BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147178.14 + phase: 0
(465 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YFCA_HAEIN (P46490) Hypothetical protein HI0198 36 0.18
YRKJ_BACSU (P54437) Hypothetical protein yrkJ 35 0.54
ATPL_CLOAB (O08310) ATP synthase C chain (EC 3.6.3.14) (Lipid-bi... 35 0.54
SECY_MYCCA (P10250) Preprotein translocase secY subunit 33 1.2
Y806_HAEIN (P44054) Hypothetical protein HI0806 33 1.6
Y4HK_RHISN (P55478) Hypothetical 25.4 kDa protein y4hK 33 2.0
MAF1_YEAST (P41910) Repressor of RNA polymerase III transcriptio... 33 2.0
Y441_METJA (Q57883) Hypothetical protein MJ0441 32 2.7
Y397_CLOPE (P50487) Putative purine permease CPE0397 32 2.7
MIND_ECOLI (P18197) Septum site-determining protein minD (Cell d... 32 2.7
BTUC_YERPE (Q8ZDX4) Vitamin B12 transport system permease protei... 32 4.5
YDGG_ECOLI (P77535) Hypothetical UPF0118 protein ydgG 31 5.9
TATA_HELPY (O25088) Sec-independent protein translocase protein ... 31 5.9
NUPC_BACSU (P39141) Pyrimidine nucleoside transport protein 31 7.7
GUDP_PSEPU (P42205) Probable glucarate transporter (D-glucarate ... 31 7.7
>YFCA_HAEIN (P46490) Hypothetical protein HI0198
Length = 255
Score = 36.2 bits (82), Expect = 0.18
Identities = 21/58 (36%), Positives = 32/58 (54%), Gaps = 2/58 (3%)
Query: 88 IGFLGAALGSVGGVGGGGIFVPMLALIIGFDPKSSTAISKCMIMGAALSTVYYNMRLR 145
+GF+ + + ++ G GGG I +P L L+ G P + +K MG ALS Y +R R
Sbjct: 14 VGFVASFIDAIAG-GGGLITIPAL-LMTGMPPAMALGTNKLQAMGGALSASLYFLRKR 69
>YRKJ_BACSU (P54437) Hypothetical protein yrkJ
Length = 261
Score = 34.7 bits (78), Expect = 0.54
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 84 VGSIIGFLGAALGSVGGVGGGGIFVPMLALIIGFDPK----SSTAISKCMIMGAALSTVY 139
+ S + F+ + + G GG I VP++ I+ + SS AI+ +GA + V
Sbjct: 147 LASSLAFIIGGVSGILGAGGAFILVPIMLSILNIPVRVTVASSLAITFLSSIGATVGKVI 206
Query: 140 YNMRLRNPTLDMPLIDYDLALLFQPMLMLGISIGVICNVMFADWMVTVLL 189
L P L + + +L+ P +G S+G N F W++ L+
Sbjct: 207 TGQVLFVPALVLMI----TSLIASP---IGASVGQKVNTKFLQWVLAQLI 249
>ATPL_CLOAB (O08310) ATP synthase C chain (EC 3.6.3.14)
(Lipid-binding protein)
Length = 81
Score = 34.7 bits (78), Expect = 0.54
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 90 FLGAALGSVGGVGGG---GIFVPMLALIIGFDPKSSTAISKCMIMGAALSTV 138
+LGA L ++G +GGG G IG P+S++ + MIMG A + V
Sbjct: 14 YLGAGLAAIGCIGGGVGIGTVTGKAVEAIGRQPESASKVMPTMIMGLAFAEV 65
>SECY_MYCCA (P10250) Preprotein translocase secY subunit
Length = 482
Score = 33.5 bits (75), Expect = 1.2
Identities = 21/61 (34%), Positives = 30/61 (48%), Gaps = 1/61 (1%)
Query: 3 TKMNHKPSSLVIAATWLIMCILVMICNV-SLAERVLKEKEPAKFVEKETKGFLKAMVDFL 61
+K+ PS+L I T LI+CI V I V L R++++ K EK T K +
Sbjct: 422 SKLTQLPSNLAIGGTGLIICISVAIQTVQQLKGRIIQQNFIEKKKEKFTNNINKNKTSHI 481
Query: 62 W 62
W
Sbjct: 482 W 482
>Y806_HAEIN (P44054) Hypothetical protein HI0806
Length = 268
Score = 33.1 bits (74), Expect = 1.6
Identities = 25/124 (20%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 82 IIVGSIIGFLGAALGSVGGVGGGGIFVPMLALIIGFDP-KSSTAISKCMIMGAALSTV-- 138
I + I G + ++ G+GGG + VP+L + P + +A S ++M AL +
Sbjct: 6 IFILLICGICTNMVSAIFGIGGGVLMVPILRTLFPELPIQVISATSLTIVMCTALINLLF 65
Query: 139 YYNMRLRNPTLDMPLIDYDLALLFQPMLMLGISIGVICNVMFADWMVTVLLIILFIGTST 198
++ +++ IDY +L+ +++G+ IG + F+ +++++ + +
Sbjct: 66 FHKQKIK--------IDYINMILWSIAMVIGVQIGFELSFYFSTAIISLIFTVSLSALAI 117
Query: 199 KALI 202
K +
Sbjct: 118 KTFL 121
>Y4HK_RHISN (P55478) Hypothetical 25.4 kDa protein y4hK
Length = 247
Score = 32.7 bits (73), Expect = 2.0
Identities = 27/119 (22%), Positives = 49/119 (40%), Gaps = 21/119 (17%)
Query: 82 IIVGSIIGFLGAALGSVGGVGGGGIFVPMLALIIGFDPKSSTAISKCMIMGAALSTVYYN 141
+I G++IGF+ GS GGG+F+ + L + T A +T YN
Sbjct: 137 LITGAVIGFVSGTTGS-----GGGVFLAPVILFKNWGTAHQT----------AATTAVYN 181
Query: 142 MRLRNPTLDMPLIDYDLALLFQPMLMLGI----SIGVICNVMF--ADWMVTVLLIILFI 194
+ L ++ F P ++ + SIG + + A W+ +L ++L +
Sbjct: 182 LMNSTAALIGACASWNALPNFLPWWLIAVAAGGSIGALIGSRYLSASWLRVILSVLLMV 240
>MAF1_YEAST (P41910) Repressor of RNA polymerase III transcription
MAF1
Length = 395
Score = 32.7 bits (73), Expect = 2.0
Identities = 20/79 (25%), Positives = 34/79 (42%), Gaps = 8/79 (10%)
Query: 3 TKMNHKPSSLVIA--------ATWLIMCILVMICNVSLAERVLKEKEPAKFVEKETKGFL 54
+ +N +PS+L + ++ I L+ I N S + EP FV+ K F+
Sbjct: 209 SSINERPSNLSLGPFGPINEPSSRKIFAYLIAILNASYPDHDFSSVEPTDFVKTSLKTFI 268
Query: 55 KAMVDFLWESGKSSYEPVW 73
+ L+ G+ E VW
Sbjct: 269 SKFENTLYSLGRQPEEWVW 287
>Y441_METJA (Q57883) Hypothetical protein MJ0441
Length = 267
Score = 32.3 bits (72), Expect = 2.7
Identities = 13/31 (41%), Positives = 20/31 (63%)
Query: 87 IIGFLGAALGSVGGVGGGGIFVPMLALIIGF 117
I+GF+ LGS+ G+GGG + P+L I +
Sbjct: 18 IVGFIVGILGSLFGIGGGFLVAPILTFIFDY 48
>Y397_CLOPE (P50487) Putative purine permease CPE0397
Length = 452
Score = 32.3 bits (72), Expect = 2.7
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 103 GGGIFVPM-LALIIGFDPKSSTAISKCMIMGAALSTV 138
GG I VP+ +A +GFD K +TA+ I+G+ L+T+
Sbjct: 39 GGIIVVPLVIATSLGFDSKVTTALISASILGSGLATI 75
>MIND_ECOLI (P18197) Septum site-determining protein minD (Cell
division inhibitor minD)
Length = 269
Score = 32.3 bits (72), Expect = 2.7
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 34 ERVLKEKEPAKFVEKETKGFLKAM 57
ER+L E+ P +F+E+E KGFLK +
Sbjct: 243 ERLLGEERPFRFIEEEKKGFLKRL 266
>BTUC_YERPE (Q8ZDX4) Vitamin B12 transport system permease protein
btuC
Length = 335
Score = 31.6 bits (70), Expect = 4.5
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 40/141 (28%)
Query: 72 VWPEMKFD-------WK---------IIVGSIIGFLGAAL-----------GSVGGVGGG 104
+WPE F W+ I+VG+ + GA + G +G G
Sbjct: 44 IWPEHWFSESGKLFVWQLRLPRSMAVIMVGASLAVSGAVMQALFENPLAEPGLLGVANGA 103
Query: 105 GIFVPMLALIIGFDPKSSTAISKCMIMGAALSTVYYNMRLRNPTLDMPLIDYDLALLFQP 164
G+ + + A+++G +S C I+GA L T R L
Sbjct: 104 GVAL-VTAVLLGHGLLPIWVLSTCAIIGALLMTSILLSFTRRRLLTNA-----------Q 151
Query: 165 MLMLGISIGVICNVMFADWMV 185
+L++G+++G+IC+ M W V
Sbjct: 152 LLLVGVALGIICSAMMT-WAV 171
>YDGG_ECOLI (P77535) Hypothetical UPF0118 protein ydgG
Length = 344
Score = 31.2 bits (69), Expect = 5.9
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 165 MLMLGISIGVICNVMFADWMVTVLLIILFIGTSTKALIKGINTWKKETML 214
++MLG+ + ++C + FA ++ ++ LFI L++ + W+ +L
Sbjct: 14 VIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVL 63
>TATA_HELPY (O25088) Sec-independent protein translocase protein
tatA/E homolog
Length = 79
Score = 31.2 bits (69), Expect = 5.9
Identities = 19/60 (31%), Positives = 29/60 (47%), Gaps = 8/60 (13%)
Query: 183 WMVTVLLIILFIGTS-----TKALIKGINTWKKETMLKKETAKQLEEEPKTGAYQRVQVK 237
W++ +L+I+L G K L GI +KK K+ ++ + EPKT Q Q K
Sbjct: 10 WVIVLLVIVLLFGAKKIPELAKGLGSGIKNFKKAV---KDDEEEAKNEPKTLDAQATQTK 66
>NUPC_BACSU (P39141) Pyrimidine nucleoside transport protein
Length = 393
Score = 30.8 bits (68), Expect = 7.7
Identities = 34/153 (22%), Positives = 66/153 (42%), Gaps = 27/153 (17%)
Query: 80 WKIIVGSIIGFLGAALGSVGGVGGGGIFVPMLALIIGFDPKSSTAISKCMIMGAALSTVY 139
WK++ II ++G AL V G+G + + + I+G S V+
Sbjct: 110 WKVLP-FIIRYIGLALSKVNGMGRLESYNAVASAILG------------------QSEVF 150
Query: 140 YNMRLRNPTLDMPLIDYDLALLFQPMLMLGISIGVICNVMFADWMVTVLLIILFIGTSTK 199
+++ L+ + Y L + + I +G ++ +++VT L++ LF G
Sbjct: 151 ISLKKELGLLNQQRL-YTLCASAMSTVSMSI-VGAYMTMLKPEYVVTALVLNLFGGFIIA 208
Query: 200 ALIKGINTWKKETMLKKETAKQLEEEPKTGAYQ 232
++I K+E ML+ +EEE K ++
Sbjct: 209 SIINPYEVAKEEDMLR------VEEEEKQSFFE 235
>GUDP_PSEPU (P42205) Probable glucarate transporter (D-glucarate
permease)
Length = 456
Score = 30.8 bits (68), Expect = 7.7
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 166 LMLGISIGVICNVMFADWMVTVLLIILFIGTSTKAL 201
++L +S+ +ICN + ADWMV + + F G + AL
Sbjct: 323 MVLSMSM-IICNYVDADWMVVCFMALAFFGKAIGAL 357
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.351 0.156 0.553
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,372,133
Number of Sequences: 164201
Number of extensions: 1801444
Number of successful extensions: 10144
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 10124
Number of HSP's gapped (non-prelim): 26
length of query: 465
length of database: 59,974,054
effective HSP length: 114
effective length of query: 351
effective length of database: 41,255,140
effective search space: 14480554140
effective search space used: 14480554140
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC147178.14