BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147496.2 - phase: 0 /pseudo
(550 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BLVR_BOVIN (Q03368) Bovine leukemia virus cell receptor precurso... 38 0.060
A3D1_HUMAN (O14617) Adapter-related protein complex 3 delta 1 su... 38 0.060
ABRA_PLAFF (P23746) 101 kDa malaria antigen (P101) (Acidic basic... 36 0.30
ZCC6_HUMAN (P61129) Zinc finger CCCH type domain containing prot... 35 0.66
IF2P_HUMAN (O60841) Eukaryotic translation initiation factor 5B ... 35 0.66
ABRA_PLAFC (P22620) 101 kDa malaria antigen (P101) (Acidic basic... 35 0.66
SCP1_HUMAN (Q15431) Synaptonemal complex protein 1 (SCP-1 protein) 34 0.86
RP9_MOUSE (P97762) Retinitis pigmentosa 9 protein homolog (Pim-1... 34 1.1
BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 prot... 34 1.1
MNN4_YEAST (P36044) MNN4 protein 33 1.5
BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic ch... 33 1.5
YO87_CAEEL (P34623) Hypothetical protein ZK1236.7 in chromosome III 33 1.9
ZCC6_MOUSE (Q8BYK8) Zinc finger CCCH type domain containing prot... 33 2.5
YL53_CAEEL (P34433) Hypothetical protein F44E2.3 in chromosome III 33 2.5
RP9_HUMAN (Q8TA86) Retinitis pigmentosa 9 protein (Pim-1 associa... 33 2.5
PA3L_HUMAN (Q8TEW8) Amyotrophic lateral sclerosis 2 chromosome r... 33 2.5
NEB1_RAT (O35867) Neurabin-I (Neural tissue-specific F-actin bin... 33 2.5
CPB2_CAEJA (Q6E3F0) Cytoplasmic polyadenylation element binding ... 33 2.5
CBF5_YEAST (P33322) Centromere/microtubule binding protein CBF5 ... 33 2.5
CBF5_CANAL (O43101) Centromere/microtubule binding protein CBF5 ... 33 2.5
>BLVR_BOVIN (Q03368) Bovine leukemia virus cell receptor precursor
(BLV-R) (BLVPCP1)
Length = 843
Score = 38.1 bits (87), Expect = 0.060
Identities = 22/69 (31%), Positives = 41/69 (58%), Gaps = 5/69 (7%)
Query: 453 KISLAPLSPSEVR-DDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQTAPIFT 511
K+ PLS V+ +++++ +++ EK+KRK K++ERE ++ R + S E AP
Sbjct: 71 KVPGMPLSDQYVKLEEERRHRQRLEKDKRKKKKRERERRGTRRHRSLHTESDEDIAP--- 127
Query: 512 TLQKVALLT 520
Q+V ++T
Sbjct: 128 -AQRVDIVT 135
>A3D1_HUMAN (O14617) Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) (AP-3 complex delta subunit)
(Delta-adaptin)
Length = 1153
Score = 38.1 bits (87), Expect = 0.060
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 453 KISLAPLSPSEVR-DDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQTAP 508
K+ P+S V+ +++++ ++K EK+KR+ KRKE+E K++ + S E AP
Sbjct: 714 KVPGLPMSDQYVKLEEERRHRQKLEKDKRRKKRKEKEKKGKRRHSSLPTESDEDIAP 770
Score = 31.6 bits (70), Expect = 5.6
Identities = 16/48 (33%), Positives = 27/48 (55%), Gaps = 3/48 (6%)
Query: 458 PLSPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQ 505
P+ + + +KK K+ EKE+ K K+KE+E KKK + + H +
Sbjct: 835 PMVEKKSKKPKKKEKKHKEKERDKEKKKEKE---KKKSPKPKKKKHRK 879
Score = 31.6 bits (70), Expect = 5.6
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 468 QKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQT 506
+KK KEK E++K K K KE++ + K KK++ + E+T
Sbjct: 848 EKKHKEK-ERDKEKKKEKEKKKSPKPKKKKHRKEKEERT 885
>ABRA_PLAFF (P23746) 101 kDa malaria antigen (P101) (Acidic basic
repeat antigen) (Fragment)
Length = 321
Score = 35.8 bits (81), Expect = 0.30
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 455 SLAPLSPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQ 505
+LAP + E +++K KEK EKEK + K KE+E K++K + + E+
Sbjct: 269 ALAPKNKEEEEKEKEKEKEKEEKEKEE-KEKEKEEKEKEEKEKEEKEEKEE 318
>ZCC6_HUMAN (P61129) Zinc finger CCCH type domain containing protein
6
Length = 1189
Score = 34.7 bits (78), Expect = 0.66
Identities = 19/71 (26%), Positives = 36/71 (49%), Gaps = 1/71 (1%)
Query: 438 HDGRTNKYSFMHSGQKISLAPLSPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRR 497
H G + + G+ I A ++ ++ ++ K+K EK RK ++K ++ KKK +R
Sbjct: 6 HAGHDREDGELEDGE-IDDAGFEETQDQEAKENEKQKNEKAYRKSRKKHKKEREKKKSKR 64
Query: 498 VSRNSHEQTAP 508
R H+ +P
Sbjct: 65 RKREKHKHNSP 75
>IF2P_HUMAN (O60841) Eukaryotic translation initiation factor 5B
(eIF-5B) (Translation initiation factor IF-2)
Length = 1220
Score = 34.7 bits (78), Expect = 0.66
Identities = 27/96 (28%), Positives = 49/96 (50%), Gaps = 8/96 (8%)
Query: 459 LSPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQTAPIFTTLQKVAL 518
L E + +++R E+ ++E++K K KER+ KK+ + ++++ E A TL+
Sbjct: 369 LEELEAKRKEEERLEQEKRERKKQKEKERKERLKKEGKLLTKSQREARARAEATLK---- 424
Query: 519 LTNTQNFPSCTKFLLQE----CEDVFPKKVPQKFET 550
L Q +K L + ED KK+PQ+ E+
Sbjct: 425 LLQAQGVEVPSKDSLPKKRPIYEDKKRKKIPQQLES 460
>ABRA_PLAFC (P22620) 101 kDa malaria antigen (P101) (Acidic basic
repeat antigen)
Length = 743
Score = 34.7 bits (78), Expect = 0.66
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 455 SLAPLSPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQ 505
+LAP + E +++K KEK EKEK + +++E+E ++K++ E+
Sbjct: 668 ALAPKNKEEEEKEKEKEKEKEEKEKEEKEKEEKEKEKEEKEKEKEEKEEEK 718
Score = 30.8 bits (68), Expect = 9.5
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 463 EVRDDQKKRKEKYEKEKRK-IKRKEREFA*KKKKRRVSRNSHEQ 505
E + +K+ KEK EKEK K K KE+E ++KK + E+
Sbjct: 686 EKEEKEKEEKEKEEKEKEKEEKEKEKEEKEEEKKEKEEEQEEEE 729
Score = 30.8 bits (68), Expect = 9.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 463 EVRDDQKKRKEKYEKEK-RKIKRKEREFA*KKKKRRVSRNSHEQTAP 508
E ++ ++K KE+ EKEK K K KE + KK+K E+ P
Sbjct: 688 EEKEKEEKEKEEKEKEKEEKEKEKEEKEEEKKEKEEEQEEEEEEIVP 734
>SCP1_HUMAN (Q15431) Synaptonemal complex protein 1 (SCP-1 protein)
Length = 976
Score = 34.3 bits (77), Expect = 0.86
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 389 ENVEILVDKQVEVCFKIGKYEDDVLCDVVPMEASHLLLGRP*QFDRSV--------LHDG 440
E +++ D+ V++ +I K + ++V + H Q+D+ + L+
Sbjct: 683 EKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKH-----QYDKIIEERDSELGLYKS 737
Query: 441 RTNKYSFMHSGQKISLAPLSPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSR 500
+ + S + + +I L+ L + ++ E+ EKEK K + KE K+KK + ++
Sbjct: 738 KEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQ 797
Query: 501 NSHEQTAPIFTTLQKVALLTNT--QNFPS 527
+T I+ L A+ + T +NF S
Sbjct: 798 TFLLETPEIYWKLDSKAVPSQTVSRNFTS 826
>RP9_MOUSE (P97762) Retinitis pigmentosa 9 protein homolog (Pim-1
associated protein) (PAP-1)
Length = 213
Score = 33.9 bits (76), Expect = 1.1
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 460 SPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNS 502
S S D++KRK++ +KEK K ++KE++ KK+K + S++S
Sbjct: 166 SSSSSSGDREKRKKRKKKEKHKKRKKEKKKK-KKRKHKASKSS 207
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1
protein)
Length = 1362
Score = 33.9 bits (76), Expect = 1.1
Identities = 19/42 (45%), Positives = 24/42 (56%)
Query: 456 LAPLSPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRR 497
LA LS + +KK K+K EK+K K KRKE KK K +
Sbjct: 525 LAALSQPQQNKPKKKEKDKKEKKKEKHKRKEEVEENKKSKAK 566
Score = 31.2 bits (69), Expect = 7.3
Identities = 15/45 (33%), Positives = 27/45 (59%)
Query: 462 SEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQT 506
S+ + ++ K+KEK +KEK+K K K +E + KK + ++T
Sbjct: 529 SQPQQNKPKKKEKDKKEKKKEKHKRKEEVEENKKSKAKEPPPKKT 573
>MNN4_YEAST (P36044) MNN4 protein
Length = 1178
Score = 33.5 bits (75), Expect = 1.5
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 451 GQKISLAPLSPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQ 505
G+K+ + D++KK+ E+ EK+K++ K K+ E KKK+ + +E+
Sbjct: 1112 GEKMKNEDEENKKNEDEEKKKNEEEEKKKQEEKNKKNEDEEKKKQEEEEKKKNEE 1166
Score = 31.2 bits (69), Expect = 7.3
Identities = 15/49 (30%), Positives = 29/49 (58%)
Query: 457 APLSPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQ 505
A L R ++KK++E+ +K+K + ++K++E KKKK + E+
Sbjct: 1031 AKLLEERKRREKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEE 1079
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic
chromosome-associated protein) (MCAP)
Length = 1400
Score = 33.5 bits (75), Expect = 1.5
Identities = 22/58 (37%), Positives = 30/58 (50%), Gaps = 10/58 (17%)
Query: 456 LAPLSPSEVRDDQKKRKEKYEKEKRKIKRKE----------REFA*KKKKRRVSRNSH 503
LA LS + +KK K+K EK+K K K+KE +E KK K+ S NS+
Sbjct: 526 LAALSQPQQNKPKKKEKDKKEKKKEKHKKKEEVEENKKSKTKELPPKKTKKNNSSNSN 583
Score = 31.2 bits (69), Expect = 7.3
Identities = 15/45 (33%), Positives = 28/45 (61%)
Query: 462 SEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQT 506
S+ + ++ K+KEK +KEK+K K K++E + KK + ++T
Sbjct: 530 SQPQQNKPKKKEKDKKEKKKEKHKKKEEVEENKKSKTKELPPKKT 574
>YO87_CAEEL (P34623) Hypothetical protein ZK1236.7 in chromosome III
Length = 324
Score = 33.1 bits (74), Expect = 1.9
Identities = 14/67 (20%), Positives = 35/67 (51%)
Query: 439 DGRTNKYSFMHSGQKISLAPLSPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRV 498
DG ++ + G+KI + + ++++++ +E +E+ + KR+E E K+ + R
Sbjct: 116 DGGAEQFEYDEDGKKIGKRKAAKLQAKEEKRQMREYEVREREERKRREEEREKKRDEERA 175
Query: 499 SRNSHEQ 505
+ E+
Sbjct: 176 KEEADEK 182
>ZCC6_MOUSE (Q8BYK8) Zinc finger CCCH type domain containing protein
6
Length = 1177
Score = 32.7 bits (73), Expect = 2.5
Identities = 18/71 (25%), Positives = 35/71 (48%), Gaps = 1/71 (1%)
Query: 438 HDGRTNKYSFMHSGQKISLAPLSPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRR 497
H G + + G+ I A ++ ++ ++ K+K EK RK ++K ++ KKK +R
Sbjct: 6 HAGHDREDGELEDGE-IDDAGFEETQDQEAKENEKQKNEKAYRKSRKKHKKEREKKKSKR 64
Query: 498 VSRNSHEQTAP 508
H+ +P
Sbjct: 65 RKHEKHKHNSP 75
>YL53_CAEEL (P34433) Hypothetical protein F44E2.3 in chromosome III
Length = 244
Score = 32.7 bits (73), Expect = 2.5
Identities = 16/49 (32%), Positives = 29/49 (58%), Gaps = 3/49 (6%)
Query: 460 SPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQTAP 508
SP R+++K+R+++ +RK RK+RE +K++ R S + Q P
Sbjct: 11 SPKRDREERKRREDRDRDRERKRDRKDRE---RKRRHRSSSSEGSQAEP 56
>RP9_HUMAN (Q8TA86) Retinitis pigmentosa 9 protein (Pim-1 associated
protein) (PAP-1)
Length = 221
Score = 32.7 bits (73), Expect = 2.5
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 472 KEKYEKEKRKIKRKEREFA*KKKKRRVSRNS 502
KEK++K+K+K K K+R+ KKKK+R ++S
Sbjct: 182 KEKHKKKKKKEKHKKRKKEKKKKKKRKHKSS 212
>PA3L_HUMAN (Q8TEW8) Amyotrophic lateral sclerosis 2 chromosome
region candidate gene protein 19 (Partitioning-defective
3-like protein) (PAR3-L protein) (PAR3-beta)
Length = 1205
Score = 32.7 bits (73), Expect = 2.5
Identities = 25/66 (37%), Positives = 35/66 (52%), Gaps = 6/66 (9%)
Query: 439 DGRTNKYSFMHSGQ---KISLAPLSPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKK 495
DG ++K S HSGQ AP SE+ D + K + K +K K K K+KE+ K+K
Sbjct: 798 DGLSDKSS--HSGQGALNCESAPQGNSELEDMENKAR-KVKKTKEKEKKKEKGKLKVKEK 854
Query: 496 RRVSRN 501
+R N
Sbjct: 855 KRKEEN 860
>NEB1_RAT (O35867) Neurabin-I (Neural tissue-specific F-actin binding
protein I) (Protein phosphatase 1 regulatory subunit 9A)
(p180) (PP1bp175)
Length = 1095
Score = 32.7 bits (73), Expect = 2.5
Identities = 20/61 (32%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 439 DGRTNKYSFMHSGQKISLAPLSPSEVR---DDQKKRKEKYEKEKRKIKRKEREFA*KKKK 495
DG K M S Q +L E++ + +K +EK EK++ K++RKE+E +K K
Sbjct: 1024 DGNKLKALGMTSSQDRALVKKKLKEMKMSLEKARKAQEKMEKQREKLRRKEQEQMQRKSK 1083
Query: 496 R 496
+
Sbjct: 1084 K 1084
>CPB2_CAEJA (Q6E3F0) Cytoplasmic polyadenylation element binding
protein 2
Length = 594
Score = 32.7 bits (73), Expect = 2.5
Identities = 20/61 (32%), Positives = 32/61 (51%), Gaps = 1/61 (1%)
Query: 465 RDDQKKRKEKYEKEKRKIKRKERE-FA*KKKKRRVSRNSHEQTAPIFTTLQKVALLTNTQ 523
R +Q K +EK ++EK ++R+E F+ K K RV + HE + T + + T T
Sbjct: 67 RLEQMKEREKVDEEKEGVERREENGFSGKPWKFRVDSDEHEMKSDDVVTEDRSIMGTKTF 126
Query: 524 N 524
N
Sbjct: 127 N 127
>CBF5_YEAST (P33322) Centromere/microtubule binding protein CBF5
(Centromere-binding factor 5) (Small nucleolar RNP
protein CBF5) (H/ACA snoRNP protein CBF5) (p64')
Length = 483
Score = 32.7 bits (73), Expect = 2.5
Identities = 13/39 (33%), Positives = 28/39 (71%)
Query: 466 DDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHE 504
D +K++KEK +K+++K K+++++ KK+K+ R S +
Sbjct: 432 DSKKEKKEKKDKKEKKEKKEKKDKKEKKEKKEKKRKSED 470
Score = 32.0 bits (71), Expect = 4.3
Identities = 13/41 (31%), Positives = 29/41 (70%)
Query: 465 RDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQ 505
+ ++K++K+K EK+++K K+ ++E KK+K+R S + +
Sbjct: 434 KKEKKEKKDKKEKKEKKEKKDKKEKKEKKEKKRKSEDGDSE 474
>CBF5_CANAL (O43101) Centromere/microtubule binding protein CBF5
(Centromere-binding factor 5) (Small nucleolar RNP
protein CBF5) (H/ACA snoRNP protein CBF5)
Length = 479
Score = 32.7 bits (73), Expect = 2.5
Identities = 13/44 (29%), Positives = 32/44 (72%)
Query: 463 EVRDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQT 506
E + ++K++K+K EK+++K K++++E KK+K+R + + ++
Sbjct: 427 EDKSEKKEKKDKKEKKEKKDKKEKKEKKDKKEKKRKAEDDSSKS 470
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.358 0.160 0.569
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,673,798
Number of Sequences: 164201
Number of extensions: 2057454
Number of successful extensions: 18667
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 17818
Number of HSP's gapped (non-prelim): 373
length of query: 550
length of database: 59,974,054
effective HSP length: 115
effective length of query: 435
effective length of database: 41,090,939
effective search space: 17874558465
effective search space used: 17874558465
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC147496.2