE + F + I ND
Sbjct: 38 HFNPLKY------DMNNSQ--VNNNDSSIEN----LSAPIVGLFLGYEFNPYFSLEIEND 85
Query: 76 T 76
T
Sbjct: 86 T 86
>CYAA_SCHPO (P14605) Adenylate cyclase (EC 4.6.1.1) (ATP
pyrophosphate-lyase) (Adenylyl cyclase)
Length = 1692
Score = 32.0 bits (71), Expect = 1.9
Identities = 19/67 (28%), Positives = 37/67 (54%), Gaps = 1/67 (1%)
Query: 87 LFYVSNDKASRILLNTSSFVEQILYPNGNNDNIDIKNKKIIKSVT-LRLARQNLDTITTI 145
LF N+ A+ + +T+ + + LY NGN + KN+ + KS+ L ++ NL +
Sbjct: 859 LFVSGNELANLSISSTAQVLLETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQNLAVE 918
Query: 146 TADEKNI 152
A++K++
Sbjct: 919 KAEKKSL 925
>YE01_MOUSE (Q91YQ7) Hypothetical protein 0610039K22Rik
Length = 393
Score = 31.2 bits (69), Expect = 3.2
Identities = 22/77 (28%), Positives = 38/77 (48%), Gaps = 8/77 (10%)
Query: 130 VTLRLARQNLDTITTITADEKNINSYVIEISPMLLEDENFNNMAIVGAIQRAMARVWLWD 189
V + R+ DT+ + +D K+I+S V + + D NF++ I G + A +WD
Sbjct: 60 VMSQCCRKIRDTVQKLASDHKDIHSSVSRVGKAI--DRNFDS-EICGVVSDA-----VWD 111
Query: 190 GRSKASPRLLDGMVEYI 206
R K L +VE++
Sbjct: 112 SREKQQQILQMAIVEHL 128
>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6
(26S proteasome regulatory subunit S10) (p42A)
Length = 389
Score = 31.2 bits (69), Expect = 3.2
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 84 RFTLFYVSNDKASRILLNTSSFVEQILYPNGNNDNID-IKNKKIIKSVTLRLARQN---- 138
R LFY+ ND +R S +E+ G+ D + +K + + V +R +Q
Sbjct: 146 RIGLFYMDNDLITRNTEKAKSLIEE----GGDWDRRNRLKVYQGLYCVAIRDFKQAAELF 201
Query: 139 LDTITTITA----DEKNINSYVIEISPMLLEDENFNNMAIVGA 177
LDT++T T+ D K +Y + +S + LE + I GA
Sbjct: 202 LDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGA 244
>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6
(26S proteasome regulatory subunit S10) (p42A)
(Proteasome regulatory particle subunit p44S10)
(Phosphonoformate immuno-associated protein 4) (Breast
cancer associated protein SGA-113M)
Length = 389
Score = 31.2 bits (69), Expect = 3.2
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 84 RFTLFYVSNDKASRILLNTSSFVEQILYPNGNNDNID-IKNKKIIKSVTLRLARQN---- 138
R LFY+ ND +R S +E+ G+ D + +K + + V +R +Q
Sbjct: 146 RIGLFYMDNDLITRNTEKAKSLIEE----GGDWDRRNRLKVYQGLYCVAIRDFKQAAELF 201
Query: 139 LDTITTITA----DEKNINSYVIEISPMLLEDENFNNMAIVGA 177
LDT++T T+ D K +Y + +S + LE + I GA
Sbjct: 202 LDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGA 244
>MXIG_SHIFL (Q57332) MxiG protein
Length = 371
Score = 31.2 bits (69), Expect = 3.2
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 12/151 (7%)
Query: 20 SSYEINQQNDYNNSKFFIPNNNNIIHRILLILFVAIISIWANYEASKTFDIHIVNDTKDS 79
S+ EIN+ Y N +F N ++ + L+ A + ++ + E + + D + D
Sbjct: 202 SNKEINRIQQYINQRFPFIN----LYVLNLVSDKAELLVFLSKERNSSKDTEL-----DK 252
Query: 80 LAGRRFTLF-YVSNDKASRILLNTSSFVEQILYPNGNNDNIDI-KNKKIIKSVTLRLARQ 137
L F Y+ N K + + + + + ++ N +I +N K+ SV L +
Sbjct: 253 LKNALIVEFPYIKNIKFNYLSDHNARGDAKGIFTKVNVQYKEICENNKVTYSVREELTDE 312
Query: 138 NLDTITTITADEKNI-NSYVIEISPMLLEDE 167
L+ I + ++ KNI IE S +L++D+
Sbjct: 313 KLELINRLISEHKNIYGDQYIEFSVLLIDDD 343
>CUT7_SCHPO (P24339) Kinesin-like protein cut7
Length = 1085
Score = 31.2 bits (69), Expect = 3.2
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 38 PNNNNIIHRILLI--LFVAIISIWANYEAS-KTFDIHIVNDTKDSLAGRRFTLFYVSNDK 94
P NN ++ R +LI L + I + + A+ K +++ T L R + ++
Sbjct: 425 PQNNQLVFRKVLIKDLVLDIERLKNDLNATRKKNGVYLAESTYKELMDRVQNKDLLCQEQ 484
Query: 95 ASRIL---LNTSSFVEQILYPNGNNDNIDIKNKKIIKSVTLRLARQNLDTITTITADEKN 151
A ++ LN S EQ+ Y + +N ++KK ++++ L+L + + + + +EK
Sbjct: 485 ARKLEVLDLNVKSSREQLQYVSKSNQ----EHKKEVEALQLQLVNSSTELESVKSENEKL 540
Query: 152 INSYVIEI 159
N V+EI
Sbjct: 541 KNELVLEI 548
>SCA4_RICAK (Q9AIX9) Antigenic heat-stable 120 kDa protein (PS120)
(120 kDa antigen) (Protein PS 120) (Fragment)
Length = 998
Score = 30.8 bits (68), Expect = 4.2
Identities = 30/101 (29%), Positives = 46/101 (44%), Gaps = 20/101 (19%)
Query: 125 KIIKSVTLRLARQNLDTITTITADEKNINSYVIEISPMLLEDENFNNMAIVGAIQRAMAR 184
KI+ +L +QNLD IT E+ N + E+ +L + FN +A AIQ
Sbjct: 597 KILSPEQQQLMQQNLDKITA----EQTKNDNITEVQG-ILANPAFNTIAKTAAIQ----- 646
Query: 185 VWLWDGRSKASPRLLDGMVEYIAELAGFHRERLSGGVGESP 225
K + ++LD + AE+ G E ++ V ESP
Sbjct: 647 --------KVTTKVLDSPI--TAEIKGETLESITKIVAESP 677
>VTTB_BPT7 (P03747) Tail tubular protein B
Length = 794
Score = 30.4 bits (67), Expect = 5.4
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 59 WANYEASKTFDIHIVNDT---KDSLAGRRFTLFYVSND-KASRILLNTSSF 105
W NYE S TFDI++ N + K ++AG R SN +A R+ L T +
Sbjct: 707 WVNYENSGTFDIYVENQSSNWKYTMAGARLG----SNTLRAGRLNLGTGQY 753
>YD94_METJA (Q58789) Hypothetical protein MJ1394
Length = 987
Score = 30.0 bits (66), Expect = 7.1
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 37 IPNNNNIIHRILLILFVAIISIWANYEASKTFDIHIVNDTKDSLAGRRFTLFYVSNDKAS 96
+PN N IH I ++ + + + +AS+T I +VN+T D + + +K S
Sbjct: 304 LPNANTYIH-IPILPNNSYVEYEFDIDASQTLPI-LVNETYD--------VTKIPANKMS 353
Query: 97 RILLNTSSFVEQILYPNGNNDNIDI 121
+N ++ + L PNG N N+++
Sbjct: 354 EWTVNLIVYLNKNLVPNGENVNVNV 378
>RPOB_BACHD (Q9Z9M2) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1180
Score = 30.0 bits (66), Expect = 7.1
Identities = 18/53 (33%), Positives = 28/53 (51%), Gaps = 2/53 (3%)
Query: 197 RLLDGMVEYIAELAGFHRERLSGGVGESPE--CEDGRELWWDNKDPTHVARLL 247
R LD ++ Y+ GF R+SGGV E E + + D++D HV R++
Sbjct: 313 RTLDRILPYLENNVGFRTVRMSGGVVEEDEVRLQSVKIYAPDDQDGEHVIRVI 365
>RMAR_ASHGO (Q75G41) Mitochondrial ribosomal protein VAR1
Length = 339
Score = 30.0 bits (66), Expect = 7.1
Identities = 37/191 (19%), Positives = 80/191 (41%), Gaps = 31/191 (16%)
Query: 1 MENEDKHFLFQPLLPHFNPSSYEINQQNDYNNSKFF----IPNN--------NNIIHRIL 48
+ N ++H +++ + N + +N+ N YNN ++ + NN NN++ +++
Sbjct: 30 LNNMNQHNIYKNRYYNKNNNLQYLNKLNTYNNKMYYFNKQLMNNMLIIDNTFNNLLKKMM 89
Query: 49 LILFVAIISIWANYEASKTFDIHIVNDTKDSLAGRRFTLFYVSNDKASRILLNTSSFVEQ 108
+ + + ++ + +T IHI + ++ND+ S++ N +
Sbjct: 90 MSNNILMTNLKFEH---RTNSIHI--------KYYFYNYMNINNDELSKLYNNYMMSINN 138
Query: 109 ILYPNGNNDNIDIKN------KKIIKSVTLRLARQNLDT--ITTITADEKNINSYVIEIS 160
+ NNDN + N K + T +L LDT ++ + N N ++
Sbjct: 139 QMINLLNNDNNSLNNLMTKYYNKKVYINTYKLNYMYLDTELLSQTLTNIYNNNGLSLKSL 198
Query: 161 PMLLEDENFNN 171
M++ FNN
Sbjct: 199 KMIINKLPFNN 209
>CIGB_DICDI (Q94481) Protein cigB (Fragment)
Length = 735
Score = 30.0 bits (66), Expect = 7.1
Identities = 40/150 (26%), Positives = 66/150 (43%), Gaps = 22/150 (14%)
Query: 11 QPLLPHFNPSSYEINQQNDYNNSKFFIPNNNNIIHRILLILFVAIISIWANYEASKTFDI 70
Q LL N + EI QND NN+ + N IH IL + + + + S D
Sbjct: 75 QILLKESNETFKEIQSQNDDNNN--LLKNEFKQIHNIL-----SFVELDIEKQLSTNLDQ 127
Query: 71 HIVNDTKDSLAGRRFTLFYVSNDK--ASRIL-LNTSSFVEQILY---PNGNNDNIDIKNK 124
+I+ +T ++ND S IL N +S ++++ Y N DN D +
Sbjct: 128 NILINT--------IITSSINNDNKIISTILNNNNNSIIDKLNYFTQINNQQDNDDNDDC 179
Query: 125 KIIKSVTLRLARQNLDTITTITADEKNINS 154
I + T+ L +Q +++ I + NIN+
Sbjct: 180 YQIDTDTIELIKQYQNSL-LILKNSNNINN 208
>YE01_HUMAN (Q96G75) Hypothetical protein
MGC2688/DKFZp727A111/FLJ22318
Length = 393
Score = 29.6 bits (65), Expect = 9.3
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 130 VTLRLARQNLDTITTITADEKNINSYVIEISPMLLEDENFNNMAIVGAIQRAMARVWLWD 189
V + R+ DT+ + +D K+I+S V + + D NF++ I G + A +WD
Sbjct: 60 VMSQCCRKIKDTVQKLASDHKDIHSSVSRVGKAI--DRNFDS-EICGVVSDA-----VWD 111
Query: 190 GRSKASPRLLDGMVEYI 206
R + L +VE++
Sbjct: 112 AREQQQQILQMAIVEHL 128
>YD95_YEAST (P38966) Hypothetical 98.7 kDa protein in SLU7-BMH2
intergenic region
Length = 869
Score = 29.6 bits (65), Expect = 9.3
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 34/143 (23%)
Query: 56 ISIWANYEASKTFDIHIVNDT---------------KDSLAGRRFTLFYVSNDKASRILL 100
I + +N + SK D + DT + + G +F L + ++
Sbjct: 242 IPLLSNKKTSKMIDSSLEFDTALIDKAENLGRFLLSSEDIEGLKFMLLNIGFRIIDDSII 301
Query: 101 NTSSFVEQILYPNGNNDNIDIKNKKIIKSV--------TLRLARQNLDTITTITADEKNI 152
+TS ++IL DNI+ K I+S TL L++Q + + ++EK +
Sbjct: 302 STS---KEIL---DTTDNINSAGNKSIRSAKSFNDLQHTLSLSKQKNILPSAVQSNEKYV 355
Query: 153 NSYVIEI-----SPMLLEDENFN 170
+ +++ SP+LL D+N N
Sbjct: 356 SISILDTVGNEGSPLLLTDDNIN 378
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,306,844
Number of Sequences: 164201
Number of extensions: 1474239
Number of successful extensions: 3808
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3801
Number of HSP's gapped (non-prelim): 27
length of query: 294
length of database: 59,974,054
effective HSP length: 109
effective length of query: 185
effective length of database: 42,076,145
effective search space: 7784086825
effective search space used: 7784086825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Medicago: description of AC147496.3