Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146941.10 - phase: 0 
         (124 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein             229  8e-61
PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kD...   171  2e-43
PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kD...   171  2e-43
PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein             166  7e-42
PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein             157  3e-39
PAB1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bin...    52  3e-07
PAB1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bin...    52  3e-07
NSR1_YEAST (P27476) Nuclear localization sequence binding protei...    51  4e-07
RU1A_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snR...    50  9e-07
PAB1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bindi...    50  9e-07
PAB1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bin...    50  9e-07
PAB3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bin...    49  2e-06
PAB1_XENLA (P20965) Polyadenylate-binding protein 1 (Poly(A)-bin...    49  2e-06
SFR1_ARATH (O22315) Pre-mRNA splicing factor SF2 (SR1 protein)         49  3e-06
RNP2_MOUSE (Q8VH51) RNA-binding region containing protein 2 (Coa...    49  3e-06
RNP2_HUMAN (Q14498) RNA-binding region containing protein 2 (Hep...    49  3e-06
PAB4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bin...    49  3e-06
PABX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g3...    48  4e-06
HRB1_YEAST (P38922) HRB1 protein (TOM34 protein)                       48  4e-06
SFR1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre...    47  6e-06

>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein
          Length = 124

 Score =  229 bits (584), Expect = 8e-61
 Identities = 113/124 (91%), Positives = 117/124 (94%)

Query: 1   MTTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTA 60
           MTTISLRK NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIG +K T+GTA
Sbjct: 1   MTTISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTA 60

Query: 61  FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVS 120
           FVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKMSKKFDQKK EDEI ++QEKYGVS
Sbjct: 61  FVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGVS 120

Query: 121 TKDK 124
           TKDK
Sbjct: 121 TKDK 124


>PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kDa
           subunit)
          Length = 125

 Score =  171 bits (434), Expect = 2e-43
 Identities = 77/121 (63%), Positives = 98/121 (80%)

Query: 1   MTTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTA 60
           M   + ++ N RLPPEVNR+LY+RNLP+ IT+EEMYDIFGKYG IRQIR+G   +TRGTA
Sbjct: 1   MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA 60

Query: 61  FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVS 120
           +VVYEDI+DAK A DHLSGFNV NRYL+VLYY   +  +K D KKKE+++  ++EKYG++
Sbjct: 61  YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN 120

Query: 121 T 121
           T
Sbjct: 121 T 121


>PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kDa
           subunit) (CGI-110) (HSPC175) (Ht006)
          Length = 125

 Score =  171 bits (434), Expect = 2e-43
 Identities = 77/121 (63%), Positives = 98/121 (80%)

Query: 1   MTTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTA 60
           M   + ++ N RLPPEVNR+LY+RNLP+ IT+EEMYDIFGKYG IRQIR+G   +TRGTA
Sbjct: 1   MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA 60

Query: 61  FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVS 120
           +VVYEDI+DAK A DHLSGFNV NRYL+VLYY   +  +K D KKKE+++  ++EKYG++
Sbjct: 61  YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN 120

Query: 121 T 121
           T
Sbjct: 121 T 121


>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein
          Length = 121

 Score =  166 bits (421), Expect = 7e-42
 Identities = 76/117 (64%), Positives = 95/117 (80%)

Query: 7   RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYED 66
           ++ + RLPPEVNR+LYVRNLP+ ITS+EMYDIFGK+GAIRQIR+G   +TRGTAFVVYED
Sbjct: 3   KRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYED 62

Query: 67  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVSTKD 123
           I+DAK A DHLSGFNV NRYL+VLYYQ  K  K+ D  KK++E+  ++ KY + T +
Sbjct: 63  IFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKYNLKTPE 119


>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein
          Length = 188

 Score =  157 bits (398), Expect = 3e-39
 Identities = 69/119 (57%), Positives = 95/119 (78%)

Query: 1   MTTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTA 60
           M   + +    +LPPEVNR+LY++NLP+ IT+EEMY+IFGK+GA+RQIR+G   +TRGTA
Sbjct: 51  MAMANRQNRGAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTA 110

Query: 61  FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 119
           FVVYEDI+DAKTA +HLSG+NV+NRYL+VLYYQ  K  K+ D +K   ++  ++E+YG+
Sbjct: 111 FVVYEDIFDAKTACEHLSGYNVSNRYLVVLYYQATKAWKRMDTEKARTKLEDIKERYGI 169


>PAB1_HUMAN (P11940) Polyadenylate-binding protein 1
           (Poly(A)-binding protein 1) (PABP 1)
          Length = 636

 Score = 51.6 bits (122), Expect = 3e-07
 Identities = 30/101 (29%), Positives = 57/101 (55%), Gaps = 8/101 (7%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD--TRGTAFVVYEDIYDAKTAVDHLS 78
           +Y++N   ++  E + D+FGK+G    +++ T++   ++G  FV +E   DA+ AVD ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 79  GFNVANRYLIVLYYQ-----QAKMSKKFDQKKKEDEIARMQ 114
           G  +  + + V   Q     Q ++ +KF+Q  K+D I R Q
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQ-MKQDRITRYQ 292



 Score = 36.2 bits (82), Expect = 0.013
 Identities = 18/77 (23%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           ++++NL  +I ++ +YD F  +G I   ++  +++ ++G  FV +E    A+ A++ ++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160

Query: 80  FNVANRYLIVLYYQQAK 96
             + +R + V  ++  K
Sbjct: 161 MLLNDRKVFVGRFKSRK 177



 Score = 33.5 bits (75), Expect = 0.086
 Identities = 25/90 (27%), Positives = 42/90 (45%), Gaps = 6/90 (6%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           LYV+NL   I  E +   F  +G I   ++      ++G  FV +    +A  AV  ++G
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355

Query: 80  FNVANRYLIVLYYQ-----QAKMSKKFDQK 104
             VA + L V   Q     QA ++ ++ Q+
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQR 385



 Score = 32.7 bits (73), Expect = 0.15
 Identities = 22/83 (26%), Positives = 44/83 (52%), Gaps = 3/83 (3%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTR---GTAFVVYEDIYDAKTAVDHL 77
           LYV +L  ++T   +Y+ F   G I  IR+  +  TR   G A+V ++   DA+ A+D +
Sbjct: 13  LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 78  SGFNVANRYLIVLYYQQAKMSKK 100
           +   +  + + +++ Q+    +K
Sbjct: 73  NFDVIKGKPVRIMWSQRDPSLRK 95


>PAB1_BOVIN (P61286) Polyadenylate-binding protein 1
           (Poly(A)-binding protein 1) (PABP 1)
          Length = 636

 Score = 51.6 bits (122), Expect = 3e-07
 Identities = 30/101 (29%), Positives = 57/101 (55%), Gaps = 8/101 (7%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD--TRGTAFVVYEDIYDAKTAVDHLS 78
           +Y++N   ++  E + D+FGK+G    +++ T++   ++G  FV +E   DA+ AVD ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 79  GFNVANRYLIVLYYQ-----QAKMSKKFDQKKKEDEIARMQ 114
           G  +  + + V   Q     Q ++ +KF+Q  K+D I R Q
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQ-MKQDRITRYQ 292



 Score = 36.2 bits (82), Expect = 0.013
 Identities = 18/77 (23%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           ++++NL  +I ++ +YD F  +G I   ++  +++ ++G  FV +E    A+ A++ ++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160

Query: 80  FNVANRYLIVLYYQQAK 96
             + +R + V  ++  K
Sbjct: 161 MLLNDRKVFVGRFKSRK 177



 Score = 33.5 bits (75), Expect = 0.086
 Identities = 25/90 (27%), Positives = 42/90 (45%), Gaps = 6/90 (6%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           LYV+NL   I  E +   F  +G I   ++      ++G  FV +    +A  AV  ++G
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355

Query: 80  FNVANRYLIVLYYQ-----QAKMSKKFDQK 104
             VA + L V   Q     QA ++ ++ Q+
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQR 385



 Score = 32.7 bits (73), Expect = 0.15
 Identities = 22/83 (26%), Positives = 44/83 (52%), Gaps = 3/83 (3%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTR---GTAFVVYEDIYDAKTAVDHL 77
           LYV +L  ++T   +Y+ F   G I  IR+  +  TR   G A+V ++   DA+ A+D +
Sbjct: 13  LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 78  SGFNVANRYLIVLYYQQAKMSKK 100
           +   +  + + +++ Q+    +K
Sbjct: 73  NFDVIKGKPVRIMWSQRDPSLRK 95


>NSR1_YEAST (P27476) Nuclear localization sequence binding protein
           (P67)
          Length = 414

 Score = 51.2 bits (121), Expect = 4e-07
 Identities = 25/75 (33%), Positives = 45/75 (59%), Gaps = 3/75 (4%)

Query: 14  PPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDT---RGTAFVVYEDIYDA 70
           P E +  L++ NL FN   + ++++F K+G +  +RI T+ +T   +G  +V + ++ DA
Sbjct: 262 PSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDA 321

Query: 71  KTAVDHLSGFNVANR 85
           K A+D L G  + NR
Sbjct: 322 KKALDALQGEYIDNR 336


>RU1A_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP
           protein A) (U1A protein) (U1-A)
          Length = 282

 Score = 50.1 bits (118), Expect = 9e-07
 Identities = 33/114 (28%), Positives = 56/114 (48%), Gaps = 12/114 (10%)

Query: 18  NRVLYVRNLPFNITSEEM----YDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTA 73
           N  +Y+ NL   I  +E+    Y IF ++G I  I +  N   RG AFV++++   A  A
Sbjct: 9   NNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSATNA 68

Query: 74  VDHLSGFNVANRYLIVLYYQQ-----AKMSKKF---DQKKKEDEIARMQEKYGV 119
           +  + GF   ++ + + Y +      AKM   F   D+K++E    ++ E  GV
Sbjct: 69  LRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVKVPEVQGV 122


>PAB1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding
           protein 1) (PABP 1)
          Length = 636

 Score = 50.1 bits (118), Expect = 9e-07
 Identities = 29/101 (28%), Positives = 57/101 (55%), Gaps = 8/101 (7%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD--TRGTAFVVYEDIYDAKTAVDHLS 78
           +Y++N   ++  E + ++FGK+G    +++ T++   ++G  FV +E   DA+ AVD ++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 79  GFNVANRYLIVLYYQ-----QAKMSKKFDQKKKEDEIARMQ 114
           G  +  + + V   Q     Q ++ +KF+Q  K+D I R Q
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQ-MKQDRITRYQ 292



 Score = 36.2 bits (82), Expect = 0.013
 Identities = 18/77 (23%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           ++++NL  +I ++ +YD F  +G I   ++  +++ ++G  FV +E    A+ A++ ++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160

Query: 80  FNVANRYLIVLYYQQAK 96
             + +R + V  ++  K
Sbjct: 161 MLLNDRKVFVGRFKSRK 177



 Score = 33.5 bits (75), Expect = 0.086
 Identities = 25/90 (27%), Positives = 42/90 (45%), Gaps = 6/90 (6%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           LYV+NL   I  E +   F  +G I   ++      ++G  FV +    +A  AV  ++G
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355

Query: 80  FNVANRYLIVLYYQ-----QAKMSKKFDQK 104
             VA + L V   Q     QA ++ ++ Q+
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQR 385



 Score = 32.7 bits (73), Expect = 0.15
 Identities = 22/83 (26%), Positives = 44/83 (52%), Gaps = 3/83 (3%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTR---GTAFVVYEDIYDAKTAVDHL 77
           LYV +L  ++T   +Y+ F   G I  IR+  +  TR   G A+V ++   DA+ A+D +
Sbjct: 13  LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 78  SGFNVANRYLIVLYYQQAKMSKK 100
           +   +  + + +++ Q+    +K
Sbjct: 73  NFDVIKGKPVRIMWSQRDPSLRK 95


>PAB1_MOUSE (P29341) Polyadenylate-binding protein 1
           (Poly(A)-binding protein 1) (PABP 1)
          Length = 636

 Score = 50.1 bits (118), Expect = 9e-07
 Identities = 29/101 (28%), Positives = 57/101 (55%), Gaps = 8/101 (7%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD--TRGTAFVVYEDIYDAKTAVDHLS 78
           +Y++N   ++  E + ++FGK+G    +++ T++   ++G  FV +E   DA+ AVD ++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 79  GFNVANRYLIVLYYQ-----QAKMSKKFDQKKKEDEIARMQ 114
           G  +  + + V   Q     Q ++ +KF+Q  K+D I R Q
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQ-MKQDRITRYQ 292



 Score = 37.7 bits (86), Expect = 0.005
 Identities = 26/105 (24%), Positives = 58/105 (54%), Gaps = 10/105 (9%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           ++++NL  +I ++ +YD F  +G I   ++  +++ ++G  FV +E    A+ A++ ++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160

Query: 80  FNVANRYLIVLYYQQAKMSKKFDQKKKEDEI-ARMQEKYGVSTKD 123
             + +R + V  ++         QK++E E+ AR +E   V  K+
Sbjct: 161 MLLNDRKVFVGRFK--------SQKEREAELGARAKEFTNVYIKN 197



 Score = 33.5 bits (75), Expect = 0.086
 Identities = 25/90 (27%), Positives = 42/90 (45%), Gaps = 6/90 (6%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           LYV+NL   I  E +   F  +G I   ++      ++G  FV +    +A  AV  ++G
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355

Query: 80  FNVANRYLIVLYYQ-----QAKMSKKFDQK 104
             VA + L V   Q     QA ++ ++ Q+
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQR 385



 Score = 32.7 bits (73), Expect = 0.15
 Identities = 22/83 (26%), Positives = 44/83 (52%), Gaps = 3/83 (3%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTR---GTAFVVYEDIYDAKTAVDHL 77
           LYV +L  ++T   +Y+ F   G I  IR+  +  TR   G A+V ++   DA+ A+D +
Sbjct: 13  LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 78  SGFNVANRYLIVLYYQQAKMSKK 100
           +   +  + + +++ Q+    +K
Sbjct: 73  NFDVIKGKPVRIMWSQRDPSLRK 95


>PAB3_HUMAN (Q9H361) Polyadenylate-binding protein 3
           (Poly(A)-binding protein 3) (PABP 3) (Testis-specific
           poly(A)-binding protein)
          Length = 631

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 29/101 (28%), Positives = 56/101 (54%), Gaps = 8/101 (7%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD--TRGTAFVVYEDIYDAKTAVDHLS 78
           +Y++N   ++  E + D+FGK+G    +++ T++   ++G  FV +E   DA+ AVD ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 79  GFNVANRYLIVLYYQ-----QAKMSKKFDQKKKEDEIARMQ 114
           G  +  + + V   Q     Q ++ + F+Q  K+D I R Q
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQ-MKQDRITRYQ 292



 Score = 33.9 bits (76), Expect = 0.066
 Identities = 25/90 (27%), Positives = 42/90 (45%), Gaps = 6/90 (6%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           LYV+NL   I  E +   F  +G I   ++      ++G  FV +    +A  AV  ++G
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355

Query: 80  FNVANRYLIVLYYQ-----QAKMSKKFDQK 104
             VA + L V   Q     QA ++ ++ Q+
Sbjct: 356 RIVATKPLYVALAQRKEERQAYLTNEYMQR 385



 Score = 32.3 bits (72), Expect = 0.19
 Identities = 18/77 (23%), Positives = 41/77 (52%), Gaps = 1/77 (1%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           ++V+NL  +I ++ +YD    +G I    +  +++ ++G  FV +E    A+ A+  ++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160

Query: 80  FNVANRYLIVLYYQQAK 96
             +  R + V  ++  K
Sbjct: 161 MLLNGRKVFVGQFKSRK 177



 Score = 32.3 bits (72), Expect = 0.19
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 10  NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT---AFVVYED 66
           N   P      LYV +L  ++T   +Y+ F   G I  IRI  +  T G+   A+V ++ 
Sbjct: 2   NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61

Query: 67  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKK 100
             DA+ A+D ++   +  + + +++ Q+    +K
Sbjct: 62  TKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRK 95


>PAB1_XENLA (P20965) Polyadenylate-binding protein 1
           (Poly(A)-binding protein 1) (PABP 1)
          Length = 633

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 30/101 (29%), Positives = 55/101 (53%), Gaps = 8/101 (7%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGT--NKDTRGTAFVVYEDIYDAKTAVDHLS 78
           +Y++N   ++  E + ++FGKYG    +++ T  N  ++G  FV +E   DA+ AVD + 
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMY 252

Query: 79  GFNVANRYLIVLYYQ-----QAKMSKKFDQKKKEDEIARMQ 114
           G ++  + + V   Q     Q ++ +KF+Q   +D I R Q
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQ-MNQDRITRYQ 292



 Score = 38.1 bits (87), Expect = 0.003
 Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 17/115 (14%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           ++++NL  +I ++ +YD F  +G I   ++  +++ ++G  FV +E    A+ A+D ++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160

Query: 80  FNVANRYLIVLYYQQAK----------------MSKKFDQKKKEDEIARMQEKYG 118
             + +R + V  ++  K                  K F     ++ +  M  KYG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYG 215



 Score = 34.3 bits (77), Expect = 0.051
 Identities = 23/83 (27%), Positives = 44/83 (52%), Gaps = 3/83 (3%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTR---GTAFVVYEDIYDAKTAVDHL 77
           LYV +L  ++T   +Y+ F   G I  IR+  +  TR   G A+V ++   DA+ A+D +
Sbjct: 13  LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 78  SGFNVANRYLIVLYYQQAKMSKK 100
           +   +  R + +++ Q+    +K
Sbjct: 73  NFDVIKGRPVRIMWSQRDPSLRK 95



 Score = 32.0 bits (71), Expect = 0.25
 Identities = 25/90 (27%), Positives = 42/90 (45%), Gaps = 6/90 (6%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           LYV+NL   I  E +   F  +G I   ++      ++G  FV +    +A  AV  ++G
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355

Query: 80  FNVANRYLIVLYYQ-----QAKMSKKFDQK 104
             VA + L V   Q     QA ++ ++ Q+
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQYMQR 385


>SFR1_ARATH (O22315) Pre-mRNA splicing factor SF2 (SR1 protein)
          Length = 303

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHL 77
          +R +YV NLP +I   E+ D+F KYG + QI +       G AFV ++D  DA+ A+   
Sbjct: 6  SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65

Query: 78 SGFN 81
           G++
Sbjct: 66 DGYD 69


>RNP2_MOUSE (Q8VH51) RNA-binding region containing protein 2
           (Coactivator of activating protein-1 and estrogen
           receptors) (Coactivator of AP-1 and ERs) (Transcription
           coactivator CAPER)
          Length = 530

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDT---RGTAFVVYEDIYDAKTAVDHL 77
           LYV +L FNIT + +  IF  +G I  I++  + +T   +G  F+ + D   AK A++ L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 78  SGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIAR 112
           +GF +A R + V +  +   +         DE+ R
Sbjct: 312 NGFELAGRPMKVGHVTERTDASSASSFLDSDELER 346



 Score = 30.8 bits (68), Expect = 0.56
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 6   LRKGNTRLPPEVN--RVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTR---GTA 60
           +R+    L PE    R ++   L   I   ++ + F   G +R +R+ +++++R   G A
Sbjct: 138 VREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIA 197

Query: 61  FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAK 96
           +V + D+   + A+  L+G  V    +IV   Q  K
Sbjct: 198 YVEFVDVSSVRLAIG-LTGQRVLGVPIIVQASQAEK 232


>RNP2_HUMAN (Q14498) RNA-binding region containing protein 2
           (Hepatocellular carcinoma protein 1) (Splicing factor
           HCC1)
          Length = 530

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDT---RGTAFVVYEDIYDAKTAVDHL 77
           LYV +L FNIT + +  IF  +G I  I++  + +T   +G  F+ + D   AK A++ L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 78  SGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIAR 112
           +GF +A R + V +  +   +         DE+ R
Sbjct: 312 NGFELAGRPMKVGHVTERTDASSASSFLDSDELER 346


>PAB4_HUMAN (Q13310) Polyadenylate-binding protein 4
           (Poly(A)-binding protein 4) (PABP 4) (Inducible
           poly(A)-binding protein) (iPABP) (Activated-platelet
           protein-1) (APP-1)
          Length = 644

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 28/101 (27%), Positives = 55/101 (53%), Gaps = 8/101 (7%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRI--GTNKDTRGTAFVVYEDIYDAKTAVDHLS 78
           +Y++N    +  E + ++F ++G    +++    N  ++G  FV YE   DA  AV+ ++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252

Query: 79  GFNVANRYLIVLYYQ-----QAKMSKKFDQKKKEDEIARMQ 114
           G  ++ + + V   Q     QA++ +KF+Q K+E  I+R Q
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE-RISRYQ 292



 Score = 36.6 bits (83), Expect = 0.010
 Identities = 19/77 (24%), Positives = 45/77 (57%), Gaps = 1/77 (1%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           ++++NL  +I ++ +YD F  +G I   ++  +++ ++G AFV +E    A  A++ ++G
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160

Query: 80  FNVANRYLIVLYYQQAK 96
             + +R + V  ++  K
Sbjct: 161 MLLNDRKVFVGRFKSRK 177



 Score = 33.5 bits (75), Expect = 0.086
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
           LY++NL   I  E++   F  +G+I   ++      ++G  FV +    +A  AV  ++G
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355

Query: 80  FNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQ 114
             V ++ L V   Q+ +  K     +    +A M+
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMR 390



 Score = 33.5 bits (75), Expect = 0.086
 Identities = 21/83 (25%), Positives = 44/83 (52%), Gaps = 3/83 (3%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTR---GTAFVVYEDIYDAKTAVDHL 77
           LYV +L  ++T   +Y+ F   G +  IR+  +  TR   G A+V ++   DA+ A+D +
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 78  SGFNVANRYLIVLYYQQAKMSKK 100
           +   +  + + +++ Q+    +K
Sbjct: 73  NFDVIKGKPIRIMWSQRDPSLRK 95


>PABX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein
           At2g36660 (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 47.8 bits (112), Expect = 4e-06
 Identities = 30/98 (30%), Positives = 53/98 (53%), Gaps = 7/98 (7%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD--TRGTAFVVYEDIYDAKTAVDHLS 78
           ++V+NLP ++T+  + D+F K+G I   ++ T +D  +RG  FV +E    A  A+  L+
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173

Query: 79  GFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEK 116
              VA++ + V      K  KK D+ K E++   +  K
Sbjct: 174 STIVADKEIYV-----GKFMKKTDRVKPEEKYTNLYMK 206



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 8/120 (6%)

Query: 6   LRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGT--NKDTRGTAFVV 63
           ++K +   P E    LY++NL  +++ + + + F ++G I  + I    N+  RG AFV 
Sbjct: 188 MKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVN 247

Query: 64  YEDIYDAKTAVDHLSGFNVANRYLIVLYYQ-----QAKMSKKFDQKKKEDE-IARMQEKY 117
           +++  DA+ A + ++G    ++ L V   Q     +  + ++F +K +E + IA++   Y
Sbjct: 248 FDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIY 307



 Score = 30.4 bits (67), Expect = 0.73
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 13/100 (13%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNK--DTRGTAFVVYEDIYDAKTAVDHLS 78
           +YV+N+   +T EE+   F + G I   ++  ++   ++G  FV +    +A  AV    
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365

Query: 79  GFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYG 118
           G     + L V   Q           KKED   ++Q ++G
Sbjct: 366 GQMFHGKPLYVAIAQ-----------KKEDRKMQLQVQFG 394


>HRB1_YEAST (P38922) HRB1 protein (TOM34 protein)
          Length = 429

 Score = 47.8 bits (112), Expect = 4e-06
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 16  EVNRVLYVRNLPFNITSEEMYDIFGKYGAIR--QIRIGTNKDTRGTAFVVYEDIYDAKTA 73
           E NR++Y  NLPF+    ++YD+F   G +   ++R  +     G A V Y+++ DA   
Sbjct: 348 ERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVC 407

Query: 74  VDHLSGFNVANRYLIVLY 91
           ++ L+ +N     L + Y
Sbjct: 408 IERLNNYNYGGCDLDISY 425



 Score = 34.7 bits (78), Expect = 0.039
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 5   SLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKD--TRGTAFV 62
           +L +G  R   + + V+ V+NLP ++  + + DIF + G +    +  + D  + G+  V
Sbjct: 223 ALDRGELRHNRKTHEVI-VKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTV 281

Query: 63  VYEDIYDAKTAVDHLSGFNVANRYLIV 89
            + DI D   A++  +G+++    L V
Sbjct: 282 SFYDIKDLHRAIEKYNGYSIEGNVLDV 308


>SFR1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1
          (pre-mRNA splicing factor SF2, P33 subunit)
          (Alternative splicing factor ASF-1) (OK/SW-cl.3)
          Length = 247

 Score = 47.4 bits (111), Expect = 6e-06
 Identities = 25/61 (40%), Positives = 38/61 (61%)

Query: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
          +YV NLP +I ++++ D+F KYGAIR I +   +     AFV +ED  DA+ AV    G+
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76

Query: 81 N 81
          +
Sbjct: 77 D 77


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.318    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,664,531
Number of Sequences: 164201
Number of extensions: 501904
Number of successful extensions: 1907
Number of sequences better than 10.0: 309
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 1461
Number of HSP's gapped (non-prelim): 478
length of query: 124
length of database: 59,974,054
effective HSP length: 100
effective length of query: 24
effective length of database: 43,553,954
effective search space: 1045294896
effective search space used: 1045294896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)


Medicago: description of AC146941.10