Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147010.3 - phase: 0 /pseudo
         (675 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

HGL2_ARATH (P46607) Homeobox protein GLABRA2 (Homeobox-leucine z...   218  4e-56
FWA_ARATH (Q9FVI6) Homeobox protein FWA                               180  9e-45
RX2_BRARE (O42357) Retinal homeobox protein Rx2                        46  4e-04
HAT7_ARATH (Q00466) Homeobox-leucine zipper protein HAT7 (HD-ZIP...    46  4e-04
ATH6_ARATH (P46668) Homeobox-leucine zipper protein ATHB-6 (Home...    46  4e-04
HAT5_ARATH (Q02283) Homeobox-leucine zipper protein HAT5 (HD-ZIP...    45  5e-04
ATH7_ARATH (P46897) Homeobox-leucine zipper protein ATHB-7 (Home...    45  5e-04
HAT1_ARATH (P46600) Homeobox-leucine zipper protein HAT1 (HD-ZIP...    42  0.004
PMXB_MOUSE (O35690) Paired mesoderm homeobox protein 2B (Paired-...    42  0.005
PMXB_HUMAN (Q99453) Paired mesoderm homeobox protein 2B (Paired-...    42  0.005
HT14_ARATH (P46665) Homeobox-leucine zipper protein HAT14 (HD-ZI...    42  0.007
HM23_CAEEL (P34663) Homeobox protein ceh-23                            42  0.007
ATH5_ARATH (P46667) Homeobox-leucine zipper protein ATHB-5 (HD-Z...    42  0.007
HMAA_SCHGR (P29556) Homeobox protein abdominal-A homolog (Fragment)    41  0.009
SHX2_RAT (O35750) Short stature homeobox protein 2 (Paired famil...    41  0.012
SHX2_MOUSE (P70390) Short stature homeobox protein 2 (Homeobox p...    41  0.012
SHX2_HUMAN (O60902) Short stature homeobox protein 2 (Paired-rel...    41  0.012
RX3_BRARE (O42358) Retinal homeobox protein Rx3                        41  0.012
SHOX_HUMAN (O15266) Short stature homeobox protein (Short statur...    40  0.015
RX2_ORYLA (Q9I9A2) Retinal homeobox protein Rx2                        40  0.015

>HGL2_ARATH (P46607) Homeobox protein GLABRA2 (Homeobox-leucine
           zipper protein ATHB-10) (HD-ZIP protein ATHB-10)
          Length = 745

 Score =  218 bits (555), Expect = 4e-56
 Identities = 135/404 (33%), Positives = 220/404 (54%), Gaps = 14/404 (3%)

Query: 279 FPTIVTKAETIKVFEIGSRGSR-DGALLLMNEEMHILSPLVRPREFNIIRYCKKVDPGVW 337
           F  +++KA T+ V   G   SR DGA+ LM  EM +L+P+V  RE   +R C+++ P  W
Sbjct: 341 FACLISKAATVDVIRQGEGPSRIDGAIQLMFGEMQLLTPVVPTREVYFVRSCRQLSPEKW 400

Query: 338 VITDVSF---DSSRPNTAPLSRGWKHPSGCIIREMPHGGCLVTWVEHVEVEDKIHTHYVY 394
            I DVS    DS+    A L +  K PSGCII +  +G   VTWVEH++V        ++
Sbjct: 401 AIVDVSVSVEDSNTEKEASLLKCRKLPSGCIIEDTSNGHSKVTWVEHLDVSAST-VQPLF 459

Query: 395 RDLVGEYNLYGAESWIKELQRMCERSLGSNVEAIPVEETIGVIQTLEGRNSVIKLADRMV 454
           R LV     +GA  W+  LQ  CER +      +P ++++GV  TL GR SV+K+A RM 
Sbjct: 460 RSLVNTGLAFGARHWVATLQLHCERLVFFMATNVPTKDSLGVT-TLAGRKSVLKMAQRMT 518

Query: 455 KMFCECLTMPGQVELNHLTLDSIGGVRVSIRATTDDDASQPNGTVVTAATTLWLPLPAQK 514
           + F   +      +   +T  +   +RVS R    D   +P G +V A+++LWLP+    
Sbjct: 519 QSFYRAIAASSYHQWTKITTKTGQDMRVSSRKNLHDPG-EPTGVIVCASSSLWLPVSPAL 577

Query: 515 VFEFLKDPTKRSQWNGLSCGNPMHEIAHISNGPYHGNCISVIKSFIPTQRQMVILQESFT 574
           +F+F +D  +R +W+ LS G  +  IA++S G   GN ++ I++    ++ + +LQ+S T
Sbjct: 578 LFDFFRDEARRHEWDALSNGAHVQSIANLSKGQDRGNSVA-IQTVKSREKSIWVLQDSST 636

Query: 575 SSVGSYVIYAPIDRKTMDVALRGEDSKELPILPYGLIVCS---KNQANLNAPFGASKSIE 631
           +S  S V+YAP+D  T  + L G D   + ILP G  +     +++  +       ++ +
Sbjct: 637 NSYESVVVYAPVDINTTQLVLAGHDPSNIQILPSGFSIIPDGVESRPLVITSTQDDRNSQ 696

Query: 632 DGSLITLAAQTY---AIGQVLNVDSLNDINSQLASTILNVKDAL 672
            GSL+TLA QT    +    LN++S+  + + ++ T+ N+K +L
Sbjct: 697 GGSLLTLALQTLINPSPAAKLNMESVESVTNLVSVTLHNIKRSL 740



 Score = 78.6 bits (192), Expect = 5e-14
 Identities = 41/103 (39%), Positives = 58/103 (55%), Gaps = 12/103 (11%)

Query: 2   KECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIRNENL 61
           KE  HPDE QR QL+ ++GL P+Q+K WFQN+R  +K   ER  N  L+ E +K+R EN 
Sbjct: 119 KETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKAELEKLREENK 178

Query: 62  KIKEELKA--KICLDCGGSPFPMKDHQNFVQEMKQENAQLKQE 102
            ++E        C +CGG P           ++  EN++LK E
Sbjct: 179 AMRESFSKANSSCPNCGGGP----------DDLHLENSKLKAE 211


>FWA_ARATH (Q9FVI6) Homeobox protein FWA
          Length = 686

 Score =  180 bits (457), Expect = 9e-45
 Identities = 114/403 (28%), Positives = 202/403 (49%), Gaps = 25/403 (6%)

Query: 278 LFPTIVTKAETIKVFEIGSRGSRDGALLLMNEEMHILSPLVRPREFNIIRYCKKVDPGVW 337
           +F  IV  A T KV   GS G++ G+L  +  E  ++SPLV  R+   IRYCK++  G+W
Sbjct: 297 VFAPIVPVASTHKVISTGSGGTKSGSLQQIQAEFQVISPLVPKRKVTFIRYCKEIRQGLW 356

Query: 338 VITDVSFDSSRPNTAPLSRGWKHPSGCIIREMPHGGCLVTWVEHVEVEDKIHTHYVYRDL 397
           V+ DV+  +  P   P     + PSG II ++ +G   VTW+E  E  +  H H +Y+ L
Sbjct: 357 VVVDVT-PTQNPTLLPYGCSKRLPSGLIIDDLSNGYSQVTWIEQAEYNES-HIHQLYQPL 414

Query: 398 VGEYNLYGAESWIKELQRMCERSLGSNVEAIPVEETIGVIQTLEGRNSVIKLADRMVKMF 457
           +G     GA+ W+  LQR CE SL +       E + G+  + +G   ++KLA RM   +
Sbjct: 415 IGYGIGLGAKRWLATLQRHCE-SLSTLSSTNLTEISPGL--SAKGATEIVKLAQRMTLNY 471

Query: 458 CECLTMPGQVELNHLTLDSIGGVRVSIRATTDDDASQPNGTVVTAATTLWLPLPAQKVFE 517
              +T P   +   + ++++      +     ++  +  G V++A+T++WLP+    +F 
Sbjct: 472 YRGITSPSVDKWQKIQVENVAQNMSFMIRKNVNEPGELTGIVLSASTSVWLPVNQHTLFA 531

Query: 518 FLKDPTKRSQWNGLSCGNPMHEIAHISNGPYHGNCISVIKSFIPTQRQMVILQESFTSSV 577
           F+   + R +W+ L+    M E   I     HGN IS++K        M++LQE +  + 
Sbjct: 532 FISHLSFRHEWDILTNDTTMEETIRIQKAKRHGNIISLLKI---VNNGMLVLQEIWNDAS 588

Query: 578 GSYVIYAPIDRKTMDVALRGEDSKELPILPYGLIVCSKNQANLNAPFGASKSIEDGSLIT 637
           G+ V+YAP++  ++++  RGE+S  +  LP G  +          P G + S   G+   
Sbjct: 589 GAMVVYAPVETNSIELVKRGENSDSVKFLPSGFSI---------VPDGVNGSYHRGNTGG 639

Query: 638 LAAQTYAIGQVLNVD--------SLNDINSQLASTILNVKDAL 672
               T+ +  ++ ++        ++  + + +A TI+ +K AL
Sbjct: 640 GCLLTFGLQILVGINPTAALIQGTVKSVETLMAHTIVKIKSAL 682



 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 33/101 (32%), Positives = 57/101 (55%), Gaps = 1/101 (0%)

Query: 6   HPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIRNENLKIKE 65
           HP E QR +L  ++ +   Q+K+WFQNKR + K  ++   N TLR E+D++     +++ 
Sbjct: 64  HPTEEQRYELGQRLNMGVNQVKNWFQNKRNLEKINNDHLENVTLREEHDRLLATQDQLRS 123

Query: 66  ELKAKICLDCGGSPFPMKDHQNFVQEMKQENAQLKQEASEF 106
            +   +C  CG +     D +  VQ++  ENA L++E  +F
Sbjct: 124 AMLRSLCNICGKAT-NCGDTEYEVQKLMAENANLEREIDQF 163


>RX2_BRARE (O42357) Retinal homeobox protein Rx2
          Length = 327

 Score = 45.8 bits (107), Expect = 4e-04
 Identities = 21/59 (35%), Positives = 38/59 (63%), Gaps = 1/59 (1%)

Query: 2   KECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIRNEN 60
           ++ H+PD   R +LA+K+ L   +++ WFQN+RA  + Q + +T GT++  +  IR+ N
Sbjct: 155 EKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKMDT-GTMKLHDSPIRSFN 212


>HAT7_ARATH (Q00466) Homeobox-leucine zipper protein HAT7 (HD-ZIP
           protein 7) (HD-ZIP protein ATHB-3)
          Length = 251

 Score = 45.8 bits (107), Expect = 4e-04
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 25/102 (24%)

Query: 11  QRCQLAVKIGLEPKQIKSWFQNKRAMLK-HQHERETNG------TLRRENDKIRNENLKI 63
           ++ QLA  +GL+P+QI  WFQN+RA  K  Q ER+ +        L+ +ND +   N K+
Sbjct: 78  RKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKL 137

Query: 64  KEELKAKICLDCGGSPFPMKDHQNFVQEMKQENAQLKQEASE 105
             EL A            +K H       ++E+A++K+E +E
Sbjct: 138 HAELVA------------LKKHD------RKESAKIKREFAE 161


>ATH6_ARATH (P46668) Homeobox-leucine zipper protein ATHB-6
           (Homeodomain transcription factor ATHB-6) (HD-ZIP
           protein ATHB-6)
          Length = 311

 Score = 45.8 bits (107), Expect = 4e-04
 Identities = 31/109 (28%), Positives = 57/109 (51%), Gaps = 15/109 (13%)

Query: 11  QRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIR---------NENL 61
           ++ +LA ++GL+P+Q+  WFQN+RA  K +   +  G L+ + D +R         NE+L
Sbjct: 88  RKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESL 147

Query: 62  KIKEELKAKICLDCGGSPFPMKDHQNFVQ-----EMKQENAQLKQEASE 105
            ++E  K K  L+ GG     +++   V       +K+E   L ++ +E
Sbjct: 148 -LQEISKLKTKLNGGGGEEEEEENNAAVTTESDISVKEEEVSLPEKITE 195


>HAT5_ARATH (Q02283) Homeobox-leucine zipper protein HAT5 (HD-ZIP
           protein 5) (HD-ZIP protein ATHB-1)
          Length = 272

 Score = 45.4 bits (106), Expect = 5e-04
 Identities = 26/74 (35%), Positives = 43/74 (57%), Gaps = 14/74 (18%)

Query: 11  QRCQLAVKIGLEPKQIKSWFQNKRAMLK-HQHERETN-------------GTLRRENDKI 56
           ++ QLA K+GL+P+Q+  WFQN+RA  K  Q ER+ +              ++  +NDK+
Sbjct: 94  RKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVMDNDKL 153

Query: 57  RNENLKIKEELKAK 70
           R+E   + E+L+ K
Sbjct: 154 RSEVTSLTEKLQGK 167


>ATH7_ARATH (P46897) Homeobox-leucine zipper protein ATHB-7
           (Homeodomain transcription factor ATHB-7) (HD-ZIP
           protein ATHB-7)
          Length = 258

 Score = 45.4 bits (106), Expect = 5e-04
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 11  QRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIRNENLKIKEELKAK 70
           ++ QLA ++GL+P+Q+  WFQNKRA  K +        LR+  D + ++   +K+E +A 
Sbjct: 58  KKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQAL 117

Query: 71  I 71
           +
Sbjct: 118 V 118


>HAT1_ARATH (P46600) Homeobox-leucine zipper protein HAT1 (HD-ZIP
           protein 1)
          Length = 282

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 22/65 (33%), Positives = 38/65 (57%)

Query: 2   KECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIRNENL 61
           KE +  +  Q+  LA K+GL  +Q++ WFQN+RA  K +        L+R  +K+  EN 
Sbjct: 152 KEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENR 211

Query: 62  KIKEE 66
           ++++E
Sbjct: 212 RLEKE 216


>PMXB_MOUSE (O35690) Paired mesoderm homeobox protein 2B
           (Paired-like homeobox 2B) (PHOX2B homeodomain protein)
           (Neuroblastoma Phox) (NBPhox)
          Length = 314

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 22/67 (32%), Positives = 36/67 (52%), Gaps = 7/67 (10%)

Query: 3   ECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERET-------NGTLRRENDK 55
           E H+PD   R +LA+KI L   +++ WFQN+RA  + Q            NG+  +++D 
Sbjct: 119 ETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDS 178

Query: 56  IRNENLK 62
            R++  K
Sbjct: 179 SRDDESK 185


>PMXB_HUMAN (Q99453) Paired mesoderm homeobox protein 2B
           (Paired-like homeobox 2B) (PHOX2B homeodomain protein)
           (Neuroblastoma Phox) (NBPhox)
          Length = 314

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 22/67 (32%), Positives = 36/67 (52%), Gaps = 7/67 (10%)

Query: 3   ECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERET-------NGTLRRENDK 55
           E H+PD   R +LA+KI L   +++ WFQN+RA  + Q            NG+  +++D 
Sbjct: 119 ETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDS 178

Query: 56  IRNENLK 62
            R++  K
Sbjct: 179 SRDDESK 185


>HT14_ARATH (P46665) Homeobox-leucine zipper protein HAT14 (HD-ZIP
           protein 14)
          Length = 225

 Score = 41.6 bits (96), Expect = 0.007
 Identities = 19/58 (32%), Positives = 35/58 (59%)

Query: 11  QRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKIRNENLKIKEELK 68
           Q+  LA ++ L P+Q++ WFQN+RA  K +        L+R  + +  EN ++++E+K
Sbjct: 105 QKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVK 162


>HM23_CAEEL (P34663) Homeobox protein ceh-23
          Length = 305

 Score = 41.6 bits (96), Expect = 0.007
 Identities = 20/58 (34%), Positives = 36/58 (61%), Gaps = 1/58 (1%)

Query: 10  AQRCQLAVKIGLEPKQIKSWFQNKRAM-LKHQHERETNGTLRRENDKIRNENLKIKEE 66
           A+R  LA ++GL P Q++ WFQN+R+   + Q E + + TL  ++++I  +  +  EE
Sbjct: 239 AERENLAQRLGLSPSQVRIWFQNRRSKHRRKQQEEQQSTTLEEKSEEIGKDEEEDDEE 296


>ATH5_ARATH (P46667) Homeobox-leucine zipper protein ATHB-5 (HD-ZIP
           protein ATHB-5)
          Length = 312

 Score = 41.6 bits (96), Expect = 0.007
 Identities = 26/71 (36%), Positives = 42/71 (58%), Gaps = 10/71 (14%)

Query: 11  QRCQLAVKIGLEPKQIKSWFQNKRAMLK-HQHERETN------GTLRRENDKIRNEN--- 60
           ++ +LA ++GL+P+Q+  WFQN+RA  K  Q ER+          L+R  D ++ +N   
Sbjct: 98  RKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRNRDSLQRDNDSL 157

Query: 61  LKIKEELKAKI 71
           L   +ELKAK+
Sbjct: 158 LGQIKELKAKL 168


>HMAA_SCHGR (P29556) Homeobox protein abdominal-A homolog (Fragment)
          Length = 157

 Score = 41.2 bits (95), Expect = 0.009
 Identities = 29/101 (28%), Positives = 50/101 (48%), Gaps = 16/101 (15%)

Query: 5   HHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHE--RETNGTLRRENDKIRNENLK 62
           H+    +R ++A  + L  +QIK WFQN+R  LK +    +E N   RRE    R E  +
Sbjct: 29  HYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEINEQARRE----REEQDR 84

Query: 63  IKEELKAKICLDCGGSPFPMKDHQNFVQEMKQENAQLKQEA 103
           +K++ + K+           +  Q   Q+ +Q+  Q +Q+A
Sbjct: 85  LKQQQEKKL----------EQQQQQQQQQQQQQQQQQQQQA 115


>SHX2_RAT (O35750) Short stature homeobox protein 2 (Paired family
           homeodomain protein Prx3) (Fragment)
          Length = 237

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 3   ECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTL 49
           E H+PD   R +L+ ++GL   +++ WFQN+RA  + Q  +   G L
Sbjct: 67  ETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVL 113


>SHX2_MOUSE (P70390) Short stature homeobox protein 2 (Homeobox
           protein Og12X) (OG-12) (Paired family homeodomain
           protein Prx3)
          Length = 331

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 3   ECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTL 49
           E H+PD   R +L+ ++GL   +++ WFQN+RA  + Q  +   G L
Sbjct: 161 ETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVL 207


>SHX2_HUMAN (O60902) Short stature homeobox protein 2
           (Paired-related homeobox protein SHOT) (Homeobox protein
           Og12X)
          Length = 331

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 3   ECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTL 49
           E H+PD   R +L+ ++GL   +++ WFQN+RA  + Q  +   G L
Sbjct: 161 ETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVL 207


>RX3_BRARE (O42358) Retinal homeobox protein Rx3
          Length = 292

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 17/55 (30%), Positives = 33/55 (59%)

Query: 2   KECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTLRRENDKI 56
           ++ H+PD   R +LA+K+ L   +++ WFQN+RA  + Q + E +    +E+  +
Sbjct: 126 EKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSIKLQESSML 180


>SHOX_HUMAN (O15266) Short stature homeobox protein (Short stature
           homeobox containing protein) (Pseudoautosomal homeobox
           containing osteogenic protein)
          Length = 292

 Score = 40.4 bits (93), Expect = 0.015
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 3   ECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETNGTL 49
           E H+PD   R +L+ ++GL   +++ WFQN+RA  + Q  +   G +
Sbjct: 138 ETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVI 184


>RX2_ORYLA (Q9I9A2) Retinal homeobox protein Rx2
          Length = 327

 Score = 40.4 bits (93), Expect = 0.015
 Identities = 16/45 (35%), Positives = 29/45 (63%)

Query: 2   KECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLKHQHERETN 46
           ++ H+PD   R +LA K+ L   +++ WFQN+RA  + Q + +T+
Sbjct: 157 EKSHYPDVYSREELATKVNLPEVRVQVWFQNRRAKWRRQEKMDTS 201


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.330    0.142    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,821,726
Number of Sequences: 164201
Number of extensions: 3160698
Number of successful extensions: 10186
Number of sequences better than 10.0: 498
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 9704
Number of HSP's gapped (non-prelim): 522
length of query: 675
length of database: 59,974,054
effective HSP length: 117
effective length of query: 558
effective length of database: 40,762,537
effective search space: 22745495646
effective search space used: 22745495646
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 69 (31.2 bits)


Medicago: description of AC147010.3