BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146862.6 - phase: 0 /pseudo
         (221 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NDKB_RAT (P19804) Nucleoside diphosphate kinase B (EC 2.7.4.6) (...    33  0.40
NDKB_MOUSE (Q01768) Nucleoside diphosphate kinase B (EC 2.7.4.6)...    33  0.40
NDKB_HUMAN (P22392) Nucleoside diphosphate kinase B (EC 2.7.4.6)...    33  0.40
Y4WJ_RHISN (P55688) Hypothetical 13.3 kDa protein y4wJ                 30  4.5
SMC_METJA (Q59037) Chromosome partition protein smc homolog            30  4.5
UPPS_HELHP (Q7VH74) Undecaprenyl pyrophosphate synthetase (EC 2....    30  5.8
ATPG_MOUSE (Q91VR2) ATP synthase gamma chain, mitochondrial prec...    30  5.8
HMW1_MYCGE (Q49413) Cytadherence high molecular weight protein 1...    29  7.6
GBA2_CAEEL (P22454) Guanine nucleotide-binding protein alpha-2 s...    29  9.9

>NDKB_RAT (P19804) Nucleoside diphosphate kinase B (EC 2.7.4.6) (NDK
           B) (NDP kinase B) (P18)
          Length = 152

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 22/79 (27%), Positives = 34/79 (42%), Gaps = 5/79 (6%)

Query: 127 ECLRRFCKGIIRLYEEVYLRAPNQDDLQRILHVSEMQGFPGMI-----GSIDCMHWEWKN 181
           E ++RF +   RL    +LRA  +   Q  + + +   FPG++     G +  M WE  N
Sbjct: 23  EIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLN 82

Query: 182 CPKAWEGTLNDINVLDRSP 200
             K     L + N  D  P
Sbjct: 83  VVKTGRVMLGETNPADSKP 101


>NDKB_MOUSE (Q01768) Nucleoside diphosphate kinase B (EC 2.7.4.6)
           (NDK B) (NDP kinase B) (nm23-M2) (P18)
          Length = 152

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 22/79 (27%), Positives = 34/79 (42%), Gaps = 5/79 (6%)

Query: 127 ECLRRFCKGIIRLYEEVYLRAPNQDDLQRILHVSEMQGFPGMI-----GSIDCMHWEWKN 181
           E ++RF +   RL    +LRA  +   Q  + + +   FPG++     G +  M WE  N
Sbjct: 23  EIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLN 82

Query: 182 CPKAWEGTLNDINVLDRSP 200
             K     L + N  D  P
Sbjct: 83  VVKTGRVMLGETNPADSKP 101


>NDKB_HUMAN (P22392) Nucleoside diphosphate kinase B (EC 2.7.4.6)
           (NDK B) (NDP kinase B) (nm23-H2) (C-myc purine-binding
           transcription factor PUF)
          Length = 152

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 22/79 (27%), Positives = 34/79 (42%), Gaps = 5/79 (6%)

Query: 127 ECLRRFCKGIIRLYEEVYLRAPNQDDLQRILHVSEMQGFPGMI-----GSIDCMHWEWKN 181
           E ++RF +   RL    +LRA  +   Q  + + +   FPG++     G +  M WE  N
Sbjct: 23  EIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLN 82

Query: 182 CPKAWEGTLNDINVLDRSP 200
             K     L + N  D  P
Sbjct: 83  VVKTGRVMLGETNPADSKP 101


>Y4WJ_RHISN (P55688) Hypothetical 13.3 kDa protein y4wJ
          Length = 125

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 24/89 (26%), Positives = 37/89 (40%), Gaps = 10/89 (11%)

Query: 83  RVDAANKEGISPLAKCTTTMRMLAYGVAADAVDEYIKIGGT-----TTLECLRRFCKG-- 135
           R+ A  K   + LA      + L Y +  D V  YI++          LE +    +G  
Sbjct: 17  RLPANLKPSATGLAPIVAAGKSLGYNITLDEVQNYIRLDSRRKSTGKKLEAMANSKRGSR 76

Query: 136 ---IIRLYEEVYLRAPNQDDLQRILHVSE 161
              + RL +   L +P  D L R LH++E
Sbjct: 77  VPALPRLVQSSALDSPVTDGLTRPLHIAE 105


>SMC_METJA (Q59037) Chromosome partition protein smc homolog
          Length = 1169

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 18/70 (25%), Positives = 35/70 (49%), Gaps = 1/70 (1%)

Query: 5    DIEAYKQKRDIEDTYIVNRFIQRRKKLEEAANQRLIDDYFANEPTYDDAMFRRR-YRMQK 63
            D+    +K+DIE+  I    ++   K  E  N R I+DY      Y + + +R+ Y   +
Sbjct: 950  DVSKELEKKDIEELEIYIGELENEIKSLEPVNMRAIEDYNYVAERYKELIEKRKEYERDE 1009

Query: 64   HVFLRIVGDL 73
              +L+++ +L
Sbjct: 1010 KKYLQLMEEL 1019


>UPPS_HELHP (Q7VH74) Undecaprenyl pyrophosphate synthetase (EC
           2.5.1.31) (UPP synthetase)
           (Di-trans-poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 237

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 27/102 (26%), Positives = 45/102 (43%), Gaps = 17/102 (16%)

Query: 27  RRKKLEEAANQRLIDDYFANE-PTYDDAMFRRRYRMQKHVFLRIVGDLSITDNYFTQRVD 85
           +R K+E     +L++ Y  +E P Y          M+ H+  R++GD+S+    F  R+ 
Sbjct: 64  KRPKIEVDFLMKLLEKYLHDEKPVY----------MKNHIRFRVIGDISV----FNTRLK 109

Query: 86  AANKEGISPLAKCTTTMRMLA--YGVAADAVDEYIKIGGTTT 125
            A  E        T   ++LA  YG   +    +IK+  T T
Sbjct: 110 NAILELEHATQNHTKLTQILALNYGSRDEIARTFIKLAHTLT 151


>ATPG_MOUSE (Q91VR2) ATP synthase gamma chain, mitochondrial
           precursor (EC 3.6.3.14)
          Length = 298

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 24/82 (29%), Positives = 37/82 (44%), Gaps = 9/82 (10%)

Query: 90  EGISPLAKCTTTMRMLAYGVAADAVDEYIKIGGTTTLECLRRFCKGIIRLYEEVYLRAPN 149
           + I  + K T +M+M+A    A A  E         L+  R +  G + LYE+  ++AP 
Sbjct: 36  KSIKNIQKITKSMKMVAAAKYARAERE---------LKPARVYGTGSLALYEKADIKAPE 86

Query: 150 QDDLQRILHVSEMQGFPGMIGS 171
                 I+ VS  +G  G I S
Sbjct: 87  DKKKHLIIGVSSDRGLCGAIHS 108


>HMW1_MYCGE (Q49413) Cytadherence high molecular weight protein 1
           (Cytadherence accessory protein 1)
          Length = 1139

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 10  KQKRDIEDTY-IVNRFIQRRKKLEEAANQRLIDDYFANEPTYDDAMF 55
           KQ   +ED Y   N      K+ E   +Q   DDYFA +PT ++  F
Sbjct: 167 KQPESVEDNYGFDNDLPPEVKQPESVVDQPSSDDYFAKQPTDENYGF 213


>GBA2_CAEEL (P22454) Guanine nucleotide-binding protein alpha-2
           subunit
          Length = 356

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 17/63 (26%), Positives = 29/63 (45%), Gaps = 3/63 (4%)

Query: 47  EPTYDDAMFRRRYRMQKHVFLRIVGDLSITDNYFTQRVDAANKEGISPLAKCTTTMRMLA 106
           E  + D + +R Y  +K + +R +GD      YF + +   +KE   P A  T  +R   
Sbjct: 128 EKLWKDPVVKRLYAERKELNIRDIGD---NTEYFFENLPRISKEDYHPNATDTLLLRTKT 184

Query: 107 YGV 109
            G+
Sbjct: 185 TGI 187


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,826,774
Number of Sequences: 164201
Number of extensions: 1109506
Number of successful extensions: 2493
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2493
Number of HSP's gapped (non-prelim): 10
length of query: 221
length of database: 59,974,054
effective HSP length: 106
effective length of query: 115
effective length of database: 42,568,748
effective search space: 4895406020
effective search space used: 4895406020
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)