BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147013.3 + phase: 0 
         (380 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

POFA_SCHPO (Q9P7W4) F-box/WD-repeat protein pof10 (Skp1-binding ...    42  0.003
FX27_HUMAN (Q8NI29) F-box only protein 27 (F-box/G-domain protei...    33  1.2
FXLC_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and leuci...    32  2.7
FXL8_MOUSE (Q8CIG9) F-box/LRR-repeat protein 8 (F-box and leucin...    32  2.7
ALG8_HUMAN (Q9BVK2) Probable dolichyl pyrophosphate Glc1Man9GlcN...    32  3.5
YI60_THEMA (Q9X2H4) Hypothetical UPF0097 protein TM1860                31  4.6
FLIR_AQUAE (O67773) Flagellar biosynthetic protein fliR                31  4.6
SLM9_SCHPO (O74309) Mitotic control protein slm9                       31  6.0
PLR1_MOUSE (Q922V4) Pleiotropic regulator 1                            31  6.0
FXLC_MOUSE (Q9EPX5) F-box/LRR-repeat protein 12 (F-box and leuci...    31  6.0
FX34_HUMAN (Q9NWN3) F-box only protein 34                              31  6.0
FX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26)      31  6.0
FX22_HUMAN (Q8NEZ5) F-box only protein 22 (F-box protein FBX22p44)     30  7.8

>POFA_SCHPO (Q9P7W4) F-box/WD-repeat protein pof10 (Skp1-binding
          protein 2)
          Length = 662

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 19/45 (42%), Positives = 27/45 (59%)

Query: 16 AETTANKPLPFLPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSD 60
          +    N+ +  LP+E+++II   L  RSLL  +C CK WK L SD
Sbjct: 23 SSNNTNRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSD 67


>FX27_HUMAN (Q8NI29) F-box only protein 27 (F-box/G-domain protein
          5)
          Length = 283

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 1  MGGENVNNTDSTLPVAETTANKPLPF--LPEELIVIILLRLPVRSLL-RFKCVCKSWKTL 57
          MG        + +P  E    + L    LP EL++++L  +P R+LL R + VC+ W+ L
Sbjct: 1  MGASVSRGRAARVPAPEPEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRAL 60


>FXLC_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and
          leucine-rich repeat protein 12) (F-box protein FBL12)
          Length = 326

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 27 LPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSD 60
          LP+ +++ I   LPVR  +R   VC  WK L  D
Sbjct: 7  LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDD 40


>FXL8_MOUSE (Q8CIG9) F-box/LRR-repeat protein 8 (F-box and
          leucine-rich repeat protein 8) (F-box protein FBL8)
          Length = 374

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 27 LPEELIVIILLRLPVRSLLRFKCVCKSW------KTLFSDTHFANNHFLISTVYPQLVAC 80
          LPEE++ +I   LP+R L     VC++W       T++SD   + +  L   + P L +C
Sbjct: 8  LPEEVLALIFRDLPLRDLAVATRVCRAWAAAAANSTVWSDKSISCDCELEDLLPPYLSSC 67


>ALG8_HUMAN (Q9BVK2) Probable dolichyl pyrophosphate Glc1Man9GlcNAc2
           alpha-1,3-glucosyltransferase (EC 2.4.1.-)
           (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl
           glucosyltransferase) (HUSSY-02)
          Length = 526

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)

Query: 23  PLPFLPEELIVIILLRL--PVRSLLRFKCVCKSWKTLFSDTHFANNHFLISTVYPQLVAC 80
           PL F   EL + ILL L   + S+   K + +  K LF+   +    +L+  + P  V C
Sbjct: 419 PLLFTAPELPIKILLMLLFTIYSISSLKTLFRKEKPLFN---WMETFYLLG-LGPLEVCC 474

Query: 81  ESVSAYRTWEIKTYPIESLLENSSTTVIPVSNTGHQRY 118
           E V  + +W++K YP   LL  S    + V+    + Y
Sbjct: 475 EFVFPFTSWKVK-YPFIPLLLTSVYCAVGVTYAWFKLY 511


>YI60_THEMA (Q9X2H4) Hypothetical UPF0097 protein TM1860
          Length = 187

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 27/113 (23%), Positives = 48/113 (41%), Gaps = 11/113 (9%)

Query: 147 LKSKSSPTIDRFIYYGFGYDQVNHKYKLLAVKAFSRITETMIYTFGENSCKNVEVKDFPR 206
           +K ++S  I++ +  GFG   V+ +   L +     + E  I    E+ C+   V+ FP 
Sbjct: 13  VKKQASEIIEKLMKRGFGATWVSEENMHLTLFFLGEVDEQKISEIAEHLCR--RVRGFPS 70

Query: 207 YPPNRKHLGKF---VSGTLNWIVDERDGRATILSFDIEKETYRQVLLPQHGYA 256
           +    K  G F   +S  + W+  E   R   L  ++  E      L  HG++
Sbjct: 71  FSFTVKGFGYFKRKMSPRVFWLGVENTDRLMKLYEELRNE------LSHHGFS 117


>FLIR_AQUAE (O67773) Flagellar biosynthetic protein fliR
          Length = 258

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 320 FISENGVVLLMNTSSSQLILYNLNSRGLYFPRIPPSYLNIYYIEPKLDLHIYHES 374
           F +  G ++ ++    + I+  L      F R+P    NI+Y+ P++ L+ ++ES
Sbjct: 125 FFTLYGTLIFLSLGGGEFIILGLAES---FKRLPVGSFNIFYLNPEVFLNFFYES 176


>SLM9_SCHPO (O74309) Mitotic control protein slm9
          Length = 807

 Score = 30.8 bits (68), Expect = 6.0
 Identities = 15/58 (25%), Positives = 26/58 (43%), Gaps = 4/58 (6%)

Query: 268 CICVCTSFLDTRWQLWMMKKYGVAESWTKLMSIPHENLLISNISLWPCVEPLFISENG 325
           C  V T  L     +W +K +    S    + + H N  +S I+  P +E  F+++ G
Sbjct: 553 CCIVSTGLL----YIWNIKNFEAIHSPVSTLPLFHSNFSVSKIARGPSIEQFFVTKQG 606


>PLR1_MOUSE (Q922V4) Pleiotropic regulator 1
          Length = 513

 Score = 30.8 bits (68), Expect = 6.0
 Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 30/129 (23%)

Query: 77  LVACESVSAYRTWEIKTYPIESLLENSSTTVIPVSNTGHQRYTILGSCNGFLCLYDNYQR 136
           LV C   S  R W+++T      L   +  V  V     +   I GS          +  
Sbjct: 302 LVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGS----------HDT 351

Query: 137 CVRLWNPSINLKSKSSPTIDRFIYYGFGYDQVNHKYKLLAVKAFSRITETMIYTFGENSC 196
            +RLW+    +  K+  T+             NHK  + AV     +   ++YTF   S 
Sbjct: 352 TIRLWD---LVAGKTRVTL------------TNHKKSVRAV-----VLHPLLYTFASGSP 391

Query: 197 KNVEVKDFP 205
            N++   FP
Sbjct: 392 DNIKQWKFP 400


>FXLC_MOUSE (Q9EPX5) F-box/LRR-repeat protein 12 (F-box and
          leucine-rich repeat protein 12) (F-box protein FBL12)
          Length = 326

 Score = 30.8 bits (68), Expect = 6.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 27 LPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSD 60
          LP+ +++ I   LPVR  +R   VC  WK L  D
Sbjct: 7  LPDLVLLEIFSYLPVRDRIRISRVCHRWKRLVDD 40


>FX34_HUMAN (Q9NWN3) F-box only protein 34
          Length = 305

 Score = 30.8 bits (68), Expect = 6.0
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 22/71 (30%)

Query: 7   NNTDSTLPVAETTANKP----------------------LPFLPEELIVIILLRLPVRSL 44
           ++ +STLPV E ++ K                       + FLP  ++V I   LP +SL
Sbjct: 130 SSVESTLPVLEASSWKKQVSHDFLETRFKIQQLLEPQQYMAFLPHHIMVKIFRLLPTKSL 189

Query: 45  LRFKCVCKSWK 55
           +  KC C  +K
Sbjct: 190 VALKCTCCYFK 200


>FX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26)
          Length = 278

 Score = 30.8 bits (68), Expect = 6.0
 Identities = 15/35 (42%), Positives = 24/35 (67%), Gaps = 1/35 (2%)

Query: 24 LPFLPEELIVIILLRLPVRSLL-RFKCVCKSWKTL 57
          L  LP EL+V +L  +P RSL+ R + VC++W+ +
Sbjct: 18 LDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDI 52


>FX22_HUMAN (Q8NEZ5) F-box only protein 22 (F-box protein
          FBX22p44)
          Length = 403

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 11/26 (42%), Positives = 18/26 (68%)

Query: 30 ELIVIILLRLPVRSLLRFKCVCKSWK 55
          E++  +L  LP ++LLR  CVC+ W+
Sbjct: 28 EVVERVLTFLPAKALLRVACVCRLWR 53


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,526,796
Number of Sequences: 164201
Number of extensions: 1983096
Number of successful extensions: 4081
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4073
Number of HSP's gapped (non-prelim): 15
length of query: 380
length of database: 59,974,054
effective HSP length: 112
effective length of query: 268
effective length of database: 41,583,542
effective search space: 11144389256
effective search space used: 11144389256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)