BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147482.6 + phase: 2 /pseudo
         (675 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

S3B3_HUMAN (Q15393) Splicing factor 3B subunit 3 (Spliceosome as...    58  9e-08

>S3B3_HUMAN (Q15393) Splicing factor 3B subunit 3 (Spliceosome
            associated protein 130) (SAP 130) (SF3b130) (Pre-mRNA
            splicing factor SF3b 130 kDa subunit) (STAF130)
          Length = 1217

 Score = 57.8 bits (138), Expect = 9e-08
 Identities = 26/42 (61%), Positives = 34/42 (80%), Gaps = 1/42 (2%)

Query: 486  KYRWDENQLYIFADDCVPRWLTASYHIDFDTMAGADKFG-IC 526
            +Y+ +ENQL IFADD  PRW+T +  +D+DT+AGADKFG IC
Sbjct: 1013 RYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNIC 1054



 Score = 38.5 bits (88), Expect = 0.058
 Identities = 16/35 (45%), Positives = 26/35 (73%)

Query: 640  LCEQFPTLPMDLQRKIADELDRTRGEILKKLEEYK 674
            LCEQF ++  + Q+ +++ELDRT  E+ KKLE+ +
Sbjct: 1178 LCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIR 1212


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.360    0.160    0.619 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,470,435
Number of Sequences: 164201
Number of extensions: 2470786
Number of successful extensions: 8754
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8752
Number of HSP's gapped (non-prelim): 2
length of query: 675
length of database: 59,974,054
effective HSP length: 117
effective length of query: 558
effective length of database: 40,762,537
effective search space: 22745495646
effective search space used: 22745495646
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 69 (31.2 bits)