BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146853.8 + phase: 0 /partial
         (71 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

HIS4_CANGA (Q6FPN5) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylami...    30  1.1
IF3_CLOTE (Q891T1) Translation initiation factor IF-3                  30  1.5
R13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly ba...    29  1.9
IF3_HELPY (P55973) Translation initiation factor IF-3                  28  3.3
IF3_HELPJ (Q9ZMV2) Translation initiation factor IF-3                  28  3.3
MR11_METMP (P62131) DNA double-strand break repair protein mre11       28  4.3
R331_MYCPU (Q98Q77) 50S ribosomal protein L33 type 1                   28  5.7
LY75_MOUSE (Q60767) Lymphocyte antigen 75 precursor (DEC-205) (C...    27  7.4
RL36_CAEEL (P49181) 60S ribosomal protein L36                          27  9.7
R13A_RAT (P35427) 60S ribosomal protein L13a                           27  9.7
IF3_FUSNN (Q8R5Y3) Translation initiation factor IF-3                  27  9.7

>HIS4_CANGA (Q6FPN5)
           1-(5-phosphoribosyl)-5-[(5-
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase) (5-proFAR isomerase)
          Length = 261

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query: 9   VIDTSCRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSKLTRELDIH 55
           V+D SCR     K+V   N W+     + NK    + SK T E  IH
Sbjct: 131 VVDLSCRRTPDSKWVVAMNKWQTLTTLELNKETFTELSKYTDEFLIH 177


>IF3_CLOTE (Q891T1) Translation initiation factor IF-3
          Length = 173

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 13/45 (28%), Positives = 26/45 (56%), Gaps = 1/45 (2%)

Query: 14  CRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSKLTRELDIHGIG 58
           C++    KF++ +   K +E K+K K +  K+ +L+  ++ H IG
Sbjct: 60  CKIMNYGKFIYEQTK-KDKEAKKKQKVINVKEIRLSATIEEHDIG 103


>R13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly basic
           protein)
          Length = 202

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 21  KFVFRKNDWKIRERKQKNKFVAKKKSKLTRELDIHGI 57
           K  +RK    +R RKQ  K V KK  K T  L  HG+
Sbjct: 164 KIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 200


>IF3_HELPY (P55973) Translation initiation factor IF-3
          Length = 203

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 14/39 (35%), Positives = 26/39 (65%), Gaps = 1/39 (2%)

Query: 14 CRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSKLTREL 52
          C+V   +KF ++ N+ KI+E K+K K +  K+ KL+ ++
Sbjct: 58 CKVMDYNKFRYQ-NEKKIKEAKKKQKQIEIKEIKLSTQI 95


>IF3_HELPJ (Q9ZMV2) Translation initiation factor IF-3
          Length = 203

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 14/39 (35%), Positives = 26/39 (65%), Gaps = 1/39 (2%)

Query: 14 CRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSKLTREL 52
          C+V   +KF ++ N+ KI+E K+K K +  K+ KL+ ++
Sbjct: 58 CKVMDYNKFRYQ-NEKKIKEAKKKQKQIEIKEIKLSTQI 95


>MR11_METMP (P62131) DNA double-strand break repair protein mre11
          Length = 372

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 14/44 (31%), Positives = 23/44 (51%)

Query: 2   FTKSEVTVIDTSCRVWKVDKFVFRKNDWKIRERKQKNKFVAKKK 45
           F  + +  ID  CR + +DK +  +ND+K    + +N    KKK
Sbjct: 239 FDINSIQKIDVECRNFLIDKKIKNENDYKKTVEELQNLQSEKKK 282


>R331_MYCPU (Q98Q77) 50S ribosomal protein L33 type 1
          Length = 50

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 13 SCRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSK 47
          +C+  K++ ++ +KN  K  E+ + NKF +K  SK
Sbjct: 9  ACKECKMENYISKKNKKKHVEKLEINKFCSKCNSK 43


>LY75_MOUSE (Q60767) Lymphocyte antigen 75 precursor (DEC-205)
           (CD205 antigen)
          Length = 1723

 Score = 27.3 bits (59), Expect = 7.4
 Identities = 8/32 (25%), Positives = 22/32 (68%)

Query: 22  FVFRKNDWKIRERKQKNKFVAKKKSKLTRELD 53
           ++ +   WK++  ++K ++V KKK ++T++ +
Sbjct: 465 YLGKLGQWKVQSCEKKLRYVCKKKGEITKDAE 496


>RL36_CAEEL (P49181) 60S ribosomal protein L36
          Length = 104

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 10/22 (45%), Positives = 18/22 (81%)

Query: 31 IRERKQKNKFVAKKKSKLTREL 52
          +++R+ ++K VA KK+K+ REL
Sbjct: 24 VKQRQNRHKGVASKKTKIVREL 45


>R13A_RAT (P35427) 60S ribosomal protein L13a
          Length = 202

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 15/37 (40%), Positives = 19/37 (50%)

Query: 21  KFVFRKNDWKIRERKQKNKFVAKKKSKLTRELDIHGI 57
           K  +RK    +R RKQ  K V KK  K T  L  +G+
Sbjct: 164 KIHYRKKKQLLRLRKQAEKNVEKKICKFTEVLKTNGL 200


>IF3_FUSNN (Q8R5Y3) Translation initiation factor IF-3
          Length = 188

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 14  CRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSKLTRELDIHGI 57
           C++    K+ + +   K++E K+  K V  K+ K+T  +D H +
Sbjct: 76  CKIMDYSKYKYEQTR-KLKEAKKNQKQVVIKEIKVTARIDSHDL 118


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.323    0.135    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,922,510
Number of Sequences: 164201
Number of extensions: 243674
Number of successful extensions: 1034
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 11
length of query: 71
length of database: 59,974,054
effective HSP length: 47
effective length of query: 24
effective length of database: 52,256,607
effective search space: 1254158568
effective search space used: 1254158568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)