BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146864.6 - phase: 0 /pseudo
         (180 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

PYRB_STRR6 (Q8DPH9) Aspartate carbamoyltransferase (EC 2.1.3.2) ...    31  1.8
PYRB_STRPN (Q97QE2) Aspartate carbamoyltransferase (EC 2.1.3.2) ...    31  1.8
PYRB_STRMU (Q8DUP5) Aspartate carbamoyltransferase (EC 2.1.3.2) ...    30  3.0
CARL_MOUSE (Q9D5J6) Carbohydrate kinase-like protein (EC 2.7.1.-)      30  3.0
YICH_ECOLI (P31433) Hypothetical protein yicH                          30  3.9
CARL_HUMAN (Q9UHJ6) Carbohydrate kinase-like protein (EC 2.7.1.-)      30  3.9
PYRB_ENTFA (Q9L4T8) Aspartate carbamoyltransferase (EC 2.1.3.2) ...    29  5.2
VE2_HPV1A (P03118) Regulatory protein E2                               29  6.7
PYRB_LACLC (Q9L4N6) Aspartate carbamoyltransferase (EC 2.1.3.2) ...    29  6.7
PYRB_LACLA (Q9CF79) Aspartate carbamoyltransferase (EC 2.1.3.2) ...    29  6.7
CRBH_HUMAN (P82279) Crumbs protein homolog 1 precursor                 29  6.7
C4E3_DROME (Q9VL92) Cytochrome P450 4e3 (EC 1.14.-.-) (CYPIVE3)        29  6.7
CG2B_ORYSA (Q40671) G2/mitotic-specific cyclin 2 (B-like cyclin)...    28  8.8

>PYRB_STRR6 (Q8DPH9) Aspartate carbamoyltransferase (EC 2.1.3.2)
           (Aspartate transcarbamylase) (ATCase)
          Length = 307

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/52 (28%), Positives = 25/52 (47%)

Query: 64  PVGGNLLFHESLSIHQGTQYLVNYLGLEFEESAAQTKRLRSAHITYDTLLSI 115
           P+  NL F +S   H+  +     LGLE  +   +T  +      YDT+L++
Sbjct: 44  PIVSNLFFEDSTRTHKSFEVAEIKLGLERLDFDVKTSSVNKGETLYDTILTL 95


>PYRB_STRPN (Q97QE2) Aspartate carbamoyltransferase (EC 2.1.3.2)
           (Aspartate transcarbamylase) (ATCase)
          Length = 307

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/52 (28%), Positives = 25/52 (47%)

Query: 64  PVGGNLLFHESLSIHQGTQYLVNYLGLEFEESAAQTKRLRSAHITYDTLLSI 115
           P+  NL F +S   H+  +     LGLE  +   +T  +      YDT+L++
Sbjct: 44  PIVSNLFFEDSTRTHKSFEVAEIKLGLERLDFDVKTSSVNKGETLYDTILTL 95


>PYRB_STRMU (Q8DUP5) Aspartate carbamoyltransferase (EC 2.1.3.2)
           (Aspartate transcarbamylase) (ATCase)
          Length = 308

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 68  NLLFHESLSIHQGTQYLVNYLGLEFEESAAQTKRLRSAHITYDTLLSI 115
           NL F  S   H+  +     LGL+  E  A+T  +      YDT+L++
Sbjct: 51  NLFFEASTRTHKSFEVAEKKLGLDVIEFDAKTSSVNKGETLYDTILTM 98


>CARL_MOUSE (Q9D5J6) Carbohydrate kinase-like protein (EC 2.7.1.-)
          Length = 476

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 66  GGNLLFHESLSIHQGTQYLVNYLGLEFEESAAQTKRLRSAHITYDTLLSIYTSYLTE 122
           GGN+L   +  +H   Q++ + LGLE EES   ++ +++A    DT L+I  + L E
Sbjct: 321 GGNVL---ATFVHMLVQWMAD-LGLEVEESTVYSRMIQAAAQQKDTHLTITPTVLGE 373


>YICH_ECOLI (P31433) Hypothetical protein yicH
          Length = 569

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 7/44 (15%)

Query: 7  VIRASGLYLLLETNYGQVDHGLLIAFSERWHSETSSFHLPVGEM 50
          ++  +GLY LL+T +G  +H         W SE S +HL  G M
Sbjct: 16 LVAIAGLYFLLQTRWG-AEH------ISAWVSENSDYHLAFGAM 52


>CARL_HUMAN (Q9UHJ6) Carbohydrate kinase-like protein (EC 2.7.1.-)
          Length = 478

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 66  GGNLLFHESLSIHQGTQYLVNYLGLEFEESAAQTKRLRSAHITYDTLLSIYTSYLTE 122
           GGN+L   +  +H   Q++ + LGLE EES   ++ +++A    DT L+I  + L E
Sbjct: 323 GGNVL---ATFVHMLVQWMAD-LGLEVEESTVYSRMIQAAVQQRDTHLTITPTVLGE 375


>PYRB_ENTFA (Q9L4T8) Aspartate carbamoyltransferase (EC 2.1.3.2)
           (Aspartate transcarbamylase) (ATCase)
          Length = 308

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 68  NLLFHESLSIHQGTQYLVNYLGLEFEESAAQTKRLRSAHITYDTLLSI 115
           NL F  S   H+  +     LGLE  E  A    ++     YDT+L++
Sbjct: 51  NLFFENSTRTHKSFEVAEKKLGLEVIEFEASRSSVQKGETLYDTVLTM 98


>VE2_HPV1A (P03118) Regulatory protein E2
          Length = 401

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 22/75 (29%), Positives = 33/75 (43%), Gaps = 6/75 (8%)

Query: 69  LLFHESLSIHQGT-QYLVNYLGLEFEESAAQTKRLRSA-----HITYDTLLSIYTSYLTE 122
           +LF E  S +  T QY VNY G  F    + T   R+A     H  Y TL    T+  + 
Sbjct: 171 VLFAEEASKYSTTGQYAVNYRGKRFTNVMSSTSSPRAAGAPAVHSDYPTLSESDTAQQST 230

Query: 123 AKSYANQPEEEDSME 137
           +  Y   P + ++ +
Sbjct: 231 SIDYTELPGQGETSQ 245


>PYRB_LACLC (Q9L4N6) Aspartate carbamoyltransferase (EC 2.1.3.2)
           (Aspartate transcarbamylase) (ATCase)
          Length = 310

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 68  NLLFHESLSIHQGTQYLVNYLGLEFEESAAQTKRLRSAHITYDTLLSI 115
           NL F  S   H         LGL+  E  AQ   +      YDT+L++
Sbjct: 51  NLFFENSTRTHHSFHIAERKLGLDVLEFDAQASSISKGETLYDTVLTL 98


>PYRB_LACLA (Q9CF79) Aspartate carbamoyltransferase (EC 2.1.3.2)
           (Aspartate transcarbamylase) (ATCase)
          Length = 310

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 68  NLLFHESLSIHQGTQYLVNYLGLEFEESAAQTKRLRSAHITYDTLLSI 115
           NL F  S   H         LGL+  E  AQ   +      YDT+L++
Sbjct: 51  NLFFENSTRTHHSFHIAERKLGLDVLEFDAQASSISKGETLYDTVLTL 98


>CRBH_HUMAN (P82279) Crumbs protein homolog 1 precursor
          Length = 1376

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 36/174 (20%), Positives = 62/174 (34%), Gaps = 26/174 (14%)

Query: 4    FWNVIRASGLYLLLETNYGQVDHGLLIAFSERWHSETSSFHLPVGE-----MTITLDDVS 58
            F+ +   +  Y+L  T+   V+ G        WH  T S   P+ +     M +  +   
Sbjct: 1009 FFQLQSGNSFYMLSLTSLQSVNDGT-------WHEVTLSMTDPLSQTSRWQMEVDNETPF 1061

Query: 59   CLLHIPVGGNLLFHESLSIHQGTQYLVNYLGLEFEESAAQTKRLRSAHITYDTLLSIYTS 118
                I  G      ++  I+ G + + N  GL+   S  +             +  IY S
Sbjct: 1062 VTSTIATGSLNFLKDNTDIYVGDRAIDNIKGLQGCLSTIE-------------IGGIYLS 1108

Query: 119  YLTEAKSYANQPEEEDSMEWYRTRCIRAFLLYLVGCTLFSDKAGNSCCVVYLKY 172
            Y      + N+P+EE  ++   T  +    L L  C       G +C  +Y  Y
Sbjct: 1109 YFENVHGFINKPQEEQFLK-ISTNSVVTGCLQLNVCNSNPCLHGGNCEDIYSSY 1161


>C4E3_DROME (Q9VL92) Cytochrome P450 4e3 (EC 1.14.-.-) (CYPIVE3)
          Length = 526

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 7/45 (15%)

Query: 7   VIRASGLYLLLETNYGQVDHGLLIAFSERWHSE----TSSFHLPV 47
           +I+ S +Y LL    G   HGLL +F  +WH      T SFH  +
Sbjct: 98  LIQKSTIYDLLHPWLG---HGLLTSFGSKWHKHRKMITPSFHFNI 139


>CG2B_ORYSA (Q40671) G2/mitotic-specific cyclin 2 (B-like cyclin)
           (CycOs2)
          Length = 419

 Score = 28.5 bits (62), Expect = 8.8
 Identities = 12/43 (27%), Positives = 22/43 (50%)

Query: 133 EDSMEWYRTRCIRAFLLYLVGCTLFSDKAGNSCCVVYLKYFDD 175
           E  M  ++   + A  +Y   CT+   K+ N CC ++ KY ++
Sbjct: 326 EYEMLKFQPSMLAAAAIYTAQCTINGFKSWNKCCELHTKYSEE 368


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,117,767
Number of Sequences: 164201
Number of extensions: 825100
Number of successful extensions: 1646
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1637
Number of HSP's gapped (non-prelim): 14
length of query: 180
length of database: 59,974,054
effective HSP length: 103
effective length of query: 77
effective length of database: 43,061,351
effective search space: 3315724027
effective search space used: 3315724027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)