BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147483.10 - phase: 0
(2245 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 236 5e-61
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 216 7e-55
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 209 9e-53
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 207 2e-52
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 203 4e-51
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 190 4e-47
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 187 2e-46
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 187 2e-46
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 182 7e-45
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 169 1e-40
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 131 2e-29
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 130 4e-29
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 130 5e-29
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 125 1e-27
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 124 2e-27
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 124 2e-27
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 118 2e-25
POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat pr... 114 4e-24
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 110 3e-23
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 108 2e-22
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 236 bits (602), Expect = 5e-61
Identities = 147/472 (31%), Positives = 247/472 (52%), Gaps = 20/472 (4%)
Query: 1163 KQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDM-ALKIK 1221
KQ++ LL++Y DI + + + +H I TK P + ++P +++
Sbjct: 170 KQRLCALLQKYHDIQYHEGDKLTFTNQ--TKHTINTKHNLPLYS---KYSYPQAYEQEVE 224
Query: 1222 SEVQKQIDAGFLMTVEYPEWVANIVPVPKKDG-----KVRMCVDFRDLNKASPKDNFPLP 1276
S++Q ++ G + T P + + I VPKK K R+ +D+R LN+ + D P+P
Sbjct: 225 SQIQDMLNQGIIRTSNSP-YNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIP 283
Query: 1277 HIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGA 1336
++D ++ + F+ +D G++QI+M PE KT+F T G + Y MPFGL NA A
Sbjct: 284 NMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPA 343
Query: 1337 TYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTF 1396
T+QR M + +++K VY+DD+IV ST ++H++ L +FE+L K L+L +KC F
Sbjct: 344 TFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEF 403
Query: 1397 GVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATC 1456
+ LG +++ GI+ +P+K+ AI++ P P K+++ FLG Y +FI +
Sbjct: 404 LKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIA 463
Query: 1457 GPIFKLLRKNQPV-VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCV 1515
P+ K L+KN + N E AF +K + E PIL P + + D ++G V
Sbjct: 464 KPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAV 523
Query: 1516 LGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRM 1575
L Q H + Y+S+ + E Y+ +EK A+ WA K RHYL+ + S
Sbjct: 524 LSQDG------HPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDH 577
Query: 1576 DPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDD 1627
P+ +++ K+ RW++ LSE+D K K K + +AD L+ L++
Sbjct: 578 QPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKG-KENCVADALSRIKLEE 628
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 216 bits (549), Expect = 7e-55
Identities = 131/437 (29%), Positives = 223/437 (50%), Gaps = 17/437 (3%)
Query: 1192 VEHRIPTKPECPPVRQK--LRRTHPDMALKIKSEVQKQIDAGFLMT----VEYPEWVANI 1245
++H + T P ++ L +TH ++++++VQ+ ++ G + P WV
Sbjct: 195 IKHVLNTTHNSPIYSKQYPLAQTHE---IEVENQVQEMLNQGLIRESNSPYNSPTWVVPK 251
Query: 1246 VPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKM 1305
P K R+ +D+R LN+ + D +P+P++D ++ + + F+ +D G++QI+M
Sbjct: 252 KPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEM 311
Query: 1306 SPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKS 1365
E KT+F T G + Y MPFGL NA AT+QR M + +++K VY+DD+I+ S
Sbjct: 312 DEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFS 371
Query: 1366 TDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIRE 1425
T +H+ + +F +L L+L +KC F + LG IV+ GI+ +P KV+AI
Sbjct: 372 TSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVS 431
Query: 1426 MPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPV-VWNDECQEAFDSIKN 1484
P P +K++R FLG Y +FI + P+ L+K + E EAF+ +K
Sbjct: 432 YPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKA 491
Query: 1485 YLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYT 1544
++ PIL P + ++ + ++G VL Q H I ++S+ D E Y+
Sbjct: 492 LIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNG------HPISFISRTLNDHELNYS 545
Query: 1545 MLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIV 1604
+EK A+ WA K RHYL+ + S P++++ K+ RW++ LSEY
Sbjct: 546 AIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFK 605
Query: 1605 FKTQKAIKGSILADHLA 1621
K + S+ AD L+
Sbjct: 606 IDYIKGKENSV-ADALS 621
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 209 bits (531), Expect = 9e-53
Identities = 139/465 (29%), Positives = 232/465 (49%), Gaps = 13/465 (2%)
Query: 1163 KQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKS 1222
K ++ + EY DIFA E P + + ++ K + P + R H + +I++
Sbjct: 276 KSQLENICSEYIDIFA--LESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVE-EIQA 332
Query: 1223 EVQKQIDAGFLMTVEYPEWVANIVPVPKKDG------KVRMCVDFRDLNKASPKDNFPLP 1276
+VQK I ++ ++ + ++ VPKK K R+ +D+R +NK D FPLP
Sbjct: 333 QVQKLIKDK-IVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLP 391
Query: 1277 HIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGA 1336
ID ++D ++K FS +D SG++QI++ R+ TSF T G++ + +PFGL A
Sbjct: 392 RIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPN 451
Query: 1337 TYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTF 1396
++QR MT F + + +Y+DD+IV E+ ++ LT++F + R+Y L+L+P KC+F
Sbjct: 452 SFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSF 511
Query: 1397 GVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATC 1456
+ LG + KGI D K I+ P P R F+ NY RFI +
Sbjct: 512 FMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYS 571
Query: 1457 GPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL 1516
I +L +KN P W DECQ+AF +K+ L+ P +L P + + ++ G VL
Sbjct: 572 RHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVL 631
Query: 1517 GQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMD 1576
Q + + Y S+ FT E+ + E+ A+ WA R Y+ + +
Sbjct: 632 TQNH--NGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHR 689
Query: 1577 PIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1621
P+ Y+F + K+ R ++ L EY+ + K K + +AD L+
Sbjct: 690 PLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKG-KDNHVADALS 733
Score = 122 bits (305), Expect = 1e-26
Identities = 101/381 (26%), Positives = 168/381 (43%), Gaps = 29/381 (7%)
Query: 1873 RNYDMVLLRCV----DEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCY 1928
+N + LL V +E E E ++ +HD TG T + ++ YYW M
Sbjct: 874 KNLKVALLNPVTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIK 933
Query: 1929 QYARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDY 1988
+Y RKC KCQ H + F +D IG + PK+ NG+ + + I
Sbjct: 934 EYVRKCQKCQKAKTTKHTKTPMTITETPEHAFDRVVVDTIGPL-PKSENGNEYAVTLICD 992
Query: 1989 FTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEH 2048
TK++ A N + + VAK I + I +YG ITD GT N+++ LC+ KI++
Sbjct: 993 LTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKN 1052
Query: 2049 HNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYK-DWHEMLPYALHGYRTTVRSSTGATPF 2107
S+ + Q G VE +++ + ++ ++T K DW L Y ++ + TT P+
Sbjct: 1053 ITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPY 1112
Query: 2108 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARG----HS 2163
LV+G + LP KL E + D + + A AR +
Sbjct: 1113 ELVFGRTSNLPKHFN----------KLHSIEPIYNIDDYAKESKYRLEVAYARARKLLEA 1162
Query: 2164 YQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWAPNYEGPYVVKK-AFSGGALI 2222
++ + K +D KV E +VG+ VL R + K Y GPY ++ + +
Sbjct: 1163 HKEKNKENYDLKVKDIELEVGDKVLLRN-----EVGHKLDFKYTGPYKIESIGDNNNITL 1217
Query: 2223 LTHMDGVELPNPVNADIVKKY 2243
LT+ + ++ V+ D +KK+
Sbjct: 1218 LTNKNKKQI---VHKDRLKKF 1235
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 207 bits (528), Expect = 2e-52
Identities = 127/469 (27%), Positives = 237/469 (50%), Gaps = 11/469 (2%)
Query: 1159 EEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMAL 1218
E G +KI ++ ++ D+FA S +++ E I K P+RQK R +
Sbjct: 899 ENGDDRKIWDVIEQFQDVFAISDDELGRNSG--TECVIELKEGAEPIRQKPRPIPLALKP 956
Query: 1219 KIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHI 1278
+I+ +QK ++ + + P W + +V V KKDG +RMC+D+R +NK + PLP+I
Sbjct: 957 EIRKMIQKMLNQKVIRESKSP-WSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNI 1015
Query: 1279 DVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATY 1338
+ + + A K+++ D +G+ QI + + +E T+F F + V+PFGL+ + A +
Sbjct: 1016 EATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALF 1075
Query: 1339 QRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGV 1398
Q M + D++ VYVDD+++ S D EQH++ + + R+RK ++L +KC
Sbjct: 1076 QGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAK 1135
Query: 1399 RSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGP 1458
+ + LG V+ G+E K +++ P K+++ FLG + Y +FI +
Sbjct: 1136 KEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASS 1195
Query: 1459 IFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILV-PPVEG-----RPLIMYLAVFDESM 1512
+ L+ +W E + AF +K + + P+L P VE RP ++Y + +
Sbjct: 1196 LTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGI 1255
Query: 1513 GCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLI 1572
G VL Q+ G ++H I + SK + ETRY + + A+ +A +R + + +
Sbjct: 1256 GAVLAQEGPDG-QQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVF 1314
Query: 1573 SRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1621
+ P+ + + + + ++ RW + + E+D+ A K + +AD L+
Sbjct: 1315 TDHKPLISLLKGSPLADRLWRWSIEILEFDVKI-VYLAGKANAVADALS 1362
Score = 107 bits (267), Expect = 4e-22
Identities = 92/351 (26%), Positives = 149/351 (42%), Gaps = 14/351 (3%)
Query: 1867 GDVLYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHD 1926
G VL + V E L+ ++H+G H M R + R +YW M
Sbjct: 1444 GGVLKNTEIEEQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRK-FYWPQMRVC 1502
Query: 1927 CYQYARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAI 1986
R C KC D + +L +P + D++ + G+R+IL I
Sbjct: 1503 VENCVRTCAKCLCANDHSKLTS-SLTPYRMTFPLEIVACDLMD--VGLSVQGNRYILTII 1559
Query: 1987 DYFTKWVEAASYTNVTKQVVAK-FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFK 2045
D FTK+ A + + V K F++ I +P K++TD G N + K
Sbjct: 1560 DLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLK 1619
Query: 2046 IEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGAT 2105
IEH + Y + NGAVE NK I I++K +W + + YA++ Y V +TG T
Sbjct: 1620 IEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPMEWDDQVVYAVYAYNNCVHENTGET 1679
Query: 2106 PFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQ 2165
P L++G + + PLE+ I A + E + ++ + L + + + AM SY+
Sbjct: 1680 PMFLMHGRDVMGPLEMSGEDAVGINYADMDEYKHLLTQ-ELLKVQKIAKEHAMREQESYK 1738
Query: 2166 ARMKTAFDKKVH----PREFKVGELVLKRRISQQPDPRGKWAPNYEGPYVV 2212
+ + K H P + E+ ++ +Q P KW+ GPY V
Sbjct: 1739 SLFDQKYASKKHRFPQPGSRVLLEIPSEKLGAQCPKLVNKWS----GPYRV 1785
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 203 bits (517), Expect = 4e-51
Identities = 142/493 (28%), Positives = 237/493 (47%), Gaps = 34/493 (6%)
Query: 1154 IGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTH 1213
+ A +G ++ + LL E+P IF P L M VE + + +++
Sbjct: 76 LAAEHPDGTQEILNSLLGEFPRIFE------PPLSGMSVETAVKAEIRTNTQDPIYAKSY 129
Query: 1214 PDMALKIKSEVQKQIDA----GFLMTVEYPE----WVANIVPVPKKDGKVRMCVDFRDLN 1265
P + ++ EV++QID G + P W+ P P + + RM VDF+ LN
Sbjct: 130 P-YPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLN 188
Query: 1266 KASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYK 1325
+ D +P+P I+ + + +K F+ +D SG++QI M D KT+F T G + +
Sbjct: 189 TVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFL 248
Query: 1326 VMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKY 1385
+PFGL NA A +QR + + + I K VY+DD+IV S D + H + L + L K
Sbjct: 249 RLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKA 308
Query: 1386 KLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYI 1445
L++N K F + LG+IV+ GI+ DP KVRAI EMP P + K+++ FLG +Y
Sbjct: 309 NLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYY 368
Query: 1446 SRFISHMTATCGPIFKLLR-----------KNQPVVWNDECQEAFDSIKNYLLEPPILVP 1494
+FI P+ L R P+ ++ ++F+ +K+ L IL
Sbjct: 369 RKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAF 428
Query: 1495 PVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALA 1554
P +P + + ++G VL Q D+ ++ I Y+S+ E Y +EK A+
Sbjct: 429 PCFTKPFHLTTDASNWAIGAVLSQDDQ--GRDRPIAYISRSLNKTEENYATIEKEMLAII 486
Query: 1555 WAAKRLRHYLVN-HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEY--DIVFKTQKAI 1611
W+ LR YL T + + P+ + K+ RW+ + EY ++++K K+
Sbjct: 487 WSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKS- 545
Query: 1612 KGSILADHLAYQP 1624
+++AD L+ P
Sbjct: 546 --NVVADALSRIP 556
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 190 bits (482), Expect = 4e-47
Identities = 116/419 (27%), Positives = 212/419 (49%), Gaps = 21/419 (5%)
Query: 1248 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSP 1307
VPKK+G +RM VD++ LNK + +PLP I+ L+ S +F+ +D S Y+ I++
Sbjct: 455 VPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRK 514
Query: 1308 EDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTD 1367
D K +F P G F Y VMP+G+ A A +Q + T+ + V Y+DD+++ S
Sbjct: 515 GDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKS 574
Query: 1368 EEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP 1427
E +HV+++ + ++L+ L +N KC F K +G+ +S+KG + + + +
Sbjct: 575 ESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWK 634
Query: 1428 APQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLL 1487
P+ K++R FLG +NY+ +FI + P+ LL+K+ W +A ++IK L+
Sbjct: 635 QPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLV 694
Query: 1488 EPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLE 1547
PP+L + +++ D ++G VL Q+ + K + + Y S K + + Y++ +
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHD-DDKYYPVGYYSAKMSKAQLNYSVSD 753
Query: 1548 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI-----------ARWQM 1596
K A+ + K RHYL S ++P K + + + G+I ARWQ+
Sbjct: 754 KEMLAIIKSLKHWRHYLE-------STIEPFKILTDHRNLIGRITNESEPENKRLARWQL 806
Query: 1597 LLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINE 1655
L +++ + + +AD L+ + +D+ +PI D D I ++ + N+
Sbjct: 807 FLQDFNFEINYRPG-SANHIADALS-RIVDETEPIPKDSEDNSINFVNQISITDDFKNQ 863
Score = 99.8 bits (247), Expect = 8e-20
Identities = 82/337 (24%), Positives = 147/337 (43%), Gaps = 35/337 (10%)
Query: 1886 HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIH 1945
HE +L+H G + ++ + W + +Y + CH CQI + H
Sbjct: 920 HEEGKLIHP-----------GIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNH 968
Query: 1946 VPPHALNVIS-SPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYT-NVTK 2003
P L I S P+ +D I + S+G+ + V +D F+K T ++T
Sbjct: 969 KPYGPLQPIPPSERPWESLSMDFITALPE--SSGYNALFVVVDRFSKMAILVPCTKSITA 1026
Query: 2004 QVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVE 2063
+ A+ +I +G P +II DN + + ++ S PYRPQ +G E
Sbjct: 1027 EQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTE 1086
Query: 2064 AANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2122
N+ ++++++ + +T+ + W + + Y + S+T TPF +V+ L +E
Sbjct: 1087 RTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALS-PLE 1145
Query: 2123 IPSLRVIMEAKLSEA-EWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHP-RE 2180
+PS + E + Q+ + LN + +MK FD K+ E
Sbjct: 1146 LPSFSDKTDENSQETIQVFQTVKEHLN--------------TNNIKMKKYFDMKIQEIEE 1191
Query: 2181 FKVGELVL-KRRISQQPDPRGKWAPNYEGP-YVVKKA 2215
F+ G+LV+ KR + K AP++ GP YV++K+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKS 1228
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 187 bits (476), Expect = 2e-46
Identities = 115/419 (27%), Positives = 213/419 (50%), Gaps = 21/419 (5%)
Query: 1248 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSP 1307
VPKK+G +RM VD++ LNK + +PLP I+ L+ S +F+ +D S Y+ I++
Sbjct: 455 VPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRK 514
Query: 1308 EDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTD 1367
D K +F P G F Y VMP+G+ A A +Q + T+ ++ V Y+D++++ S
Sbjct: 515 GDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKS 574
Query: 1368 EEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP 1427
E +HV+++ + ++L+ L +N KC F K +G+ +S+KG + + + +
Sbjct: 575 ESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWK 634
Query: 1428 APQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLL 1487
P+ K++R FLG +NY+ +FI + P+ LL+K+ W +A ++IK L+
Sbjct: 635 QPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLV 694
Query: 1488 EPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLE 1547
PP+L + +++ D ++G VL Q+ + K + + Y S K + + Y++ +
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHD-DDKYYPVGYYSAKMSKAQLNYSVSD 753
Query: 1548 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI-----------ARWQM 1596
K A+ + K RHYL S ++P K + + + G+I ARWQ+
Sbjct: 754 KEMLAIIKSLKHWRHYLE-------STIEPFKILTDHRNLIGRITNESEPENKRLARWQL 806
Query: 1597 LLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINE 1655
L +++ + + +AD L+ + +D+ +PI D D I ++ + N+
Sbjct: 807 FLQDFNFEINYRPG-SANHIADALS-RIVDETEPIPKDSEDNSINFVNQISITDDFKNQ 863
Score = 99.8 bits (247), Expect = 8e-20
Identities = 82/337 (24%), Positives = 147/337 (43%), Gaps = 35/337 (10%)
Query: 1886 HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIH 1945
HE +L+H G + ++ + W + +Y + CH CQI + H
Sbjct: 920 HEEGKLIHP-----------GIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNH 968
Query: 1946 VPPHALNVIS-SPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYT-NVTK 2003
P L I S P+ +D I + S+G+ + V +D F+K T ++T
Sbjct: 969 KPYGPLQPIPPSERPWESLSMDFITALPE--SSGYNALFVVVDRFSKMAILVPCTKSITA 1026
Query: 2004 QVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVE 2063
+ A+ +I +G P +II DN + + ++ S PYRPQ +G E
Sbjct: 1027 EQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTE 1086
Query: 2064 AANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2122
N+ ++++++ + +T+ + W + + Y + S+T TPF +V+ L +E
Sbjct: 1087 RTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALS-PLE 1145
Query: 2123 IPSLRVIMEAKLSEA-EWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHP-RE 2180
+PS + E + Q+ + LN + +MK FD K+ E
Sbjct: 1146 LPSFSDKTDENSQETIQVFQTVKEHLN--------------TNNIKMKKYFDMKIQEIEE 1191
Query: 2181 FKVGELVL-KRRISQQPDPRGKWAPNYEGP-YVVKKA 2215
F+ G+LV+ KR + K AP++ GP YV++K+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKS 1228
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 187 bits (476), Expect = 2e-46
Identities = 115/419 (27%), Positives = 213/419 (50%), Gaps = 21/419 (5%)
Query: 1248 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSP 1307
VPKK+G +RM VD++ LNK + +PLP I+ L+ S +F+ +D S Y+ I++
Sbjct: 455 VPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRK 514
Query: 1308 EDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTD 1367
D K +F P G F Y VMP+G+ A A +Q + T+ ++ V Y+D++++ S
Sbjct: 515 GDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKS 574
Query: 1368 EEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP 1427
E +HV+++ + ++L+ L +N KC F K +G+ +S+KG + + + +
Sbjct: 575 ESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWK 634
Query: 1428 APQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLL 1487
P+ K++R FLG +NY+ +FI + P+ LL+K+ W +A ++IK L+
Sbjct: 635 QPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLV 694
Query: 1488 EPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLE 1547
PP+L + +++ D ++G VL Q+ + K + + Y S K + + Y++ +
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHD-DDKYYPVGYYSAKMSKAQLNYSVSD 753
Query: 1548 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI-----------ARWQM 1596
K A+ + K RHYL S ++P K + + + G+I ARWQ+
Sbjct: 754 KEMLAIIKSLKHWRHYLE-------STIEPFKILTDHRNLIGRITNESEPENKRLARWQL 806
Query: 1597 LLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINE 1655
L +++ + + +AD L+ + +D+ +PI D D I ++ + N+
Sbjct: 807 FLQDFNFEINYRPG-SANHIADALS-RIVDETEPIPKDSEDNSINFVNQISITDDFKNQ 863
Score = 99.8 bits (247), Expect = 8e-20
Identities = 82/337 (24%), Positives = 147/337 (43%), Gaps = 35/337 (10%)
Query: 1886 HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIH 1945
HE +L+H G + ++ + W + +Y + CH CQI + H
Sbjct: 920 HEEGKLIHP-----------GIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNH 968
Query: 1946 VPPHALNVIS-SPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYT-NVTK 2003
P L I S P+ +D I + S+G+ + V +D F+K T ++T
Sbjct: 969 KPYGPLQPIPPSERPWESLSMDFITALPE--SSGYNALFVVVDRFSKMAILVPCTKSITA 1026
Query: 2004 QVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVE 2063
+ A+ +I +G P +II DN + + ++ S PYRPQ +G E
Sbjct: 1027 EQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTE 1086
Query: 2064 AANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2122
N+ ++++++ + +T+ + W + + Y + S+T TPF +V+ L +E
Sbjct: 1087 RTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALS-PLE 1145
Query: 2123 IPSLRVIMEAKLSEA-EWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHP-RE 2180
+PS + E + Q+ + LN + +MK FD K+ E
Sbjct: 1146 LPSFSDKTDENSQETIQVFQTVKEHLN--------------TNNIKMKKYFDMKIQEIEE 1191
Query: 2181 FKVGELVL-KRRISQQPDPRGKWAPNYEGP-YVVKKA 2215
F+ G+LV+ KR + K AP++ GP YV++K+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKS 1228
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 182 bits (463), Expect = 7e-45
Identities = 122/388 (31%), Positives = 197/388 (50%), Gaps = 22/388 (5%)
Query: 1256 RMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSF 1315
R+ +DFR LN+ + D +P+P I +++ N ++K F+ +D SGY+QI ++ DREKTSF
Sbjct: 238 RLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSF 297
Query: 1316 ITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYL 1375
G + + +PFGL NA + +QR + + + I K VYVDD+I+ S +E HV ++
Sbjct: 298 SVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHI 357
Query: 1376 TKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQV 1435
+ + L +R++ K F S + LGFIVS+ G + DP+KV+AI+E P P +V
Sbjct: 358 DTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKV 417
Query: 1436 RGFLGRLNYISRFISHMTATCGPIFKLLR-----------KNQPVVWNDECQEAFDSIKN 1484
R FLG +Y FI A PI +L+ K PV +N+ + AF ++N
Sbjct: 418 RSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRN 477
Query: 1485 YLL-EPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 1543
L E IL P +P + +G VL Q+ I +S+ E Y
Sbjct: 478 ILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEG------RPITMISRTLKQPEQNY 531
Query: 1544 TMLEKTCCALAWAAKRLRHYLV-NHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1602
E+ A+ WA +L+++L + + + P+ + KI RW+ + +++
Sbjct: 532 ATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHN 591
Query: 1603 I-VFKTQKAIKGSILADHLAYQPLDDYQ 1629
VF K K + +AD L+ Q L+ Q
Sbjct: 592 AKVF--YKPGKENFVADALSRQNLNALQ 617
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 169 bits (427), Expect = 1e-40
Identities = 204/888 (22%), Positives = 359/888 (39%), Gaps = 75/888 (8%)
Query: 1245 IVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIK 1304
+ PVPK DG+ RM +D+R++NK P H ++ + K + +D +G+
Sbjct: 5 VYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKYKTTLDLANGFWAHP 64
Query: 1305 MSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVK 1364
++PE T+F +C+ +P G +N+ A + + L ++ V+VYVDD+ +
Sbjct: 65 ITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEI--PNVQVYVDDIYLS 122
Query: 1365 STDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIR 1424
D ++HV+ L K+F+ L + ++ K G ++ + LGF ++++G + +
Sbjct: 123 HDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLL 182
Query: 1425 EMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLL--RKNQPVVWNDECQEAFDSI 1482
+ P+ KQ++ LG LN+ FI + P++ L+ K + + W++E + + +
Sbjct: 183 NITPPKDLKQLQSILGLLNFARNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLNMV 242
Query: 1483 KNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETR 1542
L L + + L++ + S G V +ETGKK I YL+ F+ E +
Sbjct: 243 IEALNTASNLEERLPEQRLVIKVNT-SPSAGYV-RYYNETGKK--PIMYLNYVFSKAELK 298
Query: 1543 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIF-----EKAAVTGKIARWQML 1597
++MLEK + A + + + S + + I E+ A+ + W
Sbjct: 299 FSMLEKLLTTMHKALIKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKALPIRWITWMTY 358
Query: 1598 LSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGP 1657
L + I F K + H+ P++ E + Y + P
Sbjct: 359 LEDPRIQFHYDKTLPE---LKHIPDVYTSSQSPVKHPSQYEGVFYTDGSAI------KSP 409
Query: 1658 DPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEA 1717
DP N G GI P+ + + L T MAE A F ++A
Sbjct: 410 DPTKS---------NNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKA 460
Query: 1718 IDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQ 1777
+ + L + DS V E +PY + K L HI + ++
Sbjct: 461 LKIPGPVL-VITDSFYVAESANKE--------LPY--WKSNGFVNNKKKPLKHISKWKS- 508
Query: 1778 MADALATLSSMFRVNHWNDVPL-IKVQRLERPSHVFAIGDVIDQAGENVVDC---KPWYY 1833
+A+ L ++ + H + L I V L+ A+ D + G VV+C KP
Sbjct: 509 IAECL-SMKPDITIQHEKGISLQIPVFILKGN----ALADKLATQGSYVVNCNTKKPNLD 563
Query: 1834 DIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEAEQLMH 1893
LL Y G KQ + FL DG V R + ++ + + ++++
Sbjct: 564 AELDQLLQGHYIKGYPKQ--------YTYFLEDGKVKVSRPEGVKII--PPQSDRQKIVL 613
Query: 1894 DVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNV 1953
H+ TG + + Y+W M D + +C +C I L
Sbjct: 614 QAHN----LAHTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNKASGPILRP 669
Query: 1954 ISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFT--KWVEAASYTNVTKQVVAKFIK 2011
PF + ID IG + P S G+ ++LV +D T W+ Y A
Sbjct: 670 DRPQKPFDKFFIDYIGPLPP--SQGYLYVLVVVDGMTGFTWL----YPTKAPSTSATVKS 723
Query: 2012 NNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKR 2071
N++ +P I +D G ++ +E I S+PY PQ VE N +IKR
Sbjct: 724 LNVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKR 783
Query: 2072 IVQK-MVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLP 2118
++ K +V W+++LP T TP L++G+++ P
Sbjct: 784 LLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTP 831
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 131 bits (330), Expect = 2e-29
Identities = 130/512 (25%), Positives = 219/512 (42%), Gaps = 52/512 (10%)
Query: 1124 LEQEKKAIQSHQEEIELINIGTEENKREIKIGATLEEG---------VKQKIIQLLREYP 1174
LE KK +S ++ E +NI T + + +K A L EG + Q+ +Q + E
Sbjct: 159 LESMKK--RSKTQQPEPVNISTNKIENPLKEIAILSEGRRLSEEKLFITQQRMQKIEEL- 215
Query: 1175 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIK---------SEVQ 1225
L+ + E+ + ++ ++ + P A+K+K E
Sbjct: 216 ------------LEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFD 263
Query: 1226 KQIDAGFLMTVEYPEWVANIVPV-------PKKDGKVRMCVDFRDLNKASPKDNFPLPHI 1278
KQI + V P ++ P K+ GK RM V+++ +NKA+ D + LP+
Sbjct: 264 KQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNK 323
Query: 1279 DVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATY 1338
D L+ K+FS D SG+ Q+ + E R T+F P G + + V+PFGL A + +
Sbjct: 324 DELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIF 383
Query: 1339 QRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGV 1398
QR M F + K VYVDD++V S +EE H+ ++ + ++ ++ + L+ K
Sbjct: 384 QRHMDEAFR-VFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFK 442
Query: 1399 RSGKLLGFIVSQKGIEVDPDKVRAIREMP-APQTEKQVRGFLGRLNYISRFISHMTATCG 1457
+ LG + + + + I + P + +KQ++ FLG L Y S +I +
Sbjct: 443 KKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRK 502
Query: 1458 PIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG 1517
P+ L++N P W E +K L P L P+ LI+ D+ G +L
Sbjct: 503 PLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLK 562
Query: 1518 --QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRM 1575
+ +E E Y S F E Y +K A+ K+ YL + R
Sbjct: 563 AIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLT--PVHFLIRT 620
Query: 1576 DP------IKYIFEKAAVTGKIARWQMLLSEY 1601
D + ++ + G+ RWQ LS Y
Sbjct: 621 DNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 652
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 130 bits (327), Expect = 4e-29
Identities = 130/516 (25%), Positives = 220/516 (42%), Gaps = 52/516 (10%)
Query: 1120 ITRLLEQEKKAIQSHQEEIELINIGTEENKREIKIGATLEEG---------VKQKIIQLL 1170
I LE KK +S ++ E +NI T + + ++ A L EG + Q+ +Q +
Sbjct: 155 IEGFLESMKK--RSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKI 212
Query: 1171 REYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIK--------- 1221
E L+ + E+ + ++ ++ + P A+K+K
Sbjct: 213 EEL-------------LEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDR 259
Query: 1222 SEVQKQIDAGFLMTVEYPEWVANIVPV-------PKKDGKVRMCVDFRDLNKASPKDNFP 1274
E KQI + V P ++ P K+ GK RM V+++ +NKA+ D +
Sbjct: 260 EEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYN 319
Query: 1275 LPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINA 1334
LP+ D L+ K+FS D SG+ Q+ + E R T+F P G + + V+PFGL A
Sbjct: 320 LPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQA 379
Query: 1335 GATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKC 1394
+ +QR M F + K VYVDD++V S +EE H+ ++ + ++ ++ + L+ K
Sbjct: 380 PSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKA 438
Query: 1395 TFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP-APQTEKQVRGFLGRLNYISRFISHMT 1453
+ LG + + + + I + P + +KQ++ FLG L Y S +I +
Sbjct: 439 QLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLA 498
Query: 1454 ATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMG 1513
P+ L++N P W E +K L P L P+ LI+ D+ G
Sbjct: 499 QIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWG 558
Query: 1514 CVLG--QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWL 1571
+L + +E E Y S F E Y +K A+ K+ YL
Sbjct: 559 GMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLT--PVHF 616
Query: 1572 ISRMDP------IKYIFEKAAVTGKIARWQMLLSEY 1601
+ R D + ++ + G+ RWQ LS Y
Sbjct: 617 LIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 652
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 130 bits (326), Expect = 5e-29
Identities = 129/512 (25%), Positives = 219/512 (42%), Gaps = 52/512 (10%)
Query: 1124 LEQEKKAIQSHQEEIELINIGTEENKREIKIGATLEEG---------VKQKIIQLLREYP 1174
LE KK +S ++ E +NI T + + ++ A L EG + Q+ +Q + E
Sbjct: 159 LESMKK--RSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEEL- 215
Query: 1175 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIK---------SEVQ 1225
L+ + E+ + ++ ++ + P A+K+K E
Sbjct: 216 ------------LEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFD 263
Query: 1226 KQIDAGFLMTVEYPEWVANIVPV-------PKKDGKVRMCVDFRDLNKASPKDNFPLPHI 1278
KQI + V P ++ P K+ GK RM V+++ +NKA+ D + LP+
Sbjct: 264 KQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNK 323
Query: 1279 DVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATY 1338
D L+ K+FS D SG+ Q+ + E R T+F P G + + V+PFGL A + +
Sbjct: 324 DELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIF 383
Query: 1339 QRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGV 1398
QR M F + K VYVDD++V S +EE H+ ++ + ++ ++ + L+ K
Sbjct: 384 QRHMDEAFR-VFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFK 442
Query: 1399 RSGKLLGFIVSQKGIEVDPDKVRAIREMP-APQTEKQVRGFLGRLNYISRFISHMTATCG 1457
+ LG + + + + I + P + +KQ++ FLG L Y S +I +
Sbjct: 443 KKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRK 502
Query: 1458 PIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG 1517
P+ L++N P W E +K L P L P+ LI+ D+ G +L
Sbjct: 503 PLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLK 562
Query: 1518 --QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRM 1575
+ +E E Y S F E Y +K A+ K+ YL + R
Sbjct: 563 AIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLT--PVHFLIRT 620
Query: 1576 DP------IKYIFEKAAVTGKIARWQMLLSEY 1601
D + ++ + G+ RWQ LS Y
Sbjct: 621 DNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 652
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 125 bits (315), Expect = 1e-27
Identities = 88/297 (29%), Positives = 150/297 (49%), Gaps = 12/297 (4%)
Query: 1156 ATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPD 1215
+T E + + L ++P++F +D GL + T+ PV ++ R
Sbjct: 397 STSETEASRLEVMLKNDFPEVF----KDGLGLCTK-EKAEFRTEENAVPVFKRARPVPYG 451
Query: 1216 MALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKD-GKVRMCVDFR--DLNKASPKDN 1272
+++E+ + + G ++ + Y +W A IV + KK GK+R+C DF+ LN A +
Sbjct: 452 SLEAVETELNRLQEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCADFKCSGLNAALKDEF 511
Query: 1273 FPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLI 1332
PLP + + + V+S +D Y Q+++ E ++ T G F Y M FGL
Sbjct: 512 HPLPTSEDIFSRL-KGTVYSQIDLKDAYLQVELDEEAQKLAVINTHRGIFKYLRMTFGLK 570
Query: 1333 NAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPN 1392
A A++Q+ M + + V VY DD+I+ ++ E+H + L ++FER ++Y R++
Sbjct: 571 PAPASFQKIMDKMVSGLTG--VAVYWDDIIISASSIEEHEKILRELFERFKEYGFRVSAE 628
Query: 1393 KCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFI 1449
KC F + LGF V + G D K AIR M AP +KQ+ FLG +++SR +
Sbjct: 629 KCAFAQKQVTFLGF-VDEHGRRPDSKKTEAIRSMKAPTDQKQLASFLGAADWLSRMM 684
Score = 87.0 bits (214), Expect = 5e-16
Identities = 80/320 (25%), Positives = 135/320 (42%), Gaps = 44/320 (13%)
Query: 1856 LRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLR 1915
L+ + LLD V+ ++ ++L+ +H+ H G ++ R
Sbjct: 763 LKLIHGCLLLDDRVIVPKSLQKIVLK---------QLHEGHPGI--------VQMKQKAR 805
Query: 1916 AGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVISSPWPF--SMWG---IDMIGR 1970
+ +W ++ D R C+ CQ + V P +PWP + W ID G
Sbjct: 806 SFVFWRGLDSDIENMVRHCNNCQENSKMPRVVP------LNPWPVPEAPWKRIHIDFAGP 859
Query: 1971 IEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGT 2030
+ NG ++LV +D TK+ E T V + I +G P II+DNGT
Sbjct: 860 L-----NGC-YLLVVVDAKTKYAEV-KLTRSISAVTTIDLLEEIFSIHGYPETIISDNGT 912
Query: 2031 NLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKDWHEMLPYA 2090
L +++ +C+ IEH S+ Y P+ NGA E +KR + K+ ++L
Sbjct: 913 QLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFVDTLKRGIAKIKGEGSVNQQILNKF 972
Query: 2091 LHGYRTTVRSS-TGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNL 2149
L YR T S+ G+TP +G + + + +P+ RV+ KL++ Q N+
Sbjct: 973 LISYRNTPHSALNGSTPAECHFGRKIRTTMSLLMPTDRVLKVPKLTQY--------QQNM 1024
Query: 2150 IEEKRMDAMARGHSYQARMK 2169
+ AR ++Q K
Sbjct: 1025 KHHYELRNGARAKAFQVNQK 1044
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 680
Score = 124 bits (312), Expect = 2e-27
Identities = 126/503 (25%), Positives = 217/503 (43%), Gaps = 34/503 (6%)
Query: 1124 LEQEKKAIQSHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYED 1183
LE KK +S ++ E +NI T + + ++ A L EG + +L + E+
Sbjct: 160 LESMKK--RSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRM--QKTEE 215
Query: 1184 MPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIK---------SEVQKQIDAGFLM 1234
+ L+ + E+ + ++ ++ + P A+K+K E KQI +
Sbjct: 216 L--LEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDL 273
Query: 1235 TVEYPEWVANIVPV-------PKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQ 1287
V P ++ P G RM V+++ +NKA+ D + LP+ D L+
Sbjct: 274 KVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRG 333
Query: 1288 SKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFH 1347
K+FS D SG+ Q+ + E R T+F P G + + V+PFGL A + +QR M F
Sbjct: 334 KKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR 393
Query: 1348 DMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFI 1407
+ K VYVDD++V S +EE H+ ++ + ++ ++ + L+ K + LG
Sbjct: 394 -VFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLE 452
Query: 1408 VSQKGIEVDPDKVRAIREMP-APQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKN 1466
+ + + + I + P + +KQ++ FLG L Y S +I ++ P+ L++N
Sbjct: 453 IDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPNLAQMRQPLQAKLKEN 512
Query: 1467 QPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG--QQDETGK 1524
P W E +K L P L P+ LI+ D+ G +L + +E
Sbjct: 513 VPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTN 572
Query: 1525 KEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDP------I 1578
E Y S F E Y +K A+ K+ YL + R D +
Sbjct: 573 TELICRYRSGSFKAAERNYHSNDKETLAVINTIKKFSIYLT--PVHFLIRTDNTHFKSFV 630
Query: 1579 KYIFEKAAVTGKIARWQMLLSEY 1601
++ + G+ RWQ LS Y
Sbjct: 631 NLNYKGDSKLGRNIRWQAWLSHY 653
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 674
Score = 124 bits (312), Expect = 2e-27
Identities = 110/422 (26%), Positives = 184/422 (43%), Gaps = 28/422 (6%)
Query: 1205 VRQKLRRTHPDMALKIK---------SEVQKQIDAGFLMTVEYPEWVANIVPV------- 1248
++ ++ + P A+K+K E KQI + V P ++ P
Sbjct: 229 MKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA 288
Query: 1249 PKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPE 1308
K+ GK RM V+++ +NKA+ D + P+ D L+ K+FS D SG+ Q+ + E
Sbjct: 289 EKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQE 348
Query: 1309 DREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDE 1368
R T+F P G + + V+PFGL A + +QR M F + K VYVDD++V S +E
Sbjct: 349 SRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNE 407
Query: 1369 EQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP- 1427
E H+ ++ + ++ ++ + L+ K + LG + + + + I + P
Sbjct: 408 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPD 467
Query: 1428 APQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLL 1487
+ +KQ++ FLG L Y S +I + P+ L++N P W E +K L
Sbjct: 468 TLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQ 527
Query: 1488 EPPILVPPVEGRPLIMYLAVFDESMGCVLG--QQDETGKKEHAIYYLSKKFTDCETRYTM 1545
P L P+ LI+ D+ G +L + +E E Y S F E Y
Sbjct: 528 GFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHS 587
Query: 1546 LEKTCCALAWAAKRLRHYLVNHTTWLISRMDP------IKYIFEKAAVTGKIARWQMLLS 1599
+K A+ K+ YL + R D + ++ + G+ RWQ LS
Sbjct: 588 NDKETLAVINTIKKFSIYLT--PVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLS 645
Query: 1600 EY 1601
Y
Sbjct: 646 HY 647
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 659
Score = 118 bits (296), Expect = 2e-25
Identities = 101/387 (26%), Positives = 167/387 (43%), Gaps = 13/387 (3%)
Query: 1250 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPED 1309
++ GK RM V+++ +NKA+ D LP+ D L+ K++S D SG Q+ + E
Sbjct: 277 RRRGKKRMVVNYKAMNKATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKES 336
Query: 1310 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIV-KSTDE 1368
+ T+F P G + + V+PFGL A + + + + K VYVDD++V +T
Sbjct: 337 QLLTAFTCPQGHYQWNVVPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGR 396
Query: 1369 EQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP- 1427
++H ++ + R K + L+ K LG + Q + I + P
Sbjct: 397 KEHYIHVLNILRRCEKLGIILSKKKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPD 456
Query: 1428 APQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLL 1487
+ +KQ++ FLG L Y S +I + + P+ L+++ WND + IK L
Sbjct: 457 RIEDKKQLQRFLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLK 516
Query: 1488 EPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLE 1547
P L P L++ +E G +L + E+ Y S F E Y E
Sbjct: 517 SFPKLYHPEPNDKLVIETDASEEFWGGIL--KAIHNSHEYICRYASGSFKAAERNYHSNE 574
Query: 1548 KTCCALAWAAKRLRHYLVNHTTWLISRMDP------IKYIFEKAAVTGKIARWQMLLSEY 1601
K A+ K+ YL + + R D + + G++ RWQM LS+Y
Sbjct: 575 KELLAVIRVIKKFSIYLT--PSRFLIRTDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQY 632
Query: 1602 DIVFKTQKAIKGSILADHLAYQPLDDY 1628
D + K ++ AD L L +Y
Sbjct: 633 DFDVEHIAGTK-NVFADFLQENTLTNY 658
>POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat
protein; Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1675
Score = 114 bits (284), Expect = 4e-24
Identities = 83/316 (26%), Positives = 157/316 (49%), Gaps = 8/316 (2%)
Query: 1254 KVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKT 1313
K R+ +++ LN D F +PH +++ ++ +FS D +G++ +K+ + ++ T
Sbjct: 1238 KPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWT 1297
Query: 1314 SFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVE 1373
+F G + + V PFG+ NA +QR M F D+ K +Y+DD+++ S +E++H+E
Sbjct: 1298 TFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDL--KFALLYIDDILIASNNEKEHIE 1355
Query: 1374 YLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQ--T 1431
+L F R+++ L+ K ++ + LG + + I + P V I++ + T
Sbjct: 1356 HLKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNT 1415
Query: 1432 EKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPI 1491
K ++ +LG LNY +I ++ GP++K KN ++N E I+ + +
Sbjct: 1416 LKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKP 1475
Query: 1492 LVPPVEGRPLIMYLAVFDESMGCVLGQQDE--TGKKEHAIY-YLSKKFTDCETRYTMLEK 1548
L P E +I+ +E G VL + + +GK I Y S F + +T +T L+
Sbjct: 1476 LERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFGEKKT-WTSLDY 1534
Query: 1549 TCCALAWAAKRLRHYL 1564
A+ A + + YL
Sbjct: 1535 EIEAINEALNKFQIYL 1550
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 666
Score = 110 bits (276), Expect = 3e-23
Identities = 101/377 (26%), Positives = 164/377 (42%), Gaps = 10/377 (2%)
Query: 1250 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPED 1309
++ GK RM V+++ +N+A+ D+ LP++ L+ +FS D SG+ Q+ + E
Sbjct: 288 RRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEES 347
Query: 1310 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEE 1369
++ T+F P G F +KV+PFGL A + +QR M T + K VYVDD+IV S E
Sbjct: 348 QKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCMVYVDDIIVFSNSEL 406
Query: 1370 QHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKV-RAIREMP- 1427
H ++ + + + KY + L+ K LG + KG + + I + P
Sbjct: 407 DHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEI-DKGTHCPQNHILENIHKFPD 465
Query: 1428 APQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLL 1487
+ +K ++ FLG L Y +I + P+ L+K+ W + IK L
Sbjct: 466 RLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKNLG 525
Query: 1488 EPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLE 1547
P L P LI+ D G VL + G E Y S F E Y +
Sbjct: 526 SFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDG-VELICRYSSGSFKQAEKNYHSND 584
Query: 1548 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYI----FEKAAVTGKIARWQMLLSEYDI 1603
K A+ + YL + + Y + + G++ RWQ S+Y
Sbjct: 585 KELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRWQNWFSKYQF 644
Query: 1604 VFKTQKAIKGSILADHL 1620
+ + +K ++LAD L
Sbjct: 645 DVEHLEGVK-NVLADCL 660
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 108 bits (269), Expect = 2e-22
Identities = 96/392 (24%), Positives = 167/392 (42%), Gaps = 48/392 (12%)
Query: 1201 ECPPVRQKLRRTHPDMALK-----------IKSEVQKQIDAGFLMTVEYPEWVANIVPVP 1249
+ PPV +LR +A++ I+ +QK +D G L+ P W ++PV
Sbjct: 161 QVPPVVVELRSGASPVAVRQYPMSKEAREGIRPHIQKFLDLGVLVPCRSP-WNTPLLPVK 219
Query: 1250 KKD-GKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKV-FSFMDGFSGYNQIKMSP 1307
K R D R++NK + +P+ L+ + S +S +D + +++ P
Sbjct: 220 KPGTNDYRPVQDLREINKRVQDIHPTVPNPYNLLSSLPPSYTWYSVLDLKDAFFCLRLHP 279
Query: 1308 EDREKTSFITPW--------GTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEV--- 1356
+ +F W G + +P G N+ TLF + +H+++
Sbjct: 280 NSQPLFAF--EWKDPEKGNTGQLTWTRLPQGFKNS--------PTLFDEALHRDLAPFRA 329
Query: 1357 ---------YVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFI 1407
YVDD++V + E + K+ + L K R++ K R LG++
Sbjct: 330 LNPQVVLLQYVDDLLVAAPTYEDCKKGTQKLLQELSKLGYRVSAKKAQLCQREVTYLGYL 389
Query: 1408 VSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQ 1467
+ + + P + + ++P P T +QVR FLG + +I + P++ L +++
Sbjct: 390 LKEGKRWLTPARKATVMKIPVPTTPRQVREFLGTAGFCRLWIPGFASLAAPLYPLTKESI 449
Query: 1468 PVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDET-GKKE 1526
P +W +E Q+AFD IK LL P L P +P +Y+ DE G G +T G
Sbjct: 450 PFIWTEEHQQAFDHIKKALLSAPALALPDLTKPFTLYI---DERAGVARGVLTQTLGPWR 506
Query: 1527 HAIYYLSKKFTDCETRYTMLEKTCCALAWAAK 1558
+ YLSKK + + K A+A K
Sbjct: 507 RPVAYLSKKLDPVASGWPTCLKAVAAVALLLK 538
Score = 86.3 bits (212), Expect = 9e-16
Identities = 79/264 (29%), Positives = 117/264 (43%), Gaps = 40/264 (15%)
Query: 1959 PFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRY 2018
P W +D I+P G++++LV ID F+ WVEA T +V K I I+ R+
Sbjct: 876 PGVYWEVDFT-EIKP-GRYGNKYLLVFIDTFSGWVEAFPTKTETALIVCKKILEEILPRF 933
Query: 2019 GVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMV- 2077
G+P + +DNG V Q L + I YRPQ +G VE N+ IK + K+
Sbjct: 934 GIPKVLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLAL 993
Query: 2078 -TTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYG--------MEAVLPLEVEIPSLRV 2128
T KDW +LP AL R T G TP+ ++YG E + P + +P L
Sbjct: 994 ETGGKDWVTLLPLALLRARNT-PGRFGLTPYEILYGGPPPILESGETLGPDDRFLPVLFT 1052
Query: 2129 IMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGELVL 2188
++A L ++ + D + Y+ T P F+VG+ VL
Sbjct: 1053 HLKA--------------LEIVRTQIWDQIK--EVYKPGTVTI------PHPFQVGDQVL 1090
Query: 2189 KRRISQQPDPRGKWAPNYEGPYVV 2212
RR +P P ++GPY+V
Sbjct: 1091 VRR--HRP---SSLEPRWKGPYLV 1109
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 272,402,345
Number of Sequences: 164201
Number of extensions: 12261218
Number of successful extensions: 40971
Number of sequences better than 10.0: 302
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 38520
Number of HSP's gapped (non-prelim): 1290
length of query: 2245
length of database: 59,974,054
effective HSP length: 126
effective length of query: 2119
effective length of database: 39,284,728
effective search space: 83244338632
effective search space used: 83244338632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)
Medicago: description of AC147483.10