BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146856.2 + phase: 0
(88 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CDYL_MOUSE (Q9WTK2) Chromodomain Y-like protein (CDY-like) 32 0.22
CDYL_HUMAN (Q9Y232) Chromodomain Y-like protein (CDY-like) 32 0.22
CBX7_RAT (P60889) Chromobox protein homolog 7 32 0.22
CBX7_MOUSE (Q8VDS3) Chromobox protein homolog 7 32 0.22
CBX7_HUMAN (O95931) Chromobox protein homolog 7 32 0.22
CBX1_MOUSE (P83917) Chromobox protein homolog 1 (Heterochromatin... 32 0.28
CBX1_HUMAN (P83916) Chromobox protein homolog 1 (Heterochromatin... 32 0.28
CDY2_HUMAN (Q9Y6F7) Testis-specific chromodomain protein Y 2 31 0.49
CDY1_HUMAN (Q9Y6F8) Testis-specific chromodomain protein Y 1 31 0.49
SAHH_MYCLE (Q9CCJ4) Adenosylhomocysteinase (EC 3.3.1.1) (S-adeno... 30 1.1
OM1D_CHLTR (Q46409) Major outer membrane protein, serovar D prec... 30 1.1
HRP1_SCHPO (Q9US25) Chromodomain helicase hrp1 30 1.1
CHD1_YEAST (P32657) Chromo domain protein 1 30 1.1
CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 ... 30 1.4
CHD3_CAEEL (Q22516) Chromodomain helicase-DNA-binding protein 3 ... 30 1.4
CBX5_MOUSE (Q61686) Chromobox protein homolog 5 (Heterochromatin... 30 1.4
CBX5_HUMAN (P45973) Chromobox protein homolog 5 (Heterochromatin... 30 1.4
CBX4_MOUSE (O55187) Chromobox protein homolog 4 (Polycomb 2 homo... 30 1.4
CBX4_HUMAN (O00257) Chromobox protein homolog 4 (Polycomb 2 homo... 30 1.4
SM4A_HUMAN (Q9H3S1) Semaphorin 4A precursor (Semaphorin B) (Sema... 29 2.4
>CDYL_MOUSE (Q9WTK2) Chromodomain Y-like protein (CDY-like)
Length = 593
Score = 32.3 bits (72), Expect = 0.22
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 21 KTQMLVQWKGLSPEEATWEDEDEM 44
KT+ LV+WKG E+ TWE E +
Sbjct: 71 KTEYLVRWKGYDSEDDTWEPEQHL 94
>CDYL_HUMAN (Q9Y232) Chromodomain Y-like protein (CDY-like)
Length = 598
Score = 32.3 bits (72), Expect = 0.22
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 21 KTQMLVQWKGLSPEEATWEDEDEM 44
KT+ LV+WKG E+ TWE E +
Sbjct: 76 KTEYLVRWKGYDSEDDTWEPEQHL 99
>CBX7_RAT (P60889) Chromobox protein homolog 7
Length = 158
Score = 32.3 bits (72), Expect = 0.22
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 4 QPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEM 44
Q V R R +G K + LV+WKG P+ +TWE E+ +
Sbjct: 9 QVFAVESIRKKRVRKG-KVEYLVKWKGWPPKYSTWEPEEHI 48
>CBX7_MOUSE (Q8VDS3) Chromobox protein homolog 7
Length = 158
Score = 32.3 bits (72), Expect = 0.22
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 4 QPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEM 44
Q V R R +G K + LV+WKG P+ +TWE E+ +
Sbjct: 9 QVFAVESIRKKRVRKG-KVEYLVKWKGWPPKYSTWEPEEHI 48
>CBX7_HUMAN (O95931) Chromobox protein homolog 7
Length = 251
Score = 32.3 bits (72), Expect = 0.22
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 4 QPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEM 44
Q V R R +G K + LV+WKG P+ +TWE E+ +
Sbjct: 9 QVFAVESIRKKRVRKG-KVEYLVKWKGWPPKYSTWEPEEHI 48
>CBX1_MOUSE (P83917) Chromobox protein homolog 1 (Heterochromatin
protein 1 homolog beta) (HP1 beta) (Modifier 1 protein)
(M31) (Heterochromatin protein p25)
Length = 185
Score = 32.0 bits (71), Expect = 0.28
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 21 KTQMLVQWKGLSPEEATWEDEDEM 44
K + L++WKG S E+ TWE E+ +
Sbjct: 35 KVEYLLKWKGFSDEDNTWEPEENL 58
>CBX1_HUMAN (P83916) Chromobox protein homolog 1 (Heterochromatin
protein 1 homolog beta) (HP1 beta) (Modifier 1 protein)
(M31) (Heterochromatin protein p25) (HP1Hsbeta)
(p25beta)
Length = 185
Score = 32.0 bits (71), Expect = 0.28
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 21 KTQMLVQWKGLSPEEATWEDEDEM 44
K + L++WKG S E+ TWE E+ +
Sbjct: 35 KVEYLLKWKGFSDEDNTWEPEENL 58
>CDY2_HUMAN (Q9Y6F7) Testis-specific chromodomain protein Y 2
Length = 541
Score = 31.2 bits (69), Expect = 0.49
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 1 MDHQPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEM 44
M Q +V R + TQ LV+WKG ++ TWE E +
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHL 44
>CDY1_HUMAN (Q9Y6F8) Testis-specific chromodomain protein Y 1
Length = 540
Score = 31.2 bits (69), Expect = 0.49
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 1 MDHQPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEM 44
M Q +V R + TQ LV+WKG ++ TWE E +
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHL 44
>SAHH_MYCLE (Q9CCJ4) Adenosylhomocysteinase (EC 3.3.1.1)
(S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Length = 492
Score = 30.0 bits (66), Expect = 1.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 16 TPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPILEDKVVEGDGNDTYSL 68
TP+ K + WKG + EE W E + +WP P ++ DG D L
Sbjct: 110 TPEEPKGVPVFAWKGETLEEYWWAAEQML--TWPDPDKPVNMILDDGGDATML 160
>OM1D_CHLTR (Q46409) Major outer membrane protein, serovar D
precursor (MOMP)
Length = 393
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 4/56 (7%)
Query: 26 VQWKGLSPEE----ATWEDEDEMRTSWPSPILEDKVVEGDGNDTYSLDSKHATEPG 77
+ W+G + ATW D MR + + D+V++ D N + + +K T+ G
Sbjct: 38 ILWEGFGGDPCDPCATWCDAISMRVGYYGDFVFDRVLKTDVNKEFQMGAKPTTDTG 93
>HRP1_SCHPO (Q9US25) Chromodomain helicase hrp1
Length = 1373
Score = 30.0 bits (66), Expect = 1.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 21 KTQMLVQWKGLSPEEATWEDEDEMRTSWPSPILE 54
KT+ V+W+ L + TWED D + + P+ + +
Sbjct: 319 KTEYFVKWRQLPYDNCTWEDADVIYSMAPNEVYQ 352
>CHD1_YEAST (P32657) Chromo domain protein 1
Length = 1468
Score = 30.0 bits (66), Expect = 1.1
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 3 HQPLKVLGTRSLRTPQGI-KTQMLVQWKGLSPEEATWEDEDEM 44
H P +++ ++ G + Q LV+W+ L+ +EATWE+ ++
Sbjct: 285 HVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDI 327
>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6
(CHD-6)
Length = 2713
Score = 29.6 bits (65), Expect = 1.4
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 6 LKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEM 44
L+V T+ T + + T LV+W L EE+TWE E+++
Sbjct: 379 LEVAHTKDAETGEEV-THYLVKWCSLPYEESTWELEEDV 416
>CHD3_CAEEL (Q22516) Chromodomain helicase-DNA-binding protein 3
homolog (CHD-3)
Length = 1787
Score = 29.6 bits (65), Expect = 1.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 25 LVQWKGLSPEEATWEDEDEMRTSWPSPILE 54
LV+WK LS E ATWE +D ++ I++
Sbjct: 520 LVKWKELSYEHATWERDDTDIANYEDAIIK 549
>CBX5_MOUSE (Q61686) Chromobox protein homolog 5 (Heterochromatin
protein 1 homolog alpha) (HP1 alpha)
Length = 191
Score = 29.6 bits (65), Expect = 1.4
Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 11/62 (17%)
Query: 7 KVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPILE-----DKVVEGD 61
KVL R ++ + + L++WKG S E TWE E + P I E K+ EG+
Sbjct: 24 KVLDRRMVKG----QVEYLLKWKGFSEEHNTWEPEKNL--DCPELISEFMKKYKKMKEGE 77
Query: 62 GN 63
N
Sbjct: 78 NN 79
>CBX5_HUMAN (P45973) Chromobox protein homolog 5 (Heterochromatin
protein 1 homolog alpha) (HP1 alpha) (Antigen p25)
Length = 191
Score = 29.6 bits (65), Expect = 1.4
Identities = 20/75 (26%), Positives = 33/75 (43%), Gaps = 9/75 (12%)
Query: 21 KTQMLVQWKGLSPEEATWEDEDEMRTSWPSPILE-----DKVVEGDGNDTYSLDSKHATE 75
+ + L++WKG S E TWE E + P I E K+ EG+ N + +
Sbjct: 34 QVEYLLKWKGFSEEHNTWEPEKNL--DCPELISEFMKKYKKMKEGENNKPREKSESNKRK 91
Query: 76 PGIRN--EQLNTKKE 88
N + + +KK+
Sbjct: 92 SNFSNSADDIKSKKK 106
>CBX4_MOUSE (O55187) Chromobox protein homolog 4 (Polycomb 2
homolog) (Pc2) (MPc2)
Length = 551
Score = 29.6 bits (65), Expect = 1.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 21 KTQMLVQWKGLSPEEATWEDEDEM 44
+ + LV+W+G SP+ TWE E+ +
Sbjct: 25 RVEYLVKWRGWSPKYNTWEPEENI 48
>CBX4_HUMAN (O00257) Chromobox protein homolog 4 (Polycomb 2
homolog) (Pc2) (hPc2)
Length = 558
Score = 29.6 bits (65), Expect = 1.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 21 KTQMLVQWKGLSPEEATWEDEDEM 44
+ + LV+W+G SP+ TWE E+ +
Sbjct: 25 RVEYLVKWRGWSPKYNTWEPEENI 48
>SM4A_HUMAN (Q9H3S1) Semaphorin 4A precursor (Semaphorin B) (Sema B)
(UNQ783/PRO1317)
Length = 761
Score = 28.9 bits (63), Expect = 2.4
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 43 EMRTSWPSPILEDKVVEGDGNDTYSLDSKH 72
E++ S+ PI EDKV+EG G + KH
Sbjct: 155 ELQDSYLLPISEDKVMEGKGQSPFDPAHKH 184
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.307 0.128 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,484,928
Number of Sequences: 164201
Number of extensions: 458318
Number of successful extensions: 783
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 48
length of query: 88
length of database: 59,974,054
effective HSP length: 64
effective length of query: 24
effective length of database: 49,465,190
effective search space: 1187164560
effective search space used: 1187164560
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146856.2