BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147178.10 + phase: 0
(161 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RIR1_BHV1C (P50646) Ribonucleoside-diphosphate reductase large c... 30 2.4
UN86_CAEEL (P13528) Transcription factor unc-86 (Uncoordinated p... 29 4.0
LYL1_MOUSE (P27792) Lyl-1 protein (Lymphoblastic leukemia derive... 29 4.0
LYL1_HUMAN (P12980) Lyl-1 protein (Lymphoblastic leukemia derive... 29 4.0
LMA1_HUMAN (P25391) Laminin alpha-1 chain precursor (Laminin A c... 29 4.0
CABC_BORBU (O51752) Coenzyme A biosynthesis bifunctional protein... 29 4.0
WC11_BOVIN (P30205) Antigen WC1.1 precursor 29 5.3
UFO3_MAIZE (P16167) Flavonol 3-O-glucosyltransferase (EC 2.4.1.9... 28 6.9
UFO2_MAIZE (P16165) Flavonol 3-O-glucosyltransferase (EC 2.4.1.9... 28 6.9
UFO1_MAIZE (P16166) Flavonol 3-O-glucosyltransferase (EC 2.4.1.9... 28 6.9
SYC_MOUSE (Q9ER72) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst... 28 6.9
RS13_THEVO (Q97B96) 30S ribosomal protein S13P 28 6.9
RPOB_LISMO (Q9RLT9) DNA-directed RNA polymerase beta chain (EC 2... 28 6.9
RPOB_LISIN (Q92F22) DNA-directed RNA polymerase beta chain (EC 2... 28 6.9
FRI1_RANCA (P07229) Ferritin, higher subunit (Ferritin H) 28 6.9
UFOG_HORVU (P14726) Flavonol 3-O-glucosyltransferase (EC 2.4.1.9... 28 9.0
RPOB_STRMU (Q8DS46) DNA-directed RNA polymerase beta chain (EC 2... 28 9.0
RPB4_ENTFC (Q8GCR3) DNA-directed RNA polymerase beta chain (EC 2... 28 9.0
RPB3_ENTFC (Q8GCR5) DNA-directed RNA polymerase beta chain (EC 2... 28 9.0
RPB2_ENTFC (Q8GCR4) DNA-directed RNA polymerase beta chain (EC 2... 28 9.0
>RIR1_BHV1C (P50646) Ribonucleoside-diphosphate reductase large
chain (EC 1.17.4.1) (Ribonucleotide reductase)
Length = 787
Score = 30.0 bits (66), Expect = 2.4
Identities = 22/67 (32%), Positives = 32/67 (46%), Gaps = 4/67 (5%)
Query: 73 DLDVLEMEEREKVVRHMWDVYTNSRRIRLPRFWQEAFEAAYEELTSDVPGVRDDAITEIA 132
D + +E RE VV ++D R L R AF A YE L + GV + ++A
Sbjct: 343 DRYLAHLEGREGVVWTLFD----DRASHLSRLHGPAFTAEYERLEREGLGVETVPVQDLA 398
Query: 133 KMSVRSV 139
+ VRS+
Sbjct: 399 FLIVRSI 405
>UN86_CAEEL (P13528) Transcription factor unc-86 (Uncoordinated
protein 86)
Length = 467
Score = 29.3 bits (64), Expect = 4.0
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Query: 120 VPGVRDDAITEIAKMSVRSVNYD-PPPIQSTVSFPFSTHGAVS 161
VP DD +T + ++ +Y PPP Q ++ PFST S
Sbjct: 208 VPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIAS 250
>LYL1_MOUSE (P27792) Lyl-1 protein (Lymphoblastic leukemia derived
sequence 1)
Length = 278
Score = 29.3 bits (64), Expect = 4.0
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 69 PIHDDLDVLEMEEREKVVRHMWDVYTNSRRIRLPRFWQEAFEAAYEELTSDVPGVRDD-- 126
P H +LD+ + + +KV R V+TNSR R+ Q+ A+ EL +P D
Sbjct: 132 PSHSELDLADGHQPQKVARR---VFTNSRE----RWRQQHVNGAFAELRKLLPTHPPDRK 184
Query: 127 -AITEIAKMSVRSVNY 141
+ E+ +++++ + +
Sbjct: 185 LSKNEVLRLAMKYIGF 200
>LYL1_HUMAN (P12980) Lyl-1 protein (Lymphoblastic leukemia derived
sequence 1)
Length = 267
Score = 29.3 bits (64), Expect = 4.0
Identities = 21/76 (27%), Positives = 39/76 (50%), Gaps = 10/76 (13%)
Query: 69 PIHDDLDVLEMEEREKVVRHMWDVYTNSRRIRLPRFWQEAFEAAYEELTSDVPGVRDD-- 126
P H +LD+ E + +KV R V+TNSR R+ Q+ A+ EL +P D
Sbjct: 120 PSHCELDLAEGHQPQKVARR---VFTNSRE----RWRQQNVNGAFAELRKLLPTHPPDRK 172
Query: 127 -AITEIAKMSVRSVNY 141
+ E+ +++++ + +
Sbjct: 173 LSKNEVLRLAMKYIGF 188
>LMA1_HUMAN (P25391) Laminin alpha-1 chain precursor (Laminin A chain)
Length = 3075
Score = 29.3 bits (64), Expect = 4.0
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 56 SGNLNTLSSDLDTPIHDDL----------DVLEMEEREKVVRHMWDVYTNSRRIRLPRF 104
S N NTL+ ++ T D+L D L +E R V +WD+ + S R+ P F
Sbjct: 2136 STNYNTLTLNVKTQEPDNLLFYLGSSTASDFLAVEMRRGRVAFLWDLGSGSTRLEFPDF 2194
>CABC_BORBU (O51752) Coenzyme A biosynthesis bifunctional protein
coaBC (DNA/pantothenate metabolism flavoprotein)
[Includes: Phosphopantothenoylcysteine decarboxylase (EC
4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine
ligase (EC 6.3.2.5) (Phosph
Length = 390
Score = 29.3 bits (64), Expect = 4.0
Identities = 17/63 (26%), Positives = 30/63 (46%), Gaps = 5/63 (7%)
Query: 77 LEMEEREKVVRHMWDVYTNS-RRIRLPRFWQE---AFEAAYEELTSDVPGVRDDAITEIA 132
LE + K++ ++WD+ N I++ + W A Y ++ G+ DDA+T I
Sbjct: 51 LETISKNKIITNLWDLDHNEVEHIKIAK-WAHLILVIPATYNTISKIASGIADDALTTII 109
Query: 133 KMS 135
S
Sbjct: 110 SAS 112
>WC11_BOVIN (P30205) Antigen WC1.1 precursor
Length = 1436
Score = 28.9 bits (63), Expect = 5.3
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 7 LPTTTAAINKKENMDSGLFGKGRYKFWALAAILLLAFWSMFTGTVSLRWSGNLNTLSSDL 66
LPTTTA N G+F L ++L L + T LRW LSS
Sbjct: 1261 LPTTTAGTRTTSNSLPGIFSLPGVLCLILGSLLFLVL--VILVTQLLRWRAERRALSSYE 1318
Query: 67 DT---PIHDDLDVL 77
D ++++LD L
Sbjct: 1319 DALAEAVYEELDYL 1332
>UFO3_MAIZE (P16167) Flavonol 3-O-glucosyltransferase (EC 2.4.1.91)
(UDP-glucose flavonoid 3-O-glucosyltransferase)
(Bronze-1) (Bz-W22 allele)
Length = 471
Score = 28.5 bits (62), Expect = 6.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 143 PPPIQSTVSFPFSTHGAV 160
PPP + V+FPFS+H AV
Sbjct: 10 PPPHVAVVAFPFSSHAAV 27
>UFO2_MAIZE (P16165) Flavonol 3-O-glucosyltransferase (EC 2.4.1.91)
(UDP-glucose flavonoid 3-O-glucosyltransferase)
(Bronze-1) (Bz-Mc2 allele)
Length = 471
Score = 28.5 bits (62), Expect = 6.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 143 PPPIQSTVSFPFSTHGAV 160
PPP + V+FPFS+H AV
Sbjct: 10 PPPHVAVVAFPFSSHAAV 27
>UFO1_MAIZE (P16166) Flavonol 3-O-glucosyltransferase (EC 2.4.1.91)
(UDP-glucose flavonoid 3-O-glucosyltransferase)
(Bronze-1) (Bz-McC allele)
Length = 471
Score = 28.5 bits (62), Expect = 6.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 143 PPPIQSTVSFPFSTHGAV 160
PPP + V+FPFS+H AV
Sbjct: 10 PPPHVAVVAFPFSSHAAV 27
>SYC_MOUSE (Q9ER72) Cysteinyl-tRNA synthetase (EC 6.1.1.16)
(Cysteine--tRNA ligase) (CysRS)
Length = 831
Score = 28.5 bits (62), Expect = 6.9
Identities = 18/70 (25%), Positives = 35/70 (49%), Gaps = 6/70 (8%)
Query: 91 DVYTNSRRIRLPRFWQEAFEAAYEELTSDVPGVRDDAITEIAKMSVRSVNYDPPPIQSTV 150
+V NS +LP+FW+E F E L P D +T +++ VN+ + +
Sbjct: 288 EVTDNSIFSKLPKFWEEEFHKDMEALNVLPP----DVLTRVSEYVPEIVNFVQKIVDN-- 341
Query: 151 SFPFSTHGAV 160
+ ++++G+V
Sbjct: 342 GYGYASNGSV 351
>RS13_THEVO (Q97B96) 30S ribosomal protein S13P
Length = 171
Score = 28.5 bits (62), Expect = 6.9
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 58 NLNTLSSDLDTPIHDDLDVLEMEEREKVVRH 88
NLN +++DLD + +D+++++ K +RH
Sbjct: 113 NLNLVTTDLDVQVQEDINLMKKIRSYKGIRH 143
>RPOB_LISMO (Q9RLT9) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1184
Score = 28.5 bits (62), Expect = 6.9
Identities = 16/48 (33%), Positives = 27/48 (55%), Gaps = 5/48 (10%)
Query: 91 DVYTNSRRIRLPRFWQEAFEAAY--EELTSDVPGVRDDAITEIAKMSV 136
DVYT+ I + F EA + EE+T D+P V +DA+ ++ + +
Sbjct: 786 DVYTS---IHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGI 830
>RPOB_LISIN (Q92F22) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1184
Score = 28.5 bits (62), Expect = 6.9
Identities = 16/48 (33%), Positives = 27/48 (55%), Gaps = 5/48 (10%)
Query: 91 DVYTNSRRIRLPRFWQEAFEAAY--EELTSDVPGVRDDAITEIAKMSV 136
DVYT+ I + F EA + EE+T D+P V +DA+ ++ + +
Sbjct: 786 DVYTS---IHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGI 830
>FRI1_RANCA (P07229) Ferritin, higher subunit (Ferritin H)
Length = 176
Score = 28.5 bits (62), Expect = 6.9
Identities = 15/47 (31%), Positives = 29/47 (60%), Gaps = 1/47 (2%)
Query: 58 NLNTLSSD-LDTPIHDDLDVLEMEEREKVVRHMWDVYTNSRRIRLPR 103
+L+ + SD +D + D L+ +EE+ K ++ + D TN +R+ LP+
Sbjct: 113 DLHKVGSDKVDPHLCDFLETEYLEEQVKSIKQLGDYITNLKRLGLPQ 159
>UFOG_HORVU (P14726) Flavonol 3-O-glucosyltransferase (EC 2.4.1.91)
(UDP-glucose flavonoid 3-O-glucosyltransferase)
(Bronze-1)
Length = 455
Score = 28.1 bits (61), Expect = 9.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 143 PPPIQSTVSFPFSTHGAV 160
PPP + V+FPFS+H AV
Sbjct: 4 PPPHIAVVAFPFSSHAAV 21
>RPOB_STRMU (Q8DS46) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1187
Score = 28.1 bits (61), Expect = 9.0
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 91 DVYTNSRRIRLPRFWQEAFEAAY--EELTSDVPGVRDDAITEIAKMSV 136
DVYT+ + L F E + EE+T ++P V +DA+ ++ +M +
Sbjct: 781 DVYTS---VHLEEFESETRDTKLGPEEITREIPNVGEDALKDLDEMGI 825
>RPB4_ENTFC (Q8GCR3) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1208
Score = 28.1 bits (61), Expect = 9.0
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 91 DVYTNSRRIRLPRFWQEAFEAAY--EELTSDVPGVRDDAITEIAKMSV 136
DVYT+ I + + EA + EE+T ++P V +DA+ ++ +M +
Sbjct: 784 DVYTS---IHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGI 828
>RPB3_ENTFC (Q8GCR5) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1208
Score = 28.1 bits (61), Expect = 9.0
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 91 DVYTNSRRIRLPRFWQEAFEAAY--EELTSDVPGVRDDAITEIAKMSV 136
DVYT+ I + + EA + EE+T ++P V +DA+ ++ +M +
Sbjct: 784 DVYTS---IHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGI 828
>RPB2_ENTFC (Q8GCR4) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1208
Score = 28.1 bits (61), Expect = 9.0
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 91 DVYTNSRRIRLPRFWQEAFEAAY--EELTSDVPGVRDDAITEIAKMSV 136
DVYT+ I + + EA + EE+T ++P V +DA+ ++ +M +
Sbjct: 784 DVYTS---IHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGI 828
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,345,590
Number of Sequences: 164201
Number of extensions: 729300
Number of successful extensions: 2083
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2076
Number of HSP's gapped (non-prelim): 22
length of query: 161
length of database: 59,974,054
effective HSP length: 101
effective length of query: 60
effective length of database: 43,389,753
effective search space: 2603385180
effective search space used: 2603385180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC147178.10