BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147483.13 - phase: 0 
         (208 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RX2_BRARE (O42357) Retinal homeobox protein Rx2                        33  0.36
MTF1_FLAOK (P14871) Modification methylase FokI (EC 2.1.1.72) (A...    33  0.36
Y129_MYCGE (Q49397) Hypothetical protein MG129                         33  0.62
CO3_EPTBU (P98094) Complement C3 [Contains: C3a anaphylatoxin] (...    29  6.8
NU59_YEAST (Q05166) Nucleoporin ASM4 (Nuclear pore protein NUP59)      29  8.9

>RX2_BRARE (O42357) Retinal homeobox protein Rx2
          Length = 327

 Score = 33.5 bits (75), Expect = 0.36
 Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 15/113 (13%)

Query: 36  DLVSLRELALKVKNQTGFRLQYGGLLTILRTNVEEKLVHTLVQFYDPSFRCFTFPDFQVV 95
           D+ S  ELA+KV N    R+Q        +   +EK+    ++ +D   R F  P   + 
Sbjct: 161 DVYSREELAMKV-NLPEVRVQVWFQNRRAKWRRQEKMDTGTMKLHDSPIRSFNRPP--MA 217

Query: 96  PTLEAYSHLL------DSPTAEKTP------FTGPGTSLTPLVVAKDLYLKTS 136
           P +   S+ L       SP +  TP      F GPG SL P   A   +L TS
Sbjct: 218 PNVGPMSNSLPLDPWLSSPLSSATPMHSIPGFMGPGQSLQPTYTAHPGFLNTS 270


>MTF1_FLAOK (P14871) Modification methylase FokI (EC 2.1.1.72)
           (Adenine-specific methyltransferase FokI) (M.FokI)
          Length = 647

 Score = 33.5 bits (75), Expect = 0.36
 Identities = 22/71 (30%), Positives = 33/71 (45%), Gaps = 3/71 (4%)

Query: 103 HLLDSPTAEKTPFTGPGTSLTPLVVAKDLYLKTSDVS---NHLTTKSHIRGFTSKYLLEQ 159
           HLL++      P     T L P V +K LY +  +V    NHL  K++ R     Y  E 
Sbjct: 231 HLLETIALYDYPEIYGKTGLRPYVESKSLYCQKKEVGNAFNHLIEKANFRHILVSYSSEG 290

Query: 160 ATCQDALEAIL 170
              ++ +E+IL
Sbjct: 291 LLLEEEIESIL 301


>Y129_MYCGE (Q49397) Hypothetical protein MG129
          Length = 117

 Score = 32.7 bits (73), Expect = 0.62
 Identities = 23/64 (35%), Positives = 33/64 (50%), Gaps = 5/64 (7%)

Query: 13  GQIKNFVNITGMKKTKSYKFKEVDLVSLREL-ALKV----KNQTGFRLQYGGLLTILRTN 67
           G  +NFVNI          FK+V+ VSL +L AL +    KNQ  FR   G  +  L+  
Sbjct: 53  GGKENFVNIKTTPTQLIVTFKDVNSVSLTKLNALNIKGINKNQNQFRFVLGNFVNELKKK 112

Query: 68  VEEK 71
           +E++
Sbjct: 113 IEDE 116


>CO3_EPTBU (P98094) Complement C3 [Contains: C3a anaphylatoxin]
            (Fragment)
          Length = 1620

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 48   KNQTGFRLQYGGLLTILRTNVEEKLVHTLVQFYDPSFRCFT--FPDFQVVPTLEAYSHL 104
            KN  GFRL       +  +N+   +  T+ ++Y+P FRC     P  +V P    + ++
Sbjct: 1418 KNCVGFRLNQ-----VFESNLVLPVTATVFEYYEPDFRCSKSYHPKMEVNPDASCHGNI 1471


>NU59_YEAST (Q05166) Nucleoporin ASM4 (Nuclear pore protein NUP59)
          Length = 528

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 19/80 (23%), Positives = 40/80 (49%), Gaps = 1/80 (1%)

Query: 91  DFQVVPTLEAYSHLLDSPTAEKTPFTGPGTSLTPLVVAKDLYLKTSDVSNHLTTKSHIRG 150
           +F  +P+L     + D  TA+KT  +   +  TP V  KD Y++ +++  +    ++   
Sbjct: 194 EFGSIPSLTT-QFVTDKYTAKKTNRSAYDSKNTPNVFDKDSYVRIANIEQNHLDNNYNTA 252

Query: 151 FTSKYLLEQATCQDALEAIL 170
            T+  + E ++   +L AI+
Sbjct: 253 ETNNKVHETSSKSSSLSAII 272


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.323    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,071,146
Number of Sequences: 164201
Number of extensions: 977636
Number of successful extensions: 2046
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2045
Number of HSP's gapped (non-prelim): 5
length of query: 208
length of database: 59,974,054
effective HSP length: 105
effective length of query: 103
effective length of database: 42,732,949
effective search space: 4401493747
effective search space used: 4401493747
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)