BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147363.1 - phase: 0 /pseudo
         (427 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YCBV_PSEDE (P29938) Hypothetical 25.1 kDa protein in COBV 5'regi...    30  9.1

>YCBV_PSEDE (P29938) Hypothetical 25.1 kDa protein in COBV 5'region
           (ORF1)
          Length = 233

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 21/86 (24%), Positives = 44/86 (50%), Gaps = 8/86 (9%)

Query: 277 GRVFALTGTQTENE---DRLIIG----TCYINNTPLVAIIDIGATHCFIAFDCASTLGLD 329
           GR   +T ++ + E    +++ G    T  ++   +  ++D GA++  + ++ A  +GLD
Sbjct: 100 GRATIITDSEGQQEVVLQKMLNGHFETTATVDGKDISMLVDTGASNIALTYEDAEKIGLD 159

Query: 330 MSNMNGEMVVETPAKGSVTTSLVCLK 355
            +N+N  + V T A G    + V L+
Sbjct: 160 PANLNFIVTVMT-ANGRAQAAPVMLQ 184


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.343    0.151    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,040,419
Number of Sequences: 164201
Number of extensions: 1493336
Number of successful extensions: 4873
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4873
Number of HSP's gapped (non-prelim): 1
length of query: 427
length of database: 59,974,054
effective HSP length: 113
effective length of query: 314
effective length of database: 41,419,341
effective search space: 13005673074
effective search space used: 13005673074
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 67 (30.4 bits)